UHGV-2052177

Genome information

Genome length 38,044 bps

CDS count 58

Completeness 99.57% (high-quality)

geNomad score 0.9701

Prediction confidence Confident

Genome information
Genome ID	UHGV-2052177
vOTU ID	vOTU-007701
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029336\|Ga0243752_100016\|provirus_156478_194521
BioSample	SAMN05971455
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.57% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9701
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.63
Jumbo phage	No

Genome content
Genome length	38,044 bps
GC content	49.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.03%
Average CDS length	614.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2052177_2	UniRef90	UniRef90_R6TP76	RHH_1 domain-containing protein	NA
UHGV-2052177_2	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-2052177_5	PHROG	phrog_263	holin	lysis
UHGV-2052177_5	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-2052177_5	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-2052177_5	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2052177_5	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2052177_5	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-2052177_6	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2052177_6	UniRef90	UniRef90_UPI000CFA6BAA	NA	NA
UHGV-2052177_6	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-2052177_6	Pfam	PF14359	NA	DUF4406
UHGV-2052177_6	Structural annotation	PF14359, COG3613	NA	NA
UHGV-2052177_7	PHROG	phrog_9428	NA	unknown function
UHGV-2052177_7	UniRef90	UniRef90_A0A3D5TMQ6	Serine/threonine protein kinase	NA
UHGV-2052177_7	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-2052177_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2052177_8	PHROG	phrog_435	endolysin	lysis
UHGV-2052177_8	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-2052177_8	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-2052177_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2052177_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2052177_8	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-2052177_9	PHROG	phrog_918	NA	unknown function
UHGV-2052177_9	UniRef90	UniRef90_UPI000FFEACEB	NA	NA
UHGV-2052177_9	eggNOG-mapper	272626.lin0103	NA	NA
UHGV-2052177_9	Pfam	PF19791	NA	DUF6275
UHGV-2052177_9	Structural annotation	PF19791	NA	NA
UHGV-2052177_10	PHROG	phrog_27545	NA	unknown function
UHGV-2052177_10	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-2052177_10	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-2052177_12	Structural annotation	PF02973	NA	NA
UHGV-2052177_13	Structural annotation	PF10651	NA	NA
UHGV-2052177_15	PHROG	phrog_6616	tail protein	tail
UHGV-2052177_15	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-2052177_15	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-2052177_15	COG	COG4926	Phage-related protein	NA
UHGV-2052177_15	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2052177_16	PHROG	phrog_1194	NA	unknown function
UHGV-2052177_16	UniRef90	UniRef90_A0A0R1Q5P9	NA	NA
UHGV-2052177_16	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-2052177_16	Pfam	PF20458	NA	DUF6711
UHGV-2052177_16	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2052177_17	PHROG	phrog_23726	NA	unknown function
UHGV-2052177_17	UniRef90	UniRef90_A0A0M1UTM9	Cell surface domain protein	NA
UHGV-2052177_17	eggNOG-mapper	428125.CLOLEP_01549	cell wall binding repeat	NA
UHGV-2052177_17	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-2052177_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2052177_18	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-2052177_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2052177_19	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-2052177_19	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-2052177_19	Structural annotation	PF19591	NA	NA
UHGV-2052177_20	PHROG	phrog_158	major tail protein	tail
UHGV-2052177_20	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-2052177_20	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-2052177_20	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-2052177_20	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2052177_21	Structural annotation	PF05657	NA	NA
UHGV-2052177_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2052177_22	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-2052177_22	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2052177_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2052177_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2052177_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2052177_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2052177_24	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2052177_24	UniRef90	UniRef90_R6I6I7	NA	NA
UHGV-2052177_24	eggNOG-mapper	268407.PWYN_03015	NA	NA
UHGV-2052177_25	PHROG	phrog_283	major head protein	head and packaging
UHGV-2052177_25	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-2052177_25	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-2052177_25	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2052177_25	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2052177_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2052177_26	UniRef90	UniRef90_UPI001651708C	phage scaffolding protein	NA
UHGV-2052177_26	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-2052177_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2052177_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2052177_28	UniRef90	UniRef90_A0A3D2QEP6	Phage_Mu_F domain-containing protein	NA
UHGV-2052177_28	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-2052177_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2052177_28	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-2052177_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2052177_28	COG	COG2369	NA	NA
UHGV-2052177_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2052177_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-2052177_29	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-2052177_29	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2052177_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2052177_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2052177_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2052177_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2052177_30	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-2052177_30	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-2052177_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2052177_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2052177_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2052177_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2052177_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2052177_31	PHROG	phrog_17390	NA	unknown function
UHGV-2052177_31	UniRef90	UniRef90_UPI001E61FF52	terminase small subunit	NA
UHGV-2052177_31	eggNOG-mapper	1158614.I592_02434	Terminase small subunit	NA
UHGV-2052177_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2052177_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2052177_32	PHROG	phrog_20533	NA	unknown function
UHGV-2052177_32	UniRef90	UniRef90_A0A7C6U4T3	PLD phosphodiesterase domain-containing protein	NA
UHGV-2052177_32	eggNOG-mapper	1123058.KB894251_gene2369	NA	NA
UHGV-2052177_32	Structural annotation	PF17941, MF_01918, NF010490, COG3886	NA	NA
UHGV-2052177_33	PHROG	phrog_12389	NA	unknown function
UHGV-2052177_33	eggNOG-mapper	1196322.A370_03932	NA	NA
UHGV-2052177_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2052177_34	PHROG	phrog_12862	NA	unknown function
UHGV-2052177_34	UniRef90	UniRef90_UPI000A26DFF4	site-specific DNA-methyltransferase	NA
UHGV-2052177_34	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2052177_34	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-2052177_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2052177_34	COG	COG0863	DNA modification methylase	NA
UHGV-2052177_34	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2052177_35	PHROG	phrog_11237	NA	unknown function
UHGV-2052177_35	eggNOG-mapper	537013.CLOSTMETH_01096	NA	NA
UHGV-2052177_35	Structural annotation	TIGR01636	NA	NA
UHGV-2052177_36	PHROG	phrog_8684	NA	unknown function
UHGV-2052177_36	UniRef90	UniRef90_A0A3D4KYC5	YopX domain-containing protein	NA
UHGV-2052177_36	eggNOG-mapper	742767.HMPREF9456_03352	YopX protein	NA
UHGV-2052177_36	Pfam	PF09643	YopX protein	YopX
UHGV-2052177_36	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2052177_36	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2052177_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2052177_38	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-2052177_38	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-2052177_39	PHROG	phrog_3922	major head protein	head and packaging
UHGV-2052177_39	UniRef90	UniRef90_A0A3D5TQ97	Phage major capsid protein	NA
UHGV-2052177_39	eggNOG-mapper	537013.CLOSTMETH_01228	NA	NA
UHGV-2052177_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2052177_40	PHROG	phrog_24518	NA	unknown function
UHGV-2052177_40	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-2052177_42	PHROG	phrog_3136	NA	unknown function
UHGV-2052177_42	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-2052177_42	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-2052177_42	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2052177_42	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-2052177_46	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2052177_46	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2052177_46	UniRef90	UniRef90_A0A3D1I1E6	ParB domain-containing protein	NA
UHGV-2052177_46	eggNOG-mapper	445972.ANACOL_00162	ParB-like nuclease domain	NA
UHGV-2052177_46	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2052177_46	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2052177_46	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-2052177_46	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2052177_47	PHROG	phrog_824	NA	unknown function
UHGV-2052177_47	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-2052177_47	eggNOG-mapper	642492.Clole_0728	VRR-NUC domain	NA
UHGV-2052177_47	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2052177_47	Structural annotation	PF08774, COG1996	NA	NA
UHGV-2052177_51	PHROG	phrog_924	NA	unknown function
UHGV-2052177_51	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-2052177_51	Pfam	PF04448	NA	DUF551
UHGV-2052177_52	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2052177_52	PHROG	phrog_18750	NA	unknown function
UHGV-2052177_52	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-2052177_52	eggNOG-mapper	1203606.HMPREF1526_01876	Cell wall hydrolase	NA
UHGV-2052177_52	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-2052177_52	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-2052177_52	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-2052177_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2052177_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2052177_57	UniRef90	UniRef90_UPI001E627292	helix-turn-helix domain-containing protein	NA
UHGV-2052177_57	eggNOG-mapper	1117108.PAALTS15_10030	TRANSCRIPTIONal	NA
UHGV-2052177_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2052177_57	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2052177_57	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-2052177_58	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2052177_58	PHROG	phrog_95	integrase	integration and excision
UHGV-2052177_58	UniRef90	UniRef90_A0A415Y8B5	Recombinase family protein	NA
UHGV-2052177_58	eggNOG-mapper	1160721.RBI_I01606	NA	NA
UHGV-2052177_58	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2052177_58	Pfam	PF07508	Recombinase	Recombinase
UHGV-2052177_58	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2052177_58	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2052177_58	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA