UHGV-2051789

Genome information

Genome length 42,236 bps

CDS count 71

Completeness 99.90% (high-quality)

geNomad score 0.9632

Prediction confidence Confident

Genome information
Genome ID	UHGV-2051789
vOTU ID	vOTU-065539
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029238\|Ga0168766_100285\|provirus_39895_82130
BioSample	SAMEA2737747
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9632
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.52
Jumbo phage	No

Genome content
Genome length	42,236 bps
GC content	28.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.49%
Average CDS length	541.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2051789_1	UniRef90	UniRef90_UPI001E315B09	NA	NA
UHGV-2051789_1	eggNOG-mapper	1410630.JNKP01000003_gene1034	NA	NA
UHGV-2051789_1	Pfam	PF18936	NA	DUF5684
UHGV-2051789_2	UniRef90	UniRef90_R5XJU8	HAM1/NUDIX domain-containing protein	NA
UHGV-2051789_2	eggNOG-mapper	515622.bpr_I2356	Ham1 family	NA
UHGV-2051789_2	Pfam	PF01725	Ham1 family	Ham1p_like
UHGV-2051789_2	COG	COG0127	Inosine/xanthosine triphosphate pyrophosphatase, all-alpha NTP-PPase family	NA
UHGV-2051789_4	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-2051789_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2051789_4	UniRef90	UniRef90_R5YVI1	HTH-type transcriptional regulator SinR	NA
UHGV-2051789_4	eggNOG-mapper	1034347.CAHJ01000062_gene1015	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2051789_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2051789_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2051789_4	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-2051789_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2051789_4	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-2051789_5	UniRef90	UniRef90_A0A1D8MRT7	HTH cro/C1-type domain-containing protein	NA
UHGV-2051789_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2051789_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2051789_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2051789_6	Structural annotation	PF02583, COG1937	NA	NA
UHGV-2051789_7	PHROG	phrog_9659	NA	unknown function
UHGV-2051789_8	PHROG	phrog_2329	NA	unknown function
UHGV-2051789_8	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-2051789_9	UniRef90	UniRef90_A0A1Q6LC62	SH3b domain-containing protein	NA
UHGV-2051789_9	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-2051789_9	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-2051789_9	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2051789_9	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-2051789_9	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA
UHGV-2051789_11	PHROG	phrog_2310	NA	unknown function
UHGV-2051789_11	eggNOG-mapper	1415774.U728_3409	NA	NA
UHGV-2051789_12	KOfam	K24248	EMID1; EMI domain-containing protein 1	NA
UHGV-2051789_12	PHROG	phrog_5073	tail fiber protein	tail
UHGV-2051789_13	PHROG	phrog_23208	virion structural protein	head and packaging
UHGV-2051789_13	Structural annotation	PF10651, NF033814	NA	NA
UHGV-2051789_14	PHROG	phrog_7064	tail protein	tail
UHGV-2051789_16	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-2051789_16	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-2051789_17	Structural annotation	PF20747	NA	NA
UHGV-2051789_18	PHROG	phrog_20385	minor tail protein	tail
UHGV-2051789_18	UniRef90	UniRef90_UPI0013797660	phage baseplate protein	NA
UHGV-2051789_18	eggNOG-mapper	1139219.I569_00095	Baseplate protein	NA
UHGV-2051789_19	KOfam	K16808	NUMA1; nuclear mitotic apparatus protein 1	NA
UHGV-2051789_19	PHROG	phrog_17321	NA	unknown function
UHGV-2051789_19	UniRef90	UniRef90_R7FHV4	Phage tail tape measure protein family	NA
UHGV-2051789_19	eggNOG-mapper	1123309.AQYB01000019_gene903	Phage-related minor tail protein	NA
UHGV-2051789_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2051789_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2051789_19	COG	COG5283	Phage-related tail protein	NA
UHGV-2051789_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2051789_21	PHROG	phrog_5319	outer membrane protein	other
UHGV-2051789_21	UniRef90	UniRef90_A0A3S1E765	Zinc ribbon domain-containing protein	NA
UHGV-2051789_21	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-2051789_21	COG	COG3103	NA	NA
UHGV-2051789_21	Structural annotation	PF03843, MF_01959, TIGR00752, COG3065	NA	NA
UHGV-2051789_22	UniRef90	UniRef90_A0A2C1RHH7	Phage tail protein	NA
UHGV-2051789_22	eggNOG-mapper	1027396.LMOSA_21460	NA	NA
UHGV-2051789_22	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2051789_23	PHROG	phrog_5509	neck protein	connector
UHGV-2051789_23	UniRef90	UniRef90_A0A0E0URY3	Gp9 protein	NA
UHGV-2051789_23	eggNOG-mapper	1220589.CD32_01700	NA	NA
UHGV-2051789_24	PHROG	phrog_5910	NA	unknown function
UHGV-2051789_25	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-2051789_25	UniRef90	UniRef90_A0A5R9F414	Head-tail adaptor protein	NA
UHGV-2051789_25	eggNOG-mapper	1027396.LMOSA_21431	NA	NA
UHGV-2051789_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2051789_26	PHROG	phrog_749	NA	unknown function
UHGV-2051789_26	UniRef90	UniRef90_Q8W603	Gp6 protein	NA
UHGV-2051789_26	eggNOG-mapper	1027396.LMOSA_21430	NA	NA
UHGV-2051789_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2051789_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-2051789_27	UniRef90	UniRef90_A0A0C3H6H2	Major capsid protein	NA
UHGV-2051789_27	eggNOG-mapper	864178.E2ELI5_9CAUD	peptidase activity	NA
UHGV-2051789_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2051789_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2051789_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2051789_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2051789_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2051789_28	UniRef90	UniRef90_A0A7U4LNK5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2051789_28	eggNOG-mapper	1295642.H839_15963	Serine dehydrogenase proteinase	NA
UHGV-2051789_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2051789_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2051789_28	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2051789_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-2051789_29	UniRef90	UniRef90_UPI001CD73BD1	phage portal protein	NA
