UHGV-2057569

Genome information

Genome length 23,337 bps

CDS count 40

Completeness 66.00% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-2057569
vOTU ID	vOTU-041662
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029375\|Ga0243934_1000189\|provirus_84239_107575
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.73
Jumbo phage	No

Genome content
Genome length	23,337 bps
GC content	41.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	86.74%
Average CDS length	508.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2057569_1	UniRef90	UniRef90_B0G398	NMT1 domain-containing protein	NA
UHGV-2057569_1	eggNOG-mapper	411461.DORFOR_00719	thiamine-containing compound biosynthetic process	NA
UHGV-2057569_1	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-2057569_1	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA
UHGV-2057569_2	PHROG	phrog_14030	NA	unknown function
UHGV-2057569_2	UniRef90	UniRef90_G5FC83	SH3b domain-containing protein	NA
UHGV-2057569_2	eggNOG-mapper	411461.DORFOR_00720	NA	NA
UHGV-2057569_2	Structural annotation	PF18342, NF041850, COG4991	NA	NA
UHGV-2057569_3	PHROG	phrog_1129	holin	lysis
UHGV-2057569_3	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-2057569_3	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2057569_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2057569_3	Structural annotation	PF06946	NA	NA
UHGV-2057569_4	PHROG	phrog_1009	NA	unknown function
UHGV-2057569_4	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-2057569_4	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-2057569_5	eggNOG-mapper	411461.DORFOR_00723	NA	NA
UHGV-2057569_6	eggNOG-mapper	742765.HMPREF9457_03366	NA	NA
UHGV-2057569_6	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-2057569_7	PHROG	phrog_32322	NA	unknown function
UHGV-2057569_7	UniRef90	UniRef90_B0G3A4	Ig-like_bact domain-containing protein	NA
UHGV-2057569_7	eggNOG-mapper	411461.DORFOR_00725	NA	NA
UHGV-2057569_7	Pfam	PF13754	NA	Big_3_4
UHGV-2057569_7	Structural annotation	PF13754	NA	NA
UHGV-2057569_8	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-2057569_8	PHROG	phrog_11157	NA	unknown function
UHGV-2057569_8	UniRef90	UniRef90_B0G3A5	Big_13 domain-containing protein	NA
UHGV-2057569_8	eggNOG-mapper	411461.DORFOR_00726	NA	NA
UHGV-2057569_8	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-2057569_8	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-2057569_8	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-2057569_8	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-2057569_8	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-2057569_9	eggNOG-mapper	411461.DORFOR_01181	NA	NA
UHGV-2057569_10	PHROG	phrog_12931	NA	unknown function
UHGV-2057569_10	eggNOG-mapper	411461.DORFOR_01180	NA	NA
UHGV-2057569_11	eggNOG-mapper	411461.DORFOR_00732	NA	NA
UHGV-2057569_12	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-2057569_12	PHROG	phrog_1	integrase	integration and excision
UHGV-2057569_12	UniRef90	UniRef90_A0A1C5SV17	Tyrosine recombinase XerD	NA
UHGV-2057569_12	eggNOG-mapper	411461.DORFOR_00731	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2057569_12	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2057569_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2057569_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2057569_12	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2057569_14	PHROG	phrog_25635	NA	unknown function
UHGV-2057569_14	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-2057569_14	Structural annotation	PF20747	NA	NA
UHGV-2057569_15	PHROG	phrog_538	minor tail protein	tail
UHGV-2057569_15	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2057569_15	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-2057569_15	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2057569_15	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2057569_16	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2057569_16	UniRef90	UniRef90_A0A174L0T5	Phage-related protein	NA
UHGV-2057569_16	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-2057569_16	COG	COG1511	NA	NA
UHGV-2057569_16	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-2057569_17	PHROG	phrog_1633	NA	unknown function
UHGV-2057569_17	UniRef90	UniRef90_UPI00157064A0	NA	NA
UHGV-2057569_17	eggNOG-mapper	1280698.AUJS01000007_gene1046	NA	NA
UHGV-2057569_17	Pfam	PF17318	NA	DUF5361
UHGV-2057569_17	Structural annotation	PF17318	NA	NA
UHGV-2057569_18	PHROG	phrog_1526	NA	unknown function
UHGV-2057569_18	UniRef90	UniRef90_A0A1Q8EF45	NA	NA
UHGV-2057569_18	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-2057569_19	PHROG	phrog_117	major tail protein	tail
UHGV-2057569_19	UniRef90	UniRef90_A0A396L6W3	Phage tail protein	NA
UHGV-2057569_19	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-2057569_19	COG	COG5492	NA	NA
UHGV-2057569_19	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2057569_20	PHROG	phrog_123	tail terminator	connector
UHGV-2057569_20	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-2057569_20	Structural annotation	PF06141	NA	NA
UHGV-2057569_21	PHROG	phrog_387	neck protein	connector
UHGV-2057569_21	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-2057569_22	PHROG	phrog_501	head closure Hc1	connector
UHGV-2057569_22	eggNOG-mapper	