UHGV-2052025

Genome information

vOTU vOTU-019599

Genome length 28,342 bps

CDS count 46

Completeness 68.64% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-2052025
vOTU ID	vOTU-019599
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029329\|Ga0242807_101329
BioSample	SAMN05545054
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.45
Jumbo phage	No

Genome content
Genome length	28,342 bps
GC content	58.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	88.78%
Average CDS length	550.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2052025_1	KOfam	K11927	rhlE; ATP-dependent RNA helicase RhlE [EC:3.6.4.13]	NA
UHGV-2052025_1	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2052025_1	UniRef90	UniRef90_A0A0W7TQY5	DEAD/DEAH box helicase	NA
UHGV-2052025_1	eggNOG-mapper	665956.HMPREF1032_02817	Belongs to the DEAD box helicase family	NA
UHGV-2052025_1	PADLOC	BrxHI_00004	BrxHI	BREX
UHGV-2052025_1	Pfam	PF00270	DEAD/DEAH box helicase	DEAD
UHGV-2052025_1	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2052025_1	COG	COG0513	Superfamily II DNA and RNA helicase	NA
UHGV-2052025_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2052025_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2052025_2	UniRef90	UniRef90_G9RSZ1	HTH cro/C1-type domain-containing protein	NA
UHGV-2052025_2	eggNOG-mapper	665956.HMPREF1032_04076	Peptidase S24-like	NA
UHGV-2052025_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2052025_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2052025_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2052025_2	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-2052025_3	UniRef90	UniRef90_G9RSZ2	HTH cro/C1-type domain-containing protein	NA
UHGV-2052025_3	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2052025_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2052025_3	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-2052025_10	PHROG	phrog_310	transposase	integration and excision
UHGV-2052025_10	UniRef90	UniRef90_G9RN28	Integrase catalytic domain-containing protein	NA
UHGV-2052025_10	eggNOG-mapper	665956.HMPREF1032_01647	Mu transposase, C-terminal	NA
UHGV-2052025_10	Pfam	PF00665	Integrase core domain	rve
UHGV-2052025_10	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-2052025_10	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-2052025_10	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-2052025_11	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-2052025_11	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-2052025_11	UniRef90	UniRef90_G9RN27	AAA domain-containing protein	NA
UHGV-2052025_11	eggNOG-mapper	665956.HMPREF1032_01646	AAA domain	NA
UHGV-2052025_11	Pfam	PF13401	AAA domain	AAA_22
UHGV-2052025_11	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-2052025_13	PHROG	phrog_36365	NA	unknown function
UHGV-2052025_13	eggNOG-mapper	665956.HMPREF1032_02975	NA	NA
UHGV-2052025_14	UniRef90	UniRef90_A0A143XK80	DZANK-type domain-containing protein	NA
UHGV-2052025_15	PHROG	phrog_2717	NA	unknown function
UHGV-2052025_15	eggNOG-mapper	665956.HMPREF1032_04088	NA	NA
UHGV-2052025_15	Structural annotation	PF19962, COG1579	NA	NA
UHGV-2052025_16	UniRef90	UniRef90_UPI001967CCF1	helix-turn-helix domain-containing protein	NA
UHGV-2052025_16	Structural annotation	PF04218, NF040595, COG1710	NA	NA
UHGV-2052025_19	Structural annotation	PF06657	NA	NA
UHGV-2052025_21	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2052025_21	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-2052025_21	eggNOG-mapper	665956.HMPREF1032_01636	Bacteriophage Mu Gam like protein	NA
UHGV-2052025_21	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-2052025_21	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-2052025_21	Structural annotation	PF07352, COG4396	NA	NA
UHGV-2052025_22	PHROG	phrog_286	NA	unknown function
UHGV-2052025_22	UniRef90	UniRef90_UPI000A7FF2BA	NA	NA
UHGV-2052025_22	eggNOG-mapper	665956.HMPREF1032_01635	NA	NA
UHGV-2052025_22	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-2052025_22	Structural annotation	PF06252	NA	NA
UHGV-2052025_23	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-2052025_23	UniRef90	UniRef90_D4LE09	Mor transcription activator family	NA
UHGV-2052025_23	eggNOG-mapper	663278.Ethha_0084	Mor transcription activator	NA
UHGV-2052025_23	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-2052025_23	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-2052025_23	Structural annotation	PF08765, COG5566	NA	NA
UHGV-2052025_24	UniRef90	UniRef90_A0A372V349	NA	NA
UHGV-2052025_24	eggNOG-mapper	665956.HMPREF1032_01633	NA	NA
UHGV-2052025_25	PHROG	phrog_25462	NA	unknown function
UHGV-2052025_25	UniRef90	UniRef90_A0A349GP70	Type VI secretion protein	NA
UHGV-2052025_25	eggNOG-mapper	665956.HMPREF1032_01632	NA	NA
UHGV-2052025_25	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-2052025_26	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-2052025_26	UniRef90	UniRef90_UPI000AA50A3B	NA	NA
UHGV-2052025_26	eggNOG-mapper	665956.HMPREF1032_02960	NA	NA
UHGV-2052025_26	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-2052025_26	Structural annotation	PF11985	NA	NA
UHGV-2052025_27	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-2052025_27	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-2052025_27	UniRef90	UniRef90_UPI001966E24A	antitermination protein NusG	NA
UHGV-2052025_27	eggNOG-mapper	665956.HMPREF1032_01630	Transcription termination factor nusG	NA
UHGV-2052025_27	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-2052025_27	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-2052025_27	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-2052025_29	PHROG	phrog_24579	terminase small subunit	head and packaging
UHGV-2052025_29	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-2052025_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2052025_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2052025_30	UniRef90	UniRef90_A0A0D8J425	Terminase	NA
UHGV-2052025_30	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-2052025_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2052025_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2052025_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2052025_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2052025_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2052025_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-2052025_32	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-2052025_32	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-2052025_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2052025_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2052025_33	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-2052025_33	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-2052025_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2052025_33	COG	COG2369	NA	NA
UHGV-2052025_33	Structural annotation	PF06152	NA	NA
UHGV-2052025_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2052025_35	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-2052025_35	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-2052025_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2052025_35	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2052025_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-2052025_36	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2052025_36	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2052025_37	PHROG	phrog_10541	NA	unknown function
UHGV-2052025_37	UniRef90	UniRef90_UPI001967F4C6	Rho termination factor N-terminal domain-containing protein	NA
UHGV-2052025_37	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-2052025_37	COG	COG5492	NA	NA
UHGV-2052025_37	Structural annotation	PF09124	NA	NA
UHGV-2052025_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2052025_38	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-2052025_38	Pfam	PF13262	NA	DUF4054
UHGV-2052025_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2052025_40	UniRef90	UniRef90_UPI0019D0AD4B	minor capsid protein	NA
UHGV-2052025_40	eggNOG-mapper	936375.HMPREF1152_1079	NA	NA
UHGV-2052025_40	Structural annotation	PF11114	NA	NA
UHGV-2052025_41	PHROG	phrog_3266	tail completion	connector
UHGV-2052025_41	eggNOG-mapper	1160721.RBI_II00533	NA	NA
UHGV-2052025_41	Structural annotation	PF20765	NA	NA
UHGV-2052025_42	PHROG	phrog_820	major tail protein	tail
UHGV-2052025_42	UniRef90	UniRef90_UPI001140540A	capsid protein	NA
UHGV-2052025_42	eggNOG-mapper	997296.PB1_16179	domain, Protein	NA
UHGV-2052025_42	COG	COG5492	NA	NA
UHGV-2052025_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2052025_44	PHROG	phrog_706	NA	unknown function
UHGV-2052025_44	UniRef90	UniRef90_A0A1I0GR35	Bacteriophage Gp15 protein	NA
UHGV-2052025_44	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-2052025_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2052025_45	PHROG	phrog_23464	NA	unknown function
UHGV-2052025_45	eggNOG-mapper	926561.KB900622_gene636	phage tail tape measure protein	NA
UHGV-2052025_45	COG	COG5283	Phage-related tail protein	NA
UHGV-2052025_45	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA