UHGV-2056177

Genome information

Genome length 38,221 bps

CDS count 57

Completeness 56.42% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-2056177
vOTU ID	vOTU-017337
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029394\|Ga0243997_1000056\|provirus_137112_175332
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	56.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.51
Jumbo phage	No

Genome content
Genome length	38,221 bps
GC content	53.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.99%
Average CDS length	637.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2056177_1	eggNOG-mapper	568816.Acin_1213	NA	NA
UHGV-2056177_3	PHROG	phrog_10797	NA	unknown function
UHGV-2056177_3	UniRef90	UniRef90_A0A0X8K8T8	Glycoprotease	NA
UHGV-2056177_3	eggNOG-mapper	568816.Acin_1214	NA	NA
UHGV-2056177_3	Structural annotation	PF06531	NA	NA
UHGV-2056177_4	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-2056177_4	PHROG	phrog_822	amidase	lysis
UHGV-2056177_4	UniRef90	UniRef90_UPI0005EAD4E7	peptidoglycan recognition protein family protein	NA
UHGV-2056177_4	eggNOG-mapper	568816.Acin_1215	Ami_2	NA
UHGV-2056177_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2056177_4	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2056177_4	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2056177_5	eggNOG-mapper	568816.Acin_1216	NA	NA
UHGV-2056177_7	eggNOG-mapper	568816.Acin_1218	NA	NA
UHGV-2056177_8	KOfam	K06871	NA	NA
UHGV-2056177_8	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-2056177_8	UniRef90	UniRef90_G4Q8B3	Radical SAM core domain-containing protein	NA
UHGV-2056177_8	eggNOG-mapper	568816.Acin_1219	radical SAM	NA
UHGV-2056177_8	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-2056177_8	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-2056177_8	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-2056177_8	Structural annotation	PF04055, MF_00660, TIGR04136, COG0641	NA	NA
UHGV-2056177_9	Structural annotation	PF02832	NA	NA
UHGV-2056177_10	Structural annotation	PF13403, NF038136	NA	NA
UHGV-2056177_12	UniRef90	UniRef90_A0A6N7VL88	TNFR-Cys domain-containing protein	NA
UHGV-2056177_13	KOfam	K06871	NA	NA
UHGV-2056177_13	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-2056177_13	UniRef90	UniRef90_G4Q8B6	Radical SAM core domain-containing protein	NA
UHGV-2056177_13	eggNOG-mapper	568816.Acin_1222	radical SAM	NA
UHGV-2056177_13	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-2056177_13	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-2056177_13	NCBIFam	TIGR04085.1	SPASM domain-containing protein	NA
UHGV-2056177_13	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-2056177_14	PHROG	phrog_7032	tail fiber protein	tail
UHGV-2056177_14	eggNOG-mapper	568816.Acin_1223	alcohol dehydrogenase	NA
UHGV-2056177_14	COG	COG1063	Threonine dehydrogenase or related Zn-dependent dehydrogenase	NA
UHGV-2056177_14	Structural annotation	PF11962, COG5471	NA	NA
UHGV-2056177_15	Structural annotation	PF16640, NF011805, COG5456	NA	NA
UHGV-2056177_16	eggNOG-mapper	568816.Acin_1225	NA	NA
UHGV-2056177_17	eggNOG-mapper	568816.Acin_1226	NA	NA
UHGV-2056177_17	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2056177_18	UniRef90	UniRef90_A0A3A5R8N1	Phage tail protein	NA
UHGV-2056177_18	eggNOG-mapper	568816.Acin_1227	Phage tail protein	NA
UHGV-2056177_18	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-2056177_19	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2056177_19	UniRef90	UniRef90_G4Q8C2	TMP_3 domain-containing protein	NA
UHGV-2056177_19	eggNOG-mapper	568816.Acin_1228	tape measure	NA
UHGV-2056177_19	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2056177_19	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2056177_19	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2056177_19	Structural annotation	PF20155, TIGR01760, NF033930, COG3941	NA	NA
UHGV-2056177_20	eggNOG-mapper	568816.Acin_1229	NA	NA
UHGV-2056177_21	Structural annotation	PF11836	NA	NA
UHGV-2056177_22	PHROG	phrog_1407	major tail protein	tail
UHGV-2056177_22	UniRef90	UniRef90_A0A3B9DV80	Phage major tail protein, TP901-1 family	NA
UHGV-2056177_22	eggNOG-mapper	568816.Acin_1231	Phage tail tube protein	NA
UHGV-2056177_22	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2056177_22	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2056177_22	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-2056177_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2056177_23	eggNOG-mapper	568816.Acin_1232	NA	NA
UHGV-2056177_23	Structural annotation	PF08873, COG5003	NA	NA
UHGV-2056177_24	PHROG	phrog_19017	NA	unknown function
UHGV-2056177_24	eggNOG-mapper	568816.Acin_1233	NA	NA
UHGV-2056177_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2056177_25	UniRef90	UniRef90_U7UGG7	Tail protein, HK97 family	NA
UHGV-2056177_25	eggNOG-mapper	568816.Acin_1234	NA	NA
UHGV-2056177_25	Structural annotation	TIGR01725	NA	NA
UHGV-2056177_26	PHROG	phrog_267	major head protein	head and packaging
UHGV-2056177_26	UniRef90	UniRef90_A0A6N7W2V3	P22 coat protein-protein 5 domain protein	NA
UHGV-2056177_26	eggNOG-mapper	568816.Acin_1235	P22 coat protein-protein 5 domain protein	NA
UHGV-2056177_26	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2056177_27	eggNOG-mapper	568816.Acin_1236	NA	NA
UHGV-2056177_27	Structural annotation	PF06810	NA	NA
UHGV-2056177_29	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-2056177_29	UniRef90	UniRef90_UPI00041DDA5E	polymorphic toxin type 50 domain-containing protein	NA
UHGV-2056177_29	eggNOG-mapper	568816.Acin_1239	NA	NA
UHGV-2056177_29	Structural annotation	PF21814	NA	NA
UHGV-2056177_30	PHROG	phrog_145	portal protein	head and packaging
UHGV-2056177_30	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-2056177_30	eggNOG-mapper	568816.Acin_1240	NA	NA
UHGV-2056177_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2056177_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2056177_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2056177_31	UniRef90	UniRef90_G4Q8N3	Phage terminase large subunit	NA
