UHGV-2055229

Genome information

Genome length 31,465 bps

CDS count 47

Completeness 97.76% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-2055229
vOTU ID	vOTU-007814
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029381\|Ga0243902_1000001\|provirus_687285_722423
BioSample	SAMN05971614
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.76% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.63
Jumbo phage	No

Genome content
Genome length	31,465 bps
GC content	51.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.57%
Average CDS length	630.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2055229_3	UniRef90	UniRef90_F5L211	Conserved domain protein	NA
UHGV-2055229_3	Structural annotation	PF19923, NF009981, COG0355	NA	NA
UHGV-2055229_4	eggNOG-mapper	1280668.ATVT01000007_gene1190	sequence-specific DNA binding	NA
UHGV-2055229_4	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-2055229_6	UniRef90	UniRef90_R6J3S0	Peptidase_C39_2 domain-containing protein	NA
UHGV-2055229_6	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-2055229_6	Structural annotation	PF11814, NF033920, COG4990	NA	NA
UHGV-2055229_7	PHROG	phrog_263	holin	lysis
UHGV-2055229_7	UniRef90	UniRef90_A0A316RBA3	Phage holin	NA
UHGV-2055229_7	eggNOG-mapper	1121344.JHZO01000003_gene952	SPP1 phage holin	NA
UHGV-2055229_7	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2055229_7	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2055229_7	Structural annotation	PF04688	NA	NA
UHGV-2055229_8	PHROG	phrog_4105	NA	unknown function
UHGV-2055229_8	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-2055229_9	UniRef90	UniRef90_R6J123	ATP synthase B chain	NA
UHGV-2055229_10	UniRef90	UniRef90_A0A316R9D9	BppU_N domain-containing protein	NA
UHGV-2055229_10	eggNOG-mapper	641107.CDLVIII_4353	NA	NA
UHGV-2055229_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2055229_10	Structural annotation	PF00386, NF033147	NA	NA
UHGV-2055229_11	PHROG	phrog_13289	tail protein	tail
UHGV-2055229_11	UniRef90	UniRef90_A0A316RM27	Prophage_tail domain-containing protein	NA
UHGV-2055229_11	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-2055229_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2055229_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2055229_11	COG	COG4926	Phage-related protein	NA
UHGV-2055229_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2055229_12	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-2055229_12	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-2055229_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2055229_12	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2055229_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-2055229_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2055229_13	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2055229_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2055229_13	UniRef90	UniRef90_A0A316R7C3	Phage tail tape measure protein	NA
UHGV-2055229_13	eggNOG-mapper	35241.Q9AYV8_BPTU2	peptidoglycan catabolic process	NA
UHGV-2055229_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2055229_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2055229_14	PHROG	phrog_25901	NA	unknown function
UHGV-2055229_14	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-2055229_15	PHROG	phrog_13494	NA	unknown function
UHGV-2055229_15	eggNOG-mapper	742741.HMPREF9475_00431	NA	NA
UHGV-2055229_16	PHROG	phrog_88	major tail protein	tail
UHGV-2055229_16	UniRef90	UniRef90_A0A316RAJ2	Major tail protein	NA
UHGV-2055229_16	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-2055229_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2055229_16	COG	COG5492	NA	NA
UHGV-2055229_16	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2055229_17	PHROG	phrog_78	tail terminator	connector
UHGV-2055229_17	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-2055229_17	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2055229_18	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-2055229_18	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-2055229_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2055229_18	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-2055229_19	UniRef90	UniRef90_A0A316R8D9	Phage head-tail adapter protein	NA
UHGV-2055229_19	eggNOG-mapper	195103.CPF_1582	Phage head-tail adaptor	NA
UHGV-2055229_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2055229_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2055229_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2055229_20	UniRef90	UniRef90_A0A316R9F5	Phage gp6-like head-tail connector protein	NA
UHGV-2055229_20	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-2055229_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2055229_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2055229_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2055229_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-2055229_21	UniRef90	UniRef90_A0A316RM35	Phage major capsid protein	NA
UHGV-2055229_21	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2055229_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2055229_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2055229_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2055229_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2055229_22	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2055229_22	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2055229_22	UniRef90	UniRef90_A0A316R8I3	Clp protease	NA
UHGV-2055229_22	eggNOG-mapper	742741.HMPREF9475_00424	Clp protease	NA
UHGV-2055229_22	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2055229_22	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2055229_22	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2055229_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-2055229_23	UniRef90	UniRef90_A0A316R7D3	Phage portal protein	NA
UHGV-2055229_23	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-2055229_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2055229_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2055229_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2055229_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2055229_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2055229_24	UniRef90	UniRef90_A0A316R7M0	Terminase large subunit	NA
UHGV-2055229_24	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-2055229_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2055229_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2055229_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2055229_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2055229_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2055229_25	UniRef90	UniRef90_A0A316RD76	Phage terminase small subunit P27 family	NA
UHGV-2055229_25	eggNOG-mapper	411468.CLOSCI_01487	Phage terminase, small subunit	NA
UHGV-2055229_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2055229_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2055229_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2055229_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2055229_26	UniRef90	UniRef90_A0A858BSQ3	HNH endonuclease	NA
UHGV-2055229_26	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-2055229_27	PHROG	phrog_1558	NA	unknown function
UHGV-2055229_27	UniRef90	UniRef90_A0A316RAK3	Sigma70_r4_2 domain-containing protein	NA
UHGV-2055229_27	eggNOG-mapper	411459.RUMOBE_01740	NA	NA
UHGV-2055229_27	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2055229_27	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-2055229_31	PHROG	phrog_15609	NA	unknown function
UHGV-2055229_31	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-2055229_31	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2055229_32	PHROG	phrog_8470	NA	unknown function
UHGV-2055229_32	UniRef90	UniRef90_UPI001B3C667E	PcfJ domain-containing protein	NA
UHGV-2055229_32	eggNOG-mapper	1395513.P343_08070	PcfJ-like protein	NA
UHGV-2055229_32	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2055229_32	Structural annotation	PF14284	NA	NA
UHGV-2055229_33	PHROG	phrog_35860	NA	unknown function
UHGV-2055229_33	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2055229_33	eggNOG-mapper	457412.RSAG_01173	PcfK-like protein	NA
UHGV-2055229_33	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-2055229_33	Structural annotation	PF14058	NA	NA
UHGV-2055229_36	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2055229_36	UniRef90	UniRef90_R6ISF1	NA	NA
UHGV-2055229_36	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-2055229_36	Pfam	PF06356	NA	DUF1064
UHGV-2055229_36	Structural annotation	PF06356	NA	NA
UHGV-2055229_37	PHROG	phrog_34937	NA	unknown function
UHGV-2055229_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2055229_38	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-2055229_38	Structural annotation	PF21578	NA	NA
UHGV-2055229_40	PHROG	phrog_33952	NA	unknown function
UHGV-2055229_41	PHROG	phrog_668	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2055229_42	PHROG	phrog_585	NA	unknown function
UHGV-2055229_42	UniRef90	UniRef90_R6J381	PF10711 family protein	NA
UHGV-2055229_42	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-2055229_42	Pfam	PF10711	NA	DUF2513
UHGV-2055229_42	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-2055229_44	UniRef90	UniRef90_A0A316R8G0	HTH cro/C1-type domain-containing protein	NA
UHGV-2055229_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2055229_44	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2055229_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2055229_45	UniRef90	UniRef90_A0A1Q6LC39	HTH cro/C1-type domain-containing protein	NA
UHGV-2055229_45	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2055229_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2055229_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2055229_45	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2055229_46	PHROG	phrog_87	metallo-protease	other
UHGV-2055229_46	UniRef90	UniRef90_A0A316RCR6	Peptidase_M78 domain-containing protein	NA
UHGV-2055229_46	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-2055229_46	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2055229_46	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2055229_46	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2055229_47	PHROG	phrog_1847	NA	unknown function
UHGV-2055229_47	UniRef90	UniRef90_R6INK9	T5orf172 domain-containing protein	NA
UHGV-2055229_47	eggNOG-mapper	1232443.BAIA02000080_gene905	T5orf172	NA
UHGV-2055229_47	Pfam	PF13250	NA	DUF4041
UHGV-2055229_47	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2055229_47	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2055229_47	Structural annotation	PF13250, PF19824	NA	NA