UHGV-2057562

Genome information

Genome length 33,686 bps

CDS count 54

Completeness 85.63% (medium-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-2057562
vOTU ID	vOTU-028123
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029375\|Ga0243934_1000299\|provirus_55016_88701
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.9
Jumbo phage	No

Genome content
Genome length	33,686 bps
GC content	42.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.97%
Average CDS length	576.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2057562_1	KOfam	K14059	int; integrase	NA
UHGV-2057562_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2057562_1	UniRef90	UniRef90_UPI00101EF3B7	tyrosine-type recombinase/integrase	NA
UHGV-2057562_1	eggNOG-mapper	1232453.BAIF02000010_gene3323	Phage integrase family	NA
UHGV-2057562_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2057562_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2057562_2	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-2057562_2	PHROG	phrog_15286	NA	unknown function
UHGV-2057562_2	UniRef90	UniRef90_A0A844E3D6	Bro-N domain-containing protein	NA
UHGV-2057562_2	eggNOG-mapper	411459.RUMOBE_00965	NA	NA
UHGV-2057562_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2057562_2	COG	COG3617	Prophage antirepressor	NA
UHGV-2057562_2	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-2057562_3	PHROG	phrog_7115	NA	unknown function
UHGV-2057562_3	UniRef90	UniRef90_A0A173UN76	PH domain-containing protein	NA
UHGV-2057562_3	eggNOG-mapper	476272.RUMHYD_02184	Bacterial PH domain	NA
UHGV-2057562_3	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-2057562_3	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-2057562_5	PHROG	phrog_87	metallo-protease	other
UHGV-2057562_5	UniRef90	UniRef90_A0A844E1N1	Peptidase_M78 domain-containing protein	NA
UHGV-2057562_5	eggNOG-mapper	742723.HMPREF9477_00938	Zn peptidase	NA
UHGV-2057562_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2057562_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2057562_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2057562_6	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2057562_6	UniRef90	UniRef90_A0A844E6G3	Helix-turn-helix domain-containing protein	NA
UHGV-2057562_6	eggNOG-mapper	742735.HMPREF9467_01804	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2057562_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2057562_6	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2057562_7	UniRef90	UniRef90_A0A416GY85	XRE family transcriptional regulator	NA
UHGV-2057562_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2057562_10	Structural annotation	PF10743, TIGR01764, COG4220	NA	NA
UHGV-2057562_12	Structural annotation	PF16311, NF002796	NA	NA
UHGV-2057562_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2057562_14	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-2057562_14	Structural annotation	PF01446	NA	NA
UHGV-2057562_15	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2057562_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2057562_15	UniRef90	UniRef90_A0A173UM21	Ribonuclease H	NA
UHGV-2057562_15	eggNOG-mapper	1235790.C805_03782	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2057562_15	Pfam	PF00075	RNase H	RNase_H
UHGV-2057562_15	COG	COG0328	Ribonuclease HI	NA
UHGV-2057562_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2057562_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2057562_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2057562_16	UniRef90	UniRef90_A0A173UNZ4	Single-stranded DNA-binding protein	NA
UHGV-2057562_16	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-2057562_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2057562_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2057562_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2057562_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2057562_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2057562_17	PHROG	phrog_7566	NA	unknown function
UHGV-2057562_17	eggNOG-mapper	1235800.C819_00511	NA	NA
UHGV-2057562_18	Structural annotation	PF05641	NA	NA
UHGV-2057562_19	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-2057562_20	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-2057562_21	PHROG	phrog_8470	NA	unknown function
UHGV-2057562_21	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-2057562_21	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-2057562_21	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2057562_21	Structural annotation	PF14284	NA	NA
UHGV-2057562_22	PHROG	phrog_15077	NA	unknown function
UHGV-2057562_22	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-2057562_22	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-2057562_22	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2057562_23	PHROG	phrog_33451	NA	unknown function
UHGV-2057562_23	UniRef90	UniRef90_UPI000CF85C21	NA	NA
UHGV-2057562_24	UniRef90	UniRef90_R5TJQ4	Carbamoyl-phosphate synthase L chain ATP-binding protein	NA
UHGV-2057562_25	PHROG	phrog_20593	NA	unknown function
UHGV-2057562_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2057562_27	UniRef90	UniRef90_A0A3D3U8Q6	Sigma70_r4 domain-containing protein	NA
UHGV-2057562_27	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-2057562_27	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2057562_28	PHROG	phrog_30856	NA	unknown function
UHGV-2057562_30	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-2057562_30	PHROG	phrog_11157	NA	unknown function
UHGV-2057562_30	UniRef90	UniRef90_A0A173UNA5	Bacillopeptidase F	NA
UHGV-2057562_30	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-2057562_30	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-2057562_30	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-2057562_30	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-2057562_30	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-2057562_31	PHROG	phrog_32322	NA	unknown function
UHGV-2057562_31	UniRef90	UniRef90_A0A173UQD8	Ig-like_bact domain-containing protein	NA
UHGV-2057562_31	eggNOG-mapper	1256908.HMPREF0373_00675	NA	NA
UHGV-2057562_31	Pfam	PF13754	NA	Big_3_4
UHGV-2057562_31	Structural annotation	PF13754	NA	NA
UHGV-2057562_32	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-2057562_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2057562_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2057562_33	UniRef90	UniRef90_U2PKP2	Terminase small subunit	NA
UHGV-2057562_33	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-2057562_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2057562_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2057562_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2057562_35	PHROG	phrog_1233	NA	unknown function
UHGV-2057562_35	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-2057562_35	Structural annotation	PF13058	NA	NA
UHGV-2057562_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2057562_36	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2057562_36	UniRef90	UniRef90_U2RK66	Phage terminase, large subunit, PBSX family	NA
UHGV-2057562_36	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-2057562_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2057562_36	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2057562_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2057562_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-2057562_36	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2057562_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-2057562_37	UniRef90	UniRef90_U2Q3Z0	Putative phage portal protein, SPP1 Gp6	NA
UHGV-2057562_37	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2057562_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2057562_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2057562_38	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2057562_38	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-2057562_38	COG	COG2369	NA	NA
UHGV-2057562_39	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2057562_39	UniRef90	UniRef90_U2PKN7	Phage protein F-like protein	NA
UHGV-2057562_39	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-2057562_39	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2057562_39	COG	COG2369	NA	NA
UHGV-2057562_41	UniRef90	UniRef90_UPI0013142281	retroviral-like aspartic protease family protein	NA
UHGV-2057562_41	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-2057562_41	Structural annotation	PF13650, TIGR02281, COG5550	NA	NA
UHGV-2057562_42	PHROG	phrog_918	NA	unknown function
UHGV-2057562_42	UniRef90	UniRef90_UPI001D092FF5	NA	NA
UHGV-2057562_42	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-2057562_42	Pfam	PF19791	NA	DUF6275
UHGV-2057562_42	Structural annotation	PF19791	NA	NA
UHGV-2057562_43	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2057562_43	UniRef90	UniRef90_A0A415UCX1	NA	NA
UHGV-2057562_43	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-2057562_43	Structural annotation	PF14359	NA	NA
UHGV-2057562_44	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2057562_44	UniRef90	UniRef90_UPI001898447E	phage scaffolding protein	NA
UHGV-2057562_44	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-2057562_44	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2057562_44	Structural annotation	PF06810	NA	NA
UHGV-2057562_45	PHROG	phrog_544	major head protein	head and packaging
UHGV-2057562_45	UniRef90	UniRef90_A0A0D0SBF1	Phage major capsid protein	NA
UHGV-2057562_45	eggNOG-mapper	1256908.HMPREF0373_00476	NA	NA
UHGV-2057562_45	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2057562_45	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2057562_46	PHROG	phrog_1236	head protein	head and packaging
UHGV-2057562_46	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-2057562_46	Structural annotation	PF05135	NA	NA
UHGV-2057562_47	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-2057562_47	UniRef90	UniRef90_A0A416AFR5	Head-tail adaptor protein	NA
UHGV-2057562_47	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-2057562_47	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2057562_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2057562_48	UniRef90	UniRef90_UPI00189F42E9	HK97 gp10 family phage protein	NA
UHGV-2057562_48	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-2057562_48	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2057562_48	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2057562_49	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-2057562_49	Structural annotation	PF12691	NA	NA
UHGV-2057562_50	PHROG	phrog_885	major tail protein	tail
UHGV-2057562_50	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-2057562_50	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2057562_51	PHROG	phrog_1021	NA	unknown function
UHGV-2057562_51	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-2057562_52	UniRef90	UniRef90_A0A0D0RHE1	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-2057562_53	KOfam	K20254	PLIN4; perilipin-4	NA
UHGV-2057562_53	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2057562_53	UniRef90	UniRef90_U2Q4W9	Phage tail tape measure protein, TP901 family	NA
UHGV-2057562_53	eggNOG-mapper	1256908.HMPREF0373_00468	Phage tail tape measure protein, TP901 family	NA
UHGV-2057562_53	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2057562_53	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-2057562_53	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2057562_53	COG	COG5283	Phage-related tail protein	NA
UHGV-2057562_53	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2057562_54	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2057562_54	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-2057562_54	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-2057562_54	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA