UHGV-2057335

Genome information

Genome length 33,490 bps

CDS count 53

Completeness 94.29% (high-quality)

geNomad score 0.9673

Prediction confidence Confident

Genome information
Genome ID	UHGV-2057335
vOTU ID	vOTU-008529
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029374\|Ga0243945_1000124\|provirus_27522_65285
BioSample	SAMN05971657
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.29% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9673
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.03
Jumbo phage	No

Genome content
Genome length	33,490 bps
GC content	46.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.24%
Average CDS length	592.76 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2057335_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2057335_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2057335_1	UniRef90	UniRef90_UPI001D05C6CD	recombinase family protein	NA
UHGV-2057335_1	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-2057335_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2057335_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2057335_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2057335_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2057335_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2057335_2	PHROG	phrog_1847	NA	unknown function
UHGV-2057335_2	UniRef90	UniRef90_UPI00034E5741	NA	NA
UHGV-2057335_2	eggNOG-mapper	1064535.MELS_1070	NA	NA
UHGV-2057335_2	Pfam	PF13250	NA	DUF4041
UHGV-2057335_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2057335_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2057335_2	Structural annotation	PF13250, NF041454	NA	NA
UHGV-2057335_3	PHROG	phrog_20936	NA	unknown function
UHGV-2057335_3	UniRef90	UniRef90_A0A6N3AVX2	Peptidase_M78 domain-containing protein	NA
UHGV-2057335_3	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-2057335_3	Structural annotation	PF06114	NA	NA
UHGV-2057335_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2057335_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2057335_4	UniRef90	UniRef90_UPI00034E499C	helix-turn-helix transcriptional regulator	NA
UHGV-2057335_4	eggNOG-mapper	706434.HMPREF9429_00594	Helix-turn-helix XRE-family like proteins	NA
UHGV-2057335_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2057335_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2057335_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2057335_5	UniRef90	UniRef90_UPI00189C117A	toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-2057335_5	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-2057335_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2057335_9	PHROG	phrog_14367	NA	unknown function
UHGV-2057335_9	UniRef90	UniRef90_UPI001D065B32	LysM domain-containing protein	NA
UHGV-2057335_9	eggNOG-mapper	568816.Acin_1254	LysM domain	NA
UHGV-2057335_9	Pfam	PF01476	LysM domain	LysM
UHGV-2057335_9	COG	COG1388	LysM repeat	NA
UHGV-2057335_9	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-2057335_11	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2057335_11	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2057335_11	UniRef90	UniRef90_UPI001D060172	AAA family ATPase	NA
UHGV-2057335_11	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-2057335_11	PADLOC	AAA_15	NA	NA
UHGV-2057335_11	Pfam	PF13476	AAA domain	AAA_23
UHGV-2057335_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2057335_11	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2057335_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2057335_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2057335_12	UniRef90	UniRef90_UPI001D097B3F	recombinase RecT	NA
UHGV-2057335_12	eggNOG-mapper	1121085.AUCI01000010_gene513	RecT family	NA
UHGV-2057335_12	Pfam	PF03837	RecT family	RecT
UHGV-2057335_12	Structural annotation	PF03837, NF007351	NA	NA
UHGV-2057335_13	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2057335_13	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2057335_13	UniRef90	UniRef90_UPI001D06240E	MBL fold metallo-hydrolase	NA
UHGV-2057335_13	eggNOG-mapper	330397.A8ATK9_9CAUD	hydrolase activity	NA
UHGV-2057335_13	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-2057335_13	dbAPIS	APIS058	NA	NA
UHGV-2057335_13	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2057335_14	PHROG	phrog_9403	NA	unknown function
UHGV-2057335_15	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2057335_15	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2057335_15	UniRef90	UniRef90_UPI0003FCA6D4	DnaD domain protein	NA
UHGV-2057335_15	eggNOG-mapper	1273103.NM10_01164	DnaD domain protein	NA
UHGV-2057335_15	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2057335_15	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2057335_15	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2057335_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2057335_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2057335_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2057335_16	UniRef90	UniRef90_UPI001D07AA17	DnaA/Hda family protein	NA
UHGV-2057335_16	eggNOG-mapper	1111454.HMPREF1250_0279	DNA replication protein	NA
UHGV-2057335_16	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-2057335_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2057335_16	Structural annotation	PF01695, MF_00377, NF005378, COG1484	NA	NA
UHGV-2057335_17	PHROG	phrog_6568	NA	unknown function
UHGV-2057335_17	eggNOG-mapper	742733.HMPREF9469_05046	NA	NA
UHGV-2057335_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2057335_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2057335_19	UniRef90	UniRef90_UPI001D0689F9	single-stranded DNA-binding protein	NA
UHGV-2057335_19	eggNOG-mapper	1280688.AUJB01000009_gene1658	Single-strand binding protein family	NA
UHGV-2057335_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2057335_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2057335_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2057335_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2057335_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2057335_20	Structural annotation	MF_00773	NA	NA
UHGV-2057335_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2057335_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2057335_22	UniRef90	UniRef90_UPI001D082351	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2057335_22	eggNOG-mapper	1211814.CAPG01000074_gene3465	Endodeoxyribonuclease RusA	NA
UHGV-2057335_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2057335_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2057335_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2057335_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2057335_23	UniRef90	UniRef90_A0A346B157	RNA polymerase subunit sigma-70	NA
UHGV-2057335_23	eggNOG-mapper	1111454.HMPREF1250_0269	NA	NA
UHGV-2057335_23	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-2057335_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2057335_24	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2057335_24	UniRef90	UniRef90_UPI001D07EF7D	HNH endonuclease	NA
UHGV-2057335_24	eggNOG-mapper	1414720.CBYM010000001_gene694	HNH nucleases	NA
UHGV-2057335_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2057335_25	PHROG	phrog_13845	NA	unknown function
UHGV-2057335_25	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-2057335_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2057335_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2057335_26	UniRef90	UniRef90_UPI000406183D	terminase large subunit	NA
UHGV-2057335_26	eggNOG-mapper	1399942.U3PBG5_9CAUD	Phage Terminase	NA
UHGV-2057335_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2057335_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2057335_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2057335_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-2057335_27	UniRef90	UniRef90_UPI0003FDC1C6	phage portal protein	NA
UHGV-2057335_27	eggNOG-mapper	742738.HMPREF9460_01364	Portal protein	NA
UHGV-2057335_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2057335_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2057335_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2057335_27	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2057335_28	KOfam	K06904	NA	NA
UHGV-2057335_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2057335_28	UniRef90	UniRef90_UPI000415264F	HK97 family phage prohead protease	NA
UHGV-2057335_28	eggNOG-mapper	1196031.ALEG01000039_gene1815	Phage prohead protease, HK97 family	NA
UHGV-2057335_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2057335_28	COG	COG3740	Phage head maturation protease	NA
UHGV-2057335_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2057335_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-2057335_29	UniRef90	UniRef90_UPI000400CBEC	phage major capsid protein	NA
UHGV-2057335_29	eggNOG-mapper	903814.ELI_1299	Phage capsid family	NA
UHGV-2057335_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2057335_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2057335_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2057335_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2057335_30	Structural annotation	PF01281	NA	NA
UHGV-2057335_31	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2057335_31	UniRef90	UniRef90_UPI00041E0DD1	head-tail connector protein	NA
UHGV-2057335_31	eggNOG-mapper	632245.CLP_2916	Phage gp6-like head-tail connector protein	NA
UHGV-2057335_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2057335_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2057335_32	PHROG	phrog_25	head closure Hc1	connector
UHGV-2057335_32	UniRef90	UniRef90_UPI000415E870	phage head closure protein	NA
UHGV-2057335_32	eggNOG-mapper	1285586.H131_21292	Phage head-tail joining protein	NA
UHGV-2057335_32	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2057335_32	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2057335_32	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2057335_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2057335_33	UniRef90	UniRef90_UPI000410849E	HK97 gp10 family phage protein	NA
UHGV-2057335_33	eggNOG-mapper	1095747.HMPREF1049_2007	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2057335_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2057335_33	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2057335_34	PHROG	phrog_525	NA	unknown function
UHGV-2057335_34	Pfam	PF20765	NA	DUF6838
UHGV-2057335_34	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-2057335_35	PHROG	phrog_1480	tail sheath	tail
UHGV-2057335_35	UniRef90	UniRef90_A0A7X2XHA8	Phage tail sheath protein	NA
UHGV-2057335_35	eggNOG-mapper	1095747.HMPREF1049_2005	Phage tail sheath C-terminal domain	NA
UHGV-2057335_35	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2057335_35	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2057335_36	PHROG	phrog_365	tail protein	tail
UHGV-2057335_36	UniRef90	UniRef90_UPI000429BBBA	phage tail tube protein	NA
UHGV-2057335_36	eggNOG-mapper	393480.FNP_1694	Phage tail tube protein	NA
UHGV-2057335_36	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2057335_36	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2057335_37	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-2057335_37	eggNOG-mapper	632245.CLP_2608	NA	NA
UHGV-2057335_37	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-2057335_39	PHROG	phrog_7972	NA	unknown function
UHGV-2057335_39	UniRef90	UniRef90_A0A8G0NSD2	Phage tail protein	NA
UHGV-2057335_39	eggNOG-mapper	469617.FUAG_00846	tape measure	NA
UHGV-2057335_39	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2057335_40	PHROG	phrog_5184	NA	unknown function
UHGV-2057335_40	UniRef90	UniRef90_A0A5C0SFK8	Phage portal protein	NA
UHGV-2057335_40	eggNOG-mapper	1285586.H131_21257	LysM domain	NA
UHGV-2057335_40	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2057335_41	PHROG	phrog_400	tail protein	tail
UHGV-2057335_41	UniRef90	UniRef90_UPI000F0469E9	CHAP domain-containing protein	NA
UHGV-2057335_41	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-2057335_41	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2057335_42	PHROG	phrog_579	NA	unknown function
UHGV-2057335_42	UniRef90	UniRef90_UPI00047CF220	NA	NA
UHGV-2057335_42	Pfam	PF10844	NA	DUF2577
UHGV-2057335_42	Structural annotation	PF10844	NA	NA
UHGV-2057335_43	UniRef90	UniRef90_UPI0004790B6C	NA	NA
UHGV-2057335_43	Pfam	PF10934	NA	DUF2634
UHGV-2057335_43	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-2057335_44	PHROG	phrog_6	baseplate protein	tail
UHGV-2057335_44	UniRef90	UniRef90_UPI000405AD8A	baseplate J/gp47 family protein	NA
UHGV-2057335_44	eggNOG-mapper	97138.C820_00599	Baseplate J-like protein	NA
UHGV-2057335_44	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2057335_44	COG	COG3299	NA	NA
UHGV-2057335_44	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2057335_45	PHROG	phrog_521	tail protein	tail
UHGV-2057335_45	UniRef90	UniRef90_UPI000478E68D	NA	NA
UHGV-2057335_45	eggNOG-mapper	632245.CLP_1289	NA	NA
UHGV-2057335_45	COG	COG3778	NA	NA
UHGV-2057335_45	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2057335_46	eggNOG-mapper	1273103.NM10_08099	NA	NA
UHGV-2057335_47	PHROG	phrog_32639	NA	unknown function
UHGV-2057335_50	eggNOG-mapper	568816.Acin_1951	NA	NA
UHGV-2057335_51	PHROG	phrog_5867	endolysin	lysis
UHGV-2057335_51	UniRef90	UniRef90_UPI001D06C26B	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2057335_51	eggNOG-mapper	500635.MITSMUL_03167	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2057335_51	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2057335_51	Structural annotation	MF_04111	NA	NA
UHGV-2057335_52	PHROG	phrog_18996	NA	unknown function
UHGV-2057335_52	eggNOG-mapper	1273103.NM10_01746	NA	NA