UHGV-2051789_29	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-2051789_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2051789_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2051789_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2051789_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2051789_30	UniRef90	UniRef90_A0A1B7KUQ8	Terminase	NA
UHGV-2051789_30	eggNOG-mapper	1450694.BTS2_0545	Terminase	NA
UHGV-2051789_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2051789_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2051789_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2051789_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2051789_31	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2051789_31	UniRef90	UniRef90_UPI0015C65CE4	RNA polymerase subunit sigma-70	NA
UHGV-2051789_31	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-2051789_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2051789_33	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2051789_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2051789_33	UniRef90	UniRef90_A0A0E0UW20	Gp65	NA
UHGV-2051789_33	eggNOG-mapper	330396.A8ATF8_9CAUD	HNH endonuclease	NA
UHGV-2051789_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2051789_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2051789_37	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-2051789_38	PHROG	phrog_6716	NA	unknown function
UHGV-2051789_39	Structural annotation	PF14001, MF_01194, TIGR03318, COG5475	NA	NA
UHGV-2051789_44	PHROG	phrog_24552	NA	unknown function
UHGV-2051789_46	PHROG	phrog_8684	NA	unknown function
UHGV-2051789_46	UniRef90	UniRef90_R7FK73	YopX domain-containing protein	NA
UHGV-2051789_46	eggNOG-mapper	1423816.BACQ01000027_gene952	YopX protein	NA
UHGV-2051789_46	Pfam	PF09643	YopX protein	YopX
UHGV-2051789_46	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2051789_46	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2051789_47	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-2051789_48	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-2051789_48	PHROG	phrog_359	DNA methyltransferase	other
UHGV-2051789_48	UniRef90	UniRef90_A0A424N484	DNA methyltransferase	NA
UHGV-2051789_48	eggNOG-mapper	1235800.C819_00509	MT-A70	NA
UHGV-2051789_48	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-2051789_48	Pfam	PF05063	MT-A70	MT-A70
UHGV-2051789_48	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-2051789_48	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-2051789_49	Structural annotation	PF15188	NA	NA
UHGV-2051789_51	PHROG	phrog_1123	NA	unknown function
UHGV-2051789_51	eggNOG-mapper	1560313.A0A0D3MSU0_9CAUD	NA	NA
UHGV-2051789_51	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-2051789_53	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2051789_53	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2051789_53	UniRef90	UniRef90_R5ZPV6	DNA helicase	NA
UHGV-2051789_53	eggNOG-mapper	521460.Athe_0882	Participates in initiation and elongation during chromosome replication	NA
UHGV-2051789_53	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2051789_53	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2051789_53	COG	COG0305	Replicative DNA helicase	NA
UHGV-2051789_53	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2051789_54	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2051789_54	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-2051789_54	UniRef90	UniRef90_A0A2Z3KM22	Prephenate dehydrogenase	NA
UHGV-2051789_54	eggNOG-mapper	999425.HMPREF9186_02013	Phage replisome organizer, N-terminal domain protein	NA
UHGV-2051789_54	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2051789_54	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2051789_54	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2051789_54	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2051789_54	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-2051789_57	PHROG	phrog_2329	NA	unknown function
UHGV-2051789_57	UniRef90	UniRef90_UPI0011C23EAC	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-2051789_57	eggNOG-mapper	634994.GCWU000323_00539	NA	NA
UHGV-2051789_57	Structural annotation	MF_01193, NF007312, COG2336	NA	NA
UHGV-2051789_59	PHROG	phrog_585	NA	unknown function
UHGV-2051789_59	UniRef90	UniRef90_UPI001F1D2BA2	NA	NA
UHGV-2051789_59	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-2051789_59	Pfam	PF10711	NA	DUF2513
UHGV-2051789_59	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-2051789_61	PHROG	phrog_7566	NA	unknown function
UHGV-2051789_62	PHROG	phrog_1389	NA	unknown function
UHGV-2051789_62	eggNOG-mapper	536233.CLO_1823	NA	NA
UHGV-2051789_62	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-2051789_67	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-2051789_68	UniRef90	UniRef90_A0A3D1PJT4	HTH cro/C1-type domain-containing protein	NA
UHGV-2051789_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2051789_68	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2051789_68	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2051789_69	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2051789_69	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2051789_69	UniRef90	UniRef90_A0A3D1PLJ6	HTH cro/C1-type domain-containing protein	NA
UHGV-2051789_69	eggNOG-mapper	1391647.AVSV01000039_gene1077	Helix-turn-helix XRE-family like proteins	NA
UHGV-2051789_69	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2051789_69	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2051789_69	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2051789_70	PHROG	phrog_87	metallo-protease	other
UHGV-2051789_70	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-2051789_70	eggNOG-mapper	515635.Dtur_1293	Zn peptidase	NA
UHGV-2051789_70	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2051789_70	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2051789_70	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2051789_71	KOfam	K14059	int; integrase	NA
UHGV-2051789_71	PHROG	phrog_1	integrase	integration and excision
UHGV-2051789_71	UniRef90	UniRef90_UPI0015C5C81A	site-specific integrase	NA
UHGV-2051789_71	eggNOG-mapper	1298920.KI911353_gene4877	Belongs to the 'phage' integrase family	NA
UHGV-2051789_71	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2051789_71	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2051789_71	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2051789_71	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA