UHGV-2051621

Genome information

Genome length 43,060 bps

CDS count 60

Completeness 94.49% (high-quality)

geNomad score 0.9719

Prediction confidence Confident

Genome information
Genome ID	UHGV-2051621
vOTU ID	vOTU-069524
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029234\|Ga0168698_100079\|provirus_22640_68556
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9719
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.65
Jumbo phage	No

Genome content
Genome length	43,060 bps
GC content	40.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	88.96%
Average CDS length	641.50 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2051621_1	KOfam	K14059	int; integrase	NA
UHGV-2051621_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2051621_1	UniRef90	UniRef90_A0A412L7T7	Site-specific integrase	NA
UHGV-2051621_1	eggNOG-mapper	1540257.JQMW01000011_gene2033	Phage integrase family	NA
UHGV-2051621_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2051621_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2051621_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2051621_2	PHROG	phrog_6988	NA	unknown function
UHGV-2051621_2	UniRef90	UniRef90_A0A841TDM8	TIR domain-containing protein	NA
UHGV-2051621_2	eggNOG-mapper	203119.Cthe_2456	NA	NA
UHGV-2051621_2	PADLOC	ThsB1_00002	TIR-like	Thoeris
UHGV-2051621_2	Pfam	PF08937	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
UHGV-2051621_2	Structural annotation	PF08937, MF_03036, TIGR03646, COG0758	NA	NA
UHGV-2051621_3	PHROG	phrog_419	NA	unknown function
UHGV-2051621_3	UniRef90	UniRef90_A0A096BXT9	Sugar ABC transporter substrate-binding protein	NA
UHGV-2051621_3	eggNOG-mapper	1401067.HMPREF0872_03940	NA	NA
UHGV-2051621_4	PHROG	phrog_7395	NA	unknown function
UHGV-2051621_4	UniRef90	UniRef90_A0A417IT12	NA	NA
UHGV-2051621_4	eggNOG-mapper	29306.JOBE01000009_gene6854	NA	NA
UHGV-2051621_4	Pfam	PF14015	NA	DUF4231
UHGV-2051621_4	NCBIFam	NF033634.1	SLATT domain-containing protein	NA
UHGV-2051621_5	PHROG	phrog_87	metallo-protease	other
UHGV-2051621_5	UniRef90	UniRef90_A0A1Y4S739	Peptidase_M78 domain-containing protein	NA
UHGV-2051621_5	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-2051621_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2051621_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2051621_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2051621_6	UniRef90	UniRef90_A0A413K864	XRE family transcriptional regulator	NA
UHGV-2051621_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2051621_6	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-2051621_7	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-2051621_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2051621_10	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-2051621_10	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2051621_12	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2051621_12	PHROG	phrog_1499	NA	unknown function
UHGV-2051621_12	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-2051621_12	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-2051621_12	Pfam	PF13476	AAA domain	AAA_23
UHGV-2051621_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2051621_12	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-2051621_14	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2051621_14	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-2051621_14	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-2051621_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-2051621_14	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2051621_15	PHROG	phrog_2698	NA	unknown function
UHGV-2051621_15	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-2051621_15	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-2051621_15	Structural annotation	PF17426, NF005674	NA	NA
UHGV-2051621_16	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2051621_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2051621_16	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-2051621_16	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-2051621_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2051621_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2051621_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2051621_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2051621_16	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2051621_17	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2051621_17	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2051621_17	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-2051621_17	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-2051621_17	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2051621_17	Pfam	PF13481	AAA domain	AAA_25
UHGV-2051621_17	COG	COG3598	RecA-family ATPase	NA
UHGV-2051621_17	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2051621_18	PHROG	phrog_16687	NA	unknown function
UHGV-2051621_18	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-2051621_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2051621_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2051621_19	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-2051621_19	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-2051621_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2051621_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2051621_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2051621_20	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-2051621_22	Structural annotation	PF19824, MF_01506	NA	NA
UHGV-2051621_24	PHROG	phrog_8684	NA	unknown function
UHGV-2051621_24	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-2051621_24	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-2051621_24	Pfam	PF09643	YopX protein	YopX
UHGV-2051621_24	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2051621_24	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2051621_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2051621_25	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2051621_25	UniRef90	UniRef90_UPI0014599578	site-specific DNA-methyltransferase	NA
UHGV-2051621_25	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-2051621_25	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2051621_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2051621_25	COG	COG0863	DNA modification methylase	NA
UHGV-2051621_25	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2051621_26	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-2051621_26	eggNOG-mapper	411459.RUMOBE_01108	NA	NA
UHGV-2051621_26	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-2051621_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2051621_27	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-2051621_27	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-2051621_27	Pfam	PF07374	NA	DUF1492
UHGV-2051621_27	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-2051621_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2051621_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2051621_28	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-2051621_28	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2051621_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2051621_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2051621_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2051621_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2051621_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2051621_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-2051621_29	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-2051621_29	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-2051621_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2051621_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2051621_30	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-2051621_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2051621_30	COG	COG2369	NA	NA
UHGV-2051621_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2051621_31	UniRef90	UniRef90_UPI001897AC3D	phage minor capsid protein	NA
UHGV-2051621_31	eggNOG-mapper	33035.JPJF01000030_gene2290	Phage minor capsid protein 2	NA
UHGV-2051621_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2051621_31	COG	COG2369	NA	NA
UHGV-2051621_33	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2051621_33	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-2051621_33	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-2051621_34	PHROG	phrog_2616	NA	unknown function
UHGV-2051621_34	Structural annotation	PF01281	NA	NA
UHGV-2051621_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2051621_35	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-2051621_35	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2051621_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2051621_35	Structural annotation	PF06810	NA	NA
UHGV-2051621_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-2051621_36	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2051621_36	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2051621_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2051621_37	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2051621_37	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-2051621_38	PHROG	phrog_3366	NA	unknown function
UHGV-2051621_38	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2051621_38	Pfam	PF20536	NA	DUF6751
UHGV-2051621_38	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2051621_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2051621_39	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-2051621_39	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2051621_39	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2051621_39	Structural annotation	PF11114	NA	NA
UHGV-2051621_40	PHROG	phrog_3266	tail completion	connector
UHGV-2051621_40	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-2051621_40	Structural annotation	PF20765	NA	NA
UHGV-2051621_41	PHROG	phrog_3099	NA	unknown function
UHGV-2051621_41	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2051621_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2051621_42	PHROG	phrog_11299	NA	unknown function
UHGV-2051621_42	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2051621_42	Structural annotation	PF10666	NA	NA
UHGV-2051621_43	PHROG	phrog_706	NA	unknown function
UHGV-2051621_43	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-2051621_43	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-2051621_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2051621_43	Structural annotation	PF06854	NA	NA
UHGV-2051621_44	PHROG	phrog_9700	NA	unknown function
UHGV-2051621_44	UniRef90	UniRef90_UPI001B3C6D17	leucine-rich repeat protein	NA
UHGV-2051621_44	eggNOG-mapper	476272.RUMHYD_01979	NA	NA
UHGV-2051621_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2051621_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2051621_45	UniRef90	UniRef90_UPI0015705FD5	helix-turn-helix domain-containing protein	NA
UHGV-2051621_45	eggNOG-mapper	391295.SSU05_1527	transcriptional	NA
UHGV-2051621_45	PADLOC	Control_protein_00002	control protein	RM
UHGV-2051621_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2051621_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2051621_45	Structural annotation	PF01381, MF_02017, NF041951, COG1396	NA	NA
UHGV-2051621_46	UniRef90	UniRef90_A0A1C5V1G9	Predicted transcriptional regulator	NA
UHGV-2051621_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2051621_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2051621_48	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-2051621_48	UniRef90	UniRef90_UPI00189A9092	ORF6N domain-containing protein	NA
UHGV-2051621_48	eggNOG-mapper	1567011.A0A0A7RUE5_9VIRU	DNA binding	NA
UHGV-2051621_48	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2051621_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2051621_49	UniRef90	UniRef90_A0A1C6JAZ8	Phage-related protein	NA
UHGV-2051621_49	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-2051621_49	COG	COG5412	Phage-related protein	NA
UHGV-2051621_50	PHROG	phrog_1194	NA	unknown function
UHGV-2051621_50	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-2051621_50	Pfam	PF20458	NA	DUF6711
UHGV-2051621_50	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2051621_51	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2051621_52	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-2051621_52	Structural annotation	PF01664	NA	NA
UHGV-2051621_54	PHROG	phrog_1863	NA	unknown function
UHGV-2051621_54	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-2051621_54	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-2051621_55	PHROG	phrog_443	holin	lysis
UHGV-2051621_55	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-2051621_55	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-2051621_55	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2051621_55	Structural annotation	PF16945	NA	NA
UHGV-2051621_56	PHROG	phrog_18591	NA	unknown function
UHGV-2051621_56	eggNOG-mapper	272624.lpg2561	NA	NA
UHGV-2051621_57	PHROG	phrog_918	NA	unknown function
UHGV-2051621_57	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-2051621_57	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-2051621_57	Pfam	PF19791	NA	DUF6275
UHGV-2051621_57	Structural annotation	PF19791	NA	NA
UHGV-2051621_58	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2051621_58	PHROG	phrog_20388	endolysin	lysis
UHGV-2051621_58	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2051621_58	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2051621_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2051621_58	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2051621_58	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2051621_58	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-2051621_59	KOfam	K07271	licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]	NA
UHGV-2051621_59	UniRef90	UniRef90_A0A3D3D7N5	Epimerase domain-containing protein	NA
UHGV-2051621_59	eggNOG-mapper	697329.Rumal_2992	LicD family	NA
UHGV-2051621_59	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-2051621_59	Pfam	PF04991	LicD family	LicD
UHGV-2051621_59	COG	COG3475	Phosphorylcholine metabolism protein LicD	NA
UHGV-2051621_60	KOfam	K08678	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]	NA
UHGV-2051621_60	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-2051621_60	UniRef90	UniRef90_A0A2N0UQV5	dTDP-glucose 4,6-dehydratase	NA
UHGV-2051621_60	eggNOG-mapper	877411.JMMA01000002_gene2599	epimerase dehydratase	NA
UHGV-2051621_60	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-2051621_60	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-2051621_60	Structural annotation	PF16363, MF_01166, TIGR01181, COG0451	NA	NA