UHGV-2054247

Genome information

Genome length 30,150 bps

CDS count 42

Completeness 66.06% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-2054247
vOTU ID	vOTU-022162
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029331\|Ga0243780_100013\|provirus_140_30289
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.08
Jumbo phage	No

Genome content
Genome length	30,150 bps
GC content	42.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.13%
Average CDS length	678.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2054247_1	PHROG	phrog_874	NA	unknown function
UHGV-2054247_1	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-2054247_1	eggNOG-mapper	1235793.C809_02214	NA	NA
UHGV-2054247_1	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2054247_4	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2054247_4	UniRef90	UniRef90_A0A6L6XK67	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2054247_4	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-2054247_4	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2054247_4	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-2054247_6	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2054247_6	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2054247_6	UniRef90	UniRef90_A0A413Z5T1	DNA adenine methylase	NA
UHGV-2054247_6	eggNOG-mapper	1511.CLOST_1547	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2054247_6	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-2054247_6	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2054247_6	COG	COG0338	DNA-adenine methylase	NA
UHGV-2054247_6	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-2054247_7	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2054247_7	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2054247_7	UniRef90	UniRef90_A0A3R5ZDV7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2054247_7	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-2054247_7	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2054247_7	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2054247_7	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2054247_7	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2054247_8	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-2054247_9	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-2054247_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2054247_11	UniRef90	UniRef90_A0A173S7S0	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA
UHGV-2054247_11	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-2054247_11	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2054247_11	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2054247_11	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2054247_12	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2054247_12	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2054247_12	UniRef90	UniRef90_A0A6L6XD66	Phage portal protein	NA
UHGV-2054247_12	eggNOG-mapper	642492.Clole_2766	Terminase Small Subunit	NA
UHGV-2054247_12	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2054247_12	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2054247_12	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2054247_12	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-2054247_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2054247_13	PHROG	phrog_10250	NA	unknown function
UHGV-2054247_13	UniRef90	UniRef90_A0A173S6P4	Phage terminase, large subunit, PBSX family	NA
UHGV-2054247_13	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-2054247_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2054247_13	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2054247_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2054247_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-2054247_13	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2054247_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-2054247_14	UniRef90	UniRef90_A0A173S8B4	Phage portal protein, SPP1 family	NA
UHGV-2054247_14	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2054247_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2054247_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2054247_15	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2054247_15	UniRef90	UniRef90_A0A173S657	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-2054247_15	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2054247_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2054247_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2054247_15	COG	COG2369	NA	NA
UHGV-2054247_15	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2054247_17	Structural annotation	PF20124	NA	NA
UHGV-2054247_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2054247_18	UniRef90	UniRef90_A0A173S7H6	Phage minor structural protein GP20	NA
UHGV-2054247_18	eggNOG-mapper	1042156.CXIVA_00720	Phage minor structural protein GP20	NA
UHGV-2054247_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2054247_19	PHROG	phrog_247	major head protein	head and packaging
UHGV-2054247_19	UniRef90	UniRef90_A0A1Q6SQL3	Coat protein	NA
UHGV-2054247_19	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-2054247_19	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-2054247_20	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2054247_20	UniRef90	UniRef90_A0A173S6L1	Phage gp6-like head-tail connector protein	NA
UHGV-2054247_20	eggNOG-mapper	1567014.A0A0A7RTX9_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-2054247_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2054247_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2054247_21	PHROG	phrog_615	head-tail adaptor	connector
UHGV-2054247_21	UniRef90	UniRef90_UPI001C0FD815	ABC transporter ATP-binding protein	NA
UHGV-2054247_21	eggNOG-mapper	1123511.KB905868_gene179	NA	NA
UHGV-2054247_21	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-2054247_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2054247_22	UniRef90	UniRef90_A0A1H9YI34	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2054247_22	eggNOG-mapper	742740.HMPREF9474_02350	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2054247_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2054247_22	Structural annotation	PF04883, COG5005	NA	NA
UHGV-2054247_23	PHROG	phrog_525	NA	unknown function
UHGV-2054247_23	eggNOG-mapper	742740.HMPREF9474_02349	NA	NA
UHGV-2054247_23	Pfam	PF20765	NA	DUF6838
UHGV-2054247_23	Structural annotation	PF20765, COG5003	NA	NA
UHGV-2054247_24	PHROG	phrog_966	NA	unknown function
UHGV-2054247_24	eggNOG-mapper	642492.Clole_2751	NA	NA
UHGV-2054247_25	PHROG	phrog_279	tail sheath	tail
UHGV-2054247_25	UniRef90	UniRef90_A0A173S672	Phage tail sheath protein	NA
UHGV-2054247_25	eggNOG-mapper	742740.HMPREF9474_02347	Phage tail sheath C-terminal domain	NA
UHGV-2054247_25	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-2054247_25	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2054247_25	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2054247_25	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-2054247_26	PHROG	phrog_365	tail protein	tail
UHGV-2054247_26	UniRef90	UniRef90_A0A173S7M6	Phage-like element PBSX protein xkdM	NA
UHGV-2054247_26	eggNOG-mapper	1235793.C809_01941	Phage tail tube protein	NA
UHGV-2054247_26	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2054247_26	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-2054247_27	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2054247_27	UniRef90	UniRef90_A0A173S656	Phage XkdN-like protein	NA
UHGV-2054247_27	eggNOG-mapper	1235793.C809_01942	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2054247_27	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2054247_27	Structural annotation	PF08890, COG4518	NA	NA
UHGV-2054247_28	PHROG	phrog_20560	NA	unknown function
UHGV-2054247_28	eggNOG-mapper	931276.Cspa_c07820	NA	NA
UHGV-2054247_29	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-2054247_29	UniRef90	UniRef90_A0A173S6B7	Phage-related minor tail protein	NA
UHGV-2054247_29	eggNOG-mapper	742740.HMPREF9474_02344	tape measure	NA
UHGV-2054247_29	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2054247_29	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2054247_29	COG	COG5281	Phage-related minor tail protein	NA
UHGV-2054247_29	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2054247_30	PHROG	phrog_380	endolysin	lysis
UHGV-2054247_30	UniRef90	UniRef90_A0A173S7Q9	LysM domain	NA
UHGV-2054247_30	eggNOG-mapper	1408437.JNJN01000045_gene580	LysM domain	NA
UHGV-2054247_30	Pfam	PF01476	LysM domain	LysM
UHGV-2054247_30	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2054247_30	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-2054247_31	PHROG	phrog_400	tail protein	tail
UHGV-2054247_31	UniRef90	UniRef90_A0A173S911	CHAP domain	NA
UHGV-2054247_31	eggNOG-mapper	1042156.CXIVA_01680	PFAM Phage late control gene D protein (GPD)	NA
UHGV-2054247_31	Pfam	PF05257	CHAP domain	CHAP
UHGV-2054247_31	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-2054247_31	Structural annotation	PF14594, PF00877, NF033848, TIGR02594, COG4379, COG3738	NA	NA
UHGV-2054247_32	PHROG	phrog_579	NA	unknown function
UHGV-2054247_32	UniRef90	UniRef90_A0A417J5A5	NA	NA
UHGV-2054247_32	eggNOG-mapper	768710.DesyoDRAFT_5200	NA	NA
UHGV-2054247_32	Pfam	PF10844	NA	DUF2577
UHGV-2054247_32	Structural annotation	PF10844	NA	NA
UHGV-2054247_33	PHROG	phrog_120	baseplate protein	tail
UHGV-2054247_33	UniRef90	UniRef90_A0A844DV15	NA	NA
UHGV-2054247_33	eggNOG-mapper	397288.C806_00119	NA	NA
UHGV-2054247_33	Pfam	PF10934	NA	DUF2634
UHGV-2054247_33	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2054247_33	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-2054247_34	PHROG	phrog_6	baseplate protein	tail
UHGV-2054247_34	UniRef90	UniRef90_A0A1Q6LSE6	Baseplate_J domain-containing protein	NA
UHGV-2054247_34	eggNOG-mapper	1235793.C809_01948	Baseplate J-like protein	NA
UHGV-2054247_34	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2054247_34	COG	COG3299	NA	NA
UHGV-2054247_34	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2054247_35	PHROG	phrog_521	tail protein	tail
UHGV-2054247_35	UniRef90	UniRef90_UPI001F4D57D3	YmfQ family protein	NA
UHGV-2054247_35	eggNOG-mapper	1321779.HMPREF1984_01289	NA	NA
UHGV-2054247_35	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2054247_35	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2054247_35	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2054247_36	eggNOG-mapper	537007.BLAHAN_05238	translation initiation factor activity	NA
UHGV-2054247_36	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2054247_37	eggNOG-mapper	610130.Closa_0760	NA	NA
UHGV-2054247_38	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2054247_38	Structural annotation	NF040910	NA	NA
UHGV-2054247_39	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2054247_39	PHROG	phrog_1	integrase	integration and excision
UHGV-2054247_39	UniRef90	UniRef90_UPI001EE81DF9	tyrosine-type recombinase/integrase	NA
UHGV-2054247_39	eggNOG-mapper	1235790.C805_00378	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2054247_39	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2054247_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2054247_39	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2054247_39	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2054247_41	PHROG	phrog_937	hemolysin	other
UHGV-2054247_42	PHROG	phrog_443	holin	lysis
UHGV-2054247_42	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-2054247_42	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-2054247_42	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2054247_42	Structural annotation	PF16945	NA	NA