UHGV-2056177_31	eggNOG-mapper	568816.Acin_1241	Phage terminase large subunit	NA
UHGV-2056177_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2056177_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2056177_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2056177_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-2056177_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2056177_32	PHROG	phrog_2412	NA	unknown function
UHGV-2056177_32	eggNOG-mapper	568816.Acin_1242	NA	NA
UHGV-2056177_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2056177_33	eggNOG-mapper	568816.Acin_1244	NA	NA
UHGV-2056177_33	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-2056177_35	eggNOG-mapper	568816.Acin_1246	NA	NA
UHGV-2056177_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2056177_38	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2056177_38	UniRef90	UniRef90_C0W9K9	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-2056177_38	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-2056177_38	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2056177_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2056177_38	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2056177_40	PHROG	phrog_9804	NA	unknown function
UHGV-2056177_40	UniRef90	UniRef90_A0A1C5TFI8	Inhibitor_G39P domain-containing protein	NA
UHGV-2056177_40	eggNOG-mapper	568816.Acin_1250	NA	NA
UHGV-2056177_40	AcrCatalog	cluster_137185	NA	NA
UHGV-2056177_40	Structural annotation	PF11417	NA	NA
UHGV-2056177_41	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2056177_41	UniRef90	UniRef90_G4Q8P3	DnaB_2 domain-containing protein	NA
UHGV-2056177_41	eggNOG-mapper	568816.Acin_1251	DnaD domain protein	NA
UHGV-2056177_41	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2056177_41	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2056177_41	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2056177_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2056177_42	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2056177_42	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2056177_42	UniRef90	UniRef90_A0A6N7W2R8	Recombinase RecT	NA
UHGV-2056177_42	eggNOG-mapper	568816.Acin_1252	Recombinase, phage RecT family	NA
UHGV-2056177_42	Pfam	PF03837	RecT family	RecT
UHGV-2056177_42	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2056177_42	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2056177_42	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2056177_43	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2056177_43	UniRef90	UniRef90_G4Q8P5	YqaJ domain-containing protein	NA
UHGV-2056177_43	eggNOG-mapper	568816.Acin_1253	YqaJ viral recombinase family protein	NA
UHGV-2056177_43	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2056177_43	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2056177_43	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2056177_43	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2056177_44	UniRef90	UniRef90_G4Q8P6	LysM domain-containing protein	NA
UHGV-2056177_44	eggNOG-mapper	568816.Acin_1254	LysM domain	NA
UHGV-2056177_44	COG	COG1388	LysM repeat	NA
UHGV-2056177_44	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-2056177_45	UniRef90	UniRef90_G4Q8P7	HTH cro/C1-type domain-containing protein	NA
UHGV-2056177_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2056177_45	Structural annotation	PF01381, PF05339, MF_00535, NF041951, COG3655, COG3093	NA	NA
UHGV-2056177_47	UniRef90	UniRef90_G4Q8P9	HTH_17 domain-containing protein	NA
UHGV-2056177_47	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2056177_47	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2056177_47	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2056177_47	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-2056177_50	UniRef90	UniRef90_G4Q8Q2	HTH cro/C1-type domain-containing protein	NA
UHGV-2056177_50	eggNOG-mapper	568816.Acin_1260	sequence-specific DNA binding	NA
UHGV-2056177_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2056177_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2056177_50	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2056177_51	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2056177_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2056177_51	UniRef90	UniRef90_G4Q8Q3	HTH cro/C1-type domain-containing protein	NA
UHGV-2056177_51	eggNOG-mapper	568816.Acin_1261	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2056177_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2056177_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2056177_51	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2056177_52	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-2056177_52	Structural annotation	PF06114	NA	NA
UHGV-2056177_53	UniRef90	UniRef90_UPI000D0F63D9	SAP domain-containing protein	NA
UHGV-2056177_53	eggNOG-mapper	568816.Acin_1262	NA	NA
UHGV-2056177_54	eggNOG-mapper	568816.Acin_1263	NA	NA
UHGV-2056177_54	AcrCatalog	cluster_25916	NA	NA
UHGV-2056177_54	Structural annotation	PF16538	NA	NA
UHGV-2056177_55	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2056177_55	UniRef90	UniRef90_A0A6N7VLC3	Abi family protein	NA
UHGV-2056177_55	eggNOG-mapper	568816.Acin_1264	Abi-like protein	NA
UHGV-2056177_55	PADLOC	AbiD	AbiD	Abi
UHGV-2056177_55	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2056177_55	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2056177_55	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2056177_56	KOfam	K14059	int; integrase	NA
UHGV-2056177_56	PHROG	phrog_1	integrase	integration and excision
UHGV-2056177_56	UniRef90	UniRef90_G4Q8Q7	Site-specific recombinase	NA
UHGV-2056177_56	eggNOG-mapper	568816.Acin_1265	Belongs to the 'phage' integrase family	NA
UHGV-2056177_56	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2056177_56	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2056177_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2056177_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2056177_56	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA