UHGV-2057565

Genome information

Genome length 40,044 bps

CDS count 55

Completeness 74.96% (medium-quality)

geNomad score 0.9624

Prediction confidence Confident

Genome information
Genome ID	UHGV-2057565
vOTU ID	vOTU-015210
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029375\|Ga0243934_1000057\|provirus_53660_93703
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9624
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.86
Jumbo phage	No

Genome content
Genome length	40,044 bps
GC content	49.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	86.21%
Average CDS length	632.07 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2057565_2	KOfam	K17069	MET17; O-acetylhomoserine/O-acetylserine sulfhydrylase [EC:2.5.1.49 2.5.1.47]	NA
UHGV-2057565_2	UniRef90	UniRef90_B0MW13	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA
UHGV-2057565_2	eggNOG-mapper	445970.ALIPUT_01243	Cys/Met metabolism PLP-dependent enzyme	NA
UHGV-2057565_2	Pfam	PF01053	Cys/Met metabolism PLP-dependent enzyme	Cys_Met_Meta_PP
UHGV-2057565_2	NCBIFam	TIGR01326.1	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA
UHGV-2057565_2	COG	COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	NA
UHGV-2057565_2	Structural annotation	PF01053, MF_02056, NF006096, COG0626	NA	NA
UHGV-2057565_3	PHROG	phrog_1008	DNA methyltransferase	other
UHGV-2057565_3	eggNOG-mapper	742725.HMPREF9450_02085	NA	NA
UHGV-2057565_5	PHROG	phrog_8684	NA	unknown function
UHGV-2057565_5	UniRef90	UniRef90_B0MWV9	YopX domain-containing protein	NA
UHGV-2057565_5	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-2057565_5	Pfam	PF09643	YopX protein	YopX
UHGV-2057565_5	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2057565_5	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2057565_7	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-2057565_9	PHROG	phrog_35741	NA	unknown function
UHGV-2057565_9	eggNOG-mapper	445970.ALIPUT_01623	NA	NA
UHGV-2057565_11	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-2057565_12	PHROG	phrog_38431	NA	unknown function
UHGV-2057565_12	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-2057565_12	eggNOG-mapper	445970.ALIPUT_01628	NA	NA
UHGV-2057565_14	eggNOG-mapper	742725.HMPREF9450_02107	NA	NA
UHGV-2057565_14	Structural annotation	PF10781	NA	NA
UHGV-2057565_15	PHROG	phrog_31654	NA	unknown function
UHGV-2057565_15	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-2057565_16	PHROG	phrog_16490	NA	unknown function
UHGV-2057565_16	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-2057565_16	eggNOG-mapper	445970.ALIPUT_01632	NA	NA
UHGV-2057565_17	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-2057565_17	eggNOG-mapper	445970.ALIPUT_01633	Bacterial dnaA protein helix-turn-helix	NA
UHGV-2057565_17	Structural annotation	PF08299, NF004688	NA	NA
UHGV-2057565_18	eggNOG-mapper	411477.PARMER_00348	NA	NA
UHGV-2057565_19	Pfam	PF20647	NA	DUF6808
UHGV-2057565_19	Structural annotation	PF20647	NA	NA
UHGV-2057565_20	PHROG	phrog_873	endolysin	head and packaging
UHGV-2057565_20	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-2057565_20	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-2057565_21	UniRef90	UniRef90_B0MX98	Toxin secretion/phage lysis holin	NA
UHGV-2057565_21	eggNOG-mapper	445970.ALIPUT_01637	Bacteriophage holin family	NA
UHGV-2057565_21	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2057565_21	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2057565_22	PHROG	phrog_17422	NA	unknown function
UHGV-2057565_22	eggNOG-mapper	445970.ALIPUT_01638	cellulase activity	NA
UHGV-2057565_22	COG	COG4926	Phage-related protein	NA
UHGV-2057565_22	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2057565_23	PHROG	phrog_11623	NA	unknown function
UHGV-2057565_23	UniRef90	UniRef90_B0MUL9	NA	NA
UHGV-2057565_23	eggNOG-mapper	445970.ALIPUT_00693	NA	NA
UHGV-2057565_23	Pfam	PF12873	NA	DUF3825
UHGV-2057565_23	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-2057565_23	Structural annotation	PF12873	NA	NA
UHGV-2057565_24	PHROG	phrog_6305	tail protein	tail
UHGV-2057565_24	eggNOG-mapper	445970.ALIPUT_00695	NA	NA
UHGV-2057565_24	Structural annotation	PF11514, TIGR01633, COG4722	NA	NA
UHGV-2057565_25	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-2057565_25	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-2057565_25	UniRef90	UniRef90_B0MUJ0	TMP_3 domain-containing protein	NA
UHGV-2057565_25	eggNOG-mapper	445970.ALIPUT_00696	NA	NA
UHGV-2057565_25	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2057565_25	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2057565_25	Structural annotation	PF20155, PF16535, TIGR01760, COG3941	NA	NA
UHGV-2057565_26	PHROG	phrog_10156	NA	unknown function
UHGV-2057565_26	eggNOG-mapper	445970.ALIPUT_00697	NA	NA
UHGV-2057565_27	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2057565_27	PHROG	phrog_1	integrase	integration and excision
UHGV-2057565_27	UniRef90	UniRef90_A0A143XMI6	Site-specific tyrosine recombinase XerC	NA
UHGV-2057565_27	eggNOG-mapper	445970.ALIPUT_01190	Arm DNA-binding domain	NA
UHGV-2057565_27	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-2057565_27	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2057565_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2057565_27	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2057565_27	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2057565_28	PHROG	phrog_4792	anti-repressor	transcription regulation
UHGV-2057565_28	UniRef90	UniRef90_UPI00189B3756	ORF6N domain-containing protein	NA
UHGV-2057565_28	eggNOG-mapper	445970.ALIPUT_01207	PFAM ORF6N domain	NA
UHGV-2057565_28	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2057565_28	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2057565_28	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-2057565_29	UniRef90	UniRef90_UPI000E554D88	helix-turn-helix domain-containing protein	NA
UHGV-2057565_29	eggNOG-mapper	445970.ALIPUT_01205	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2057565_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2057565_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2057565_29	Structural annotation	PF01381, TIGR02684, COG1396	NA	NA
UHGV-2057565_31	PHROG	phrog_1086	NA	unknown function
UHGV-2057565_31	UniRef90	UniRef90_UPI001D0859DC	SH3 beta-barrel fold-containing protein	NA
UHGV-2057565_31	eggNOG-mapper	411477.PARMER_02092	NA	NA
UHGV-2057565_31	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-2057565_31	Structural annotation	PF10902	NA	NA
UHGV-2057565_38	UniRef90	UniRef90_A0A143XL61	Helix-turn-helix domain protein	NA
UHGV-2057565_38	eggNOG-mapper	880526.KE386488_gene1381	Helix-turn-helix domain	NA
UHGV-2057565_38	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2057565_38	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2057565_39	Structural annotation	PF14090, MF_01909, NF038251, COG5625	NA	NA
UHGV-2057565_40	PHROG	phrog_15768	NA	unknown function
UHGV-2057565_40	UniRef90	UniRef90_UPI001D094C13	NA	NA
UHGV-2057565_40	eggNOG-mapper	525373.HMPREF0766_10096	NA	NA
UHGV-2057565_40	Pfam	PF19808	NA	DUF6291
UHGV-2057565_40	Structural annotation	PF19808	NA	NA
UHGV-2057565_41	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2057565_41	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2057565_41	UniRef90	UniRef90_A0A174HEH1	DNA helicase	NA
UHGV-2057565_41	eggNOG-mapper	1203611.KB894553_gene2367	Participates in initiation and elongation during chromosome replication	NA
UHGV-2057565_41	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2057565_41	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2057565_41	COG	COG0305	Replicative DNA helicase	NA
UHGV-2057565_41	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2057565_43	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2057565_43	UniRef90	UniRef90_A0A088C3S3	Terminase small subunit	NA
UHGV-2057565_43	eggNOG-mapper	445970.ALIPUT_01194	NA	NA
UHGV-2057565_43	Structural annotation	PF07141	NA	NA
UHGV-2057565_47	PHROG	phrog_6767	NA	unknown function
UHGV-2057565_47	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2057565_48	PHROG	phrog_5597	NA	unknown function
UHGV-2057565_48	Structural annotation	PF05657	NA	NA
UHGV-2057565_49	PHROG	phrog_5377	NA	unknown function
UHGV-2057565_49	UniRef90	UniRef90_UPI0008DA4DD0	HK97 gp10 family phage protein	NA
UHGV-2057565_49	eggNOG-mapper	445970.ALIPUT_00701	NA	NA
UHGV-2057565_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2057565_50	PHROG	phrog_13251	NA	unknown function
UHGV-2057565_50	Structural annotation	PF20536	NA	NA
UHGV-2057565_51	PHROG	phrog_16646	NA	unknown function
UHGV-2057565_51	eggNOG-mapper	411477.PARMER_01697	NA	NA
UHGV-2057565_51	Pfam	PF20449	NA	DUF6706
UHGV-2057565_51	Structural annotation	PF20449	NA	NA
UHGV-2057565_52	PHROG	phrog_29	major head protein	head and packaging
UHGV-2057565_52	UniRef90	UniRef90_A0A316NWE1	Major capsid protein E	NA
UHGV-2057565_52	eggNOG-mapper	445970.ALIPUT_00704	NA	NA
UHGV-2057565_52	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2057565_52	Structural annotation	PF03864, MF_04133, NF041162, COG4834	NA	NA
UHGV-2057565_53	eggNOG-mapper	888059.HMPREF9071_2141	Head fiber protein	NA
UHGV-2057565_53	Structural annotation	PF21430, NF009633	NA	NA
UHGV-2057565_54	PHROG	phrog_5824	NA	unknown function
UHGV-2057565_54	eggNOG-mapper	445970.ALIPUT_00706	NA	NA
UHGV-2057565_55	UniRef90	UniRef90_B0MUK2	SagB-type dehydrogenase domain protein	NA
UHGV-2057565_55	eggNOG-mapper	445970.ALIPUT_00708	Nitroreductase family	NA
UHGV-2057565_55	Pfam	PF00881	Nitroreductase family	Nitroreductase
UHGV-2057565_55	COG	COG0778	Nitroreductase	NA