UHGV-2057329

Genome information

Genome length 45,554 bps

CDS count 65

Completeness 96.18% (high-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-2057329
vOTU ID	vOTU-013593
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029374\|Ga0243945_1000271\|provirus_1_45554
BioSample	SAMN05971657
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.83
Jumbo phage	No

Genome content
Genome length	45,554 bps
GC content	44.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.99%
Average CDS length	641.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2057329_1	eggNOG-mapper	591001.Acfer_1129	NA	NA
UHGV-2057329_2	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-2057329_2	PHROG	phrog_8036	NA	unknown function
UHGV-2057329_2	UniRef90	UniRef90_A0A2S0M7T2	Damage-inducible protein D	NA
UHGV-2057329_2	eggNOG-mapper	1131451.O1K_18831	BRO family, N-terminal domain	NA
UHGV-2057329_2	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-2057329_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2057329_2	COG	COG3617	Prophage antirepressor	NA
UHGV-2057329_2	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-2057329_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2057329_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2057329_3	UniRef90	UniRef90_A0A848EUK9	Helix-turn-helix domain-containing protein	NA
UHGV-2057329_3	eggNOG-mapper	1111454.HMPREF1250_0095	Peptidase S24-like	NA
UHGV-2057329_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2057329_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2057329_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2057329_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2057329_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2057329_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2057329_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2057329_4	UniRef90	UniRef90_UPI0006779504	helix-turn-helix domain-containing protein	NA
UHGV-2057329_4	eggNOG-mapper	697284.ERIC2_c10400	sequence-specific DNA binding	NA
UHGV-2057329_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2057329_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2057329_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2057329_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2057329_9	PHROG	phrog_9842	NA	unknown function
UHGV-2057329_9	UniRef90	UniRef90_UPI0018C7739B	NA	NA
UHGV-2057329_9	eggNOG-mapper	935837.JAEK01000054_gene1482	NA	NA
UHGV-2057329_9	Pfam	PF10386	NA	DUF2441
UHGV-2057329_9	Structural annotation	PF10386, NF033144	NA	NA
UHGV-2057329_11	PHROG	phrog_25045	NA	unknown function
UHGV-2057329_11	UniRef90	UniRef90_UPI001D005F74	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2057329_11	eggNOG-mapper	1064535.MELS_1078	LysM domain	NA
UHGV-2057329_11	Pfam	PF01476	LysM domain	LysM
UHGV-2057329_11	COG	COG1388	LysM repeat	NA
UHGV-2057329_11	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-2057329_16	PHROG	phrog_1672	NA	unknown function
UHGV-2057329_16	UniRef90	UniRef90_S7HT72	NA	NA
UHGV-2057329_16	eggNOG-mapper	1443122.Z958_05695	NA	NA
UHGV-2057329_17	eggNOG-mapper	1064535.MELS_1077	transposase activity	NA
UHGV-2057329_17	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2057329_20	Structural annotation	PF14058	NA	NA
UHGV-2057329_21	PHROG	phrog_8470	NA	unknown function
UHGV-2057329_21	UniRef90	UniRef90_UPI00073F3B84	PcfJ domain-containing protein	NA
UHGV-2057329_21	eggNOG-mapper	717606.PaecuDRAFT_3105	PcfJ-like protein	NA
UHGV-2057329_21	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2057329_22	PHROG	phrog_15609	NA	unknown function
UHGV-2057329_22	UniRef90	UniRef90_UPI00073F64A5	NA	NA
UHGV-2057329_22	eggNOG-mapper	1232428.CAVO010000003_gene1018	NA	NA
UHGV-2057329_22	Pfam	PF11300	NA	DUF3102
UHGV-2057329_22	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-2057329_22	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2057329_23	PHROG	phrog_236	nucleotide kinase	other
UHGV-2057329_23	UniRef90	UniRef90_UPI001F0F7AF9	NA	NA
UHGV-2057329_23	eggNOG-mapper	706434.HMPREF9429_00388	NA	NA
UHGV-2057329_23	Pfam	PF11753	NA	DUF3310
UHGV-2057329_23	Structural annotation	PF11753	NA	NA
UHGV-2057329_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2057329_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2057329_26	UniRef90	UniRef90_UPI0013B408A0	single-stranded DNA-binding protein	NA
UHGV-2057329_26	eggNOG-mapper	1123371.ATXH01000015_gene1651	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2057329_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2057329_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2057329_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2057329_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2057329_26	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-2057329_27	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2057329_27	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2057329_27	UniRef90	UniRef90_A0A2S0MAB6	dUTP diphosphatase	NA
UHGV-2057329_27	eggNOG-mapper	706434.HMPREF9429_00398	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-2057329_27	Pfam	PF00692	dUTPase	dUTPase
UHGV-2057329_27	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2057329_28	PHROG	phrog_11947	NA	unknown function
UHGV-2057329_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2057329_29	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-2057329_29	eggNOG-mapper	1064535.MELS_1085	NA	NA
UHGV-2057329_29	Structural annotation	PF21578, NF033538	NA	NA
UHGV-2057329_30	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2057329_30	UniRef90	UniRef90_UPI000930BD90	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2057329_30	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-2057329_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2057329_30	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2057329_32	PHROG	phrog_37395	NA	unknown function
UHGV-2057329_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2057329_33	UniRef90	UniRef90_UPI0008EE302B	NA	NA
UHGV-2057329_33	eggNOG-mapper	1111454.HMPREF1250_0009	NA	NA
UHGV-2057329_33	Pfam	PF07374	NA	DUF1492
UHGV-2057329_33	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2057329_34	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-2057329_34	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-2057329_34	UniRef90	UniRef90_A0A840PJQ8	Phage terminase Nu1 subunit (DNA packaging protein)	NA
UHGV-2057329_34	eggNOG-mapper	1273103.NM10_03166	NA	NA
UHGV-2057329_34	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2057329_34	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-2057329_35	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-2057329_35	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-2057329_35	UniRef90	UniRef90_S7HS25	Phage terminase large subunit (GpA)	NA
UHGV-2057329_35	eggNOG-mapper	1273103.NM10_03161	Phage terminase large subunit (GpA)	NA
UHGV-2057329_35	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-2057329_35	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-2057329_35	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-2057329_35	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-2057329_35	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-2057329_36	PHROG	phrog_20934	NA	unknown function
UHGV-2057329_36	Structural annotation	PF19645	NA	NA
UHGV-2057329_37	PHROG	phrog_21	portal protein	head and packaging
UHGV-2057329_37	UniRef90	UniRef90_S7HSA9	Phage portal protein	NA
UHGV-2057329_37	eggNOG-mapper	1273103.NM10_03151	Phage portal protein	NA
UHGV-2057329_37	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-2057329_37	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-2057329_37	COG	COG5511	Phage capsid protein	NA
UHGV-2057329_37	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-2057329_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2057329_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2057329_38	UniRef90	UniRef90_S7J3I6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2057329_38	eggNOG-mapper	1273103.NM10_03146	Belongs to the peptidase S14 family	NA
UHGV-2057329_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2057329_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2057329_38	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-2057329_39	PHROG	phrog_49	head decoration	head and packaging
UHGV-2057329_39	UniRef90	UniRef90_UPI0018C49529	head decoration protein	NA
UHGV-2057329_39	eggNOG-mapper	1273103.NM10_03141	Bacteriophage lambda head decoration protein D	NA
UHGV-2057329_39	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-2057329_39	Structural annotation	PF02924	NA	NA
UHGV-2057329_40	PHROG	phrog_29	major head protein	head and packaging
UHGV-2057329_40	UniRef90	UniRef90_A0A259UD55	Phage major capsid protein E	NA
UHGV-2057329_40	eggNOG-mapper	1273103.NM10_03136	Phage major capsid protein E	NA
UHGV-2057329_40	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2057329_40	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-2057329_41	PHROG	phrog_36232	NA	unknown function
UHGV-2057329_42	PHROG	phrog_36202	NA	unknown function
UHGV-2057329_43	eggNOG-mapper	1273103.NM10_03121	NA	NA
UHGV-2057329_43	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-2057329_44	PHROG	phrog_17431	NA	unknown function
UHGV-2057329_44	eggNOG-mapper	1273103.NM10_03116	NA	NA
UHGV-2057329_45	PHROG	phrog_290	minor tail protein	tail
UHGV-2057329_45	UniRef90	UniRef90_UPI00069D7D9F	phage tail tube protein	NA
UHGV-2057329_45	eggNOG-mapper	1273103.NM10_03111	NA	NA
UHGV-2057329_45	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-2057329_45	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-2057329_46	PHROG	phrog_33144	NA	unknown function
UHGV-2057329_46	eggNOG-mapper	1273103.NM10_03106	NA	NA
UHGV-2057329_47	PHROG	phrog_680	tail length tape measure protein	tail
UHGV-2057329_47	eggNOG-mapper	1121440.AUMA01000011_gene2396	NA	NA
UHGV-2057329_47	Pfam	PF08809	NA	DUF1799
UHGV-2057329_48	PHROG	phrog_30973	NA	unknown function
UHGV-2057329_48	UniRef90	UniRef90_UPI0018C794CE	transglycosylase SLT domain-containing protein	NA
UHGV-2057329_48	eggNOG-mapper	1273103.NM10_03096	nuclear chromosome segregation	NA
UHGV-2057329_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2057329_48	Structural annotation	TIGR01760	NA	NA
UHGV-2057329_49	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-2057329_49	UniRef90	UniRef90_UPI001032B7DB	phage tail protein	NA
UHGV-2057329_49	eggNOG-mapper	1273103.NM10_03091	NA	NA
UHGV-2057329_49	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-2057329_50	PHROG	phrog_18	minor tail protein	tail
UHGV-2057329_50	UniRef90	UniRef90_S7HS09	Phage-like protein	NA
UHGV-2057329_50	eggNOG-mapper	1273103.NM10_03086	Phage minor tail protein L	NA
UHGV-2057329_50	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-2057329_50	COG	COG4672	Phage tail protein	NA
UHGV-2057329_50	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-2057329_51	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-2057329_51	PHROG	phrog_329	minor tail protein	tail
UHGV-2057329_51	UniRef90	UniRef90_S7HS93	NlpC/P60 domain-containing protein	NA
UHGV-2057329_51	eggNOG-mapper	1273103.NM10_03081	NlpC/P60 family	NA
UHGV-2057329_51	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2057329_51	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2057329_51	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-2057329_52	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-2057329_52	UniRef90	UniRef90_S7HS92	Phage-tail_3 domain-containing protein	NA
UHGV-2057329_52	eggNOG-mapper	1273103.NM10_03076	cellulase activity	NA
UHGV-2057329_52	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-2057329_52	COG	COG1511	NA	NA
UHGV-2057329_52	Structural annotation	PF13550, PF00041, PF16323, NF040662, COG4733	NA	NA
UHGV-2057329_53	PHROG	phrog_5717	tail protein	tail
UHGV-2057329_53	UniRef90	UniRef90_UPI0018C721A4	tail fiber protein	NA
UHGV-2057329_53	eggNOG-mapper	445971.ANASTE_02088	NA	NA
UHGV-2057329_55	PHROG	phrog_24267	NA	unknown function
UHGV-2057329_55	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-2057329_55	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2057329_56	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2057329_57	eggNOG-mapper	1232428.CAVO010000067_gene418	NA	NA
UHGV-2057329_57	Structural annotation	PF14301	NA	NA
UHGV-2057329_58	KOfam	K14059	int; integrase	NA
UHGV-2057329_58	PHROG	phrog_1	integrase	integration and excision
UHGV-2057329_58	UniRef90	UniRef90_A0A641X3J6	Tyrosine-type recombinase/integrase	NA
UHGV-2057329_58	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-2057329_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2057329_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2057329_58	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2057329_59	PHROG	phrog_4105	NA	unknown function
UHGV-2057329_59	eggNOG-mapper	706434.HMPREF9429_00642	NA	NA
UHGV-2057329_60	PHROG	phrog_28789	NA	unknown function
UHGV-2057329_60	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-2057329_60	eggNOG-mapper	1273103.NM10_03036	NA	NA
UHGV-2057329_61	eggNOG-mapper	1327935.A0A060AMX0_9CAUD	NA	NA
UHGV-2057329_62	KOfam	K07273	acm; lysozyme	NA
UHGV-2057329_62	PHROG	phrog_6745	endolysin	lysis
UHGV-2057329_62	UniRef90	UniRef90_A0A0U1L0T6	Glycosyl hydrolase, family 25	NA
UHGV-2057329_62	eggNOG-mapper	1232428.CAVO010000067_gene417	Glycosyl hydrolases family 25	NA
UHGV-2057329_62	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2057329_62	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2057329_62	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-2057329_63	PHROG	phrog_10797	NA	unknown function
UHGV-2057329_63	UniRef90	UniRef90_A0A1B1I041	Glycoprotease	NA
UHGV-2057329_63	eggNOG-mapper	1273103.NM10_03026	NA	NA
UHGV-2057329_64	PHROG	phrog_10797	NA	unknown function
UHGV-2057329_64	eggNOG-mapper	568816.Acin_1214	NA	NA
UHGV-2057329_65	PHROG	phrog_2655	excisionase	integration and excision
UHGV-2057329_65	UniRef90	UniRef90_A0A2S0MA68	HTH_59 domain-containing protein	NA
UHGV-2057329_65	eggNOG-mapper	1111454.HMPREF1250_0298	NA	NA
UHGV-2057329_65	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-2057329_65	Structural annotation	PF20038, TIGR01764	NA	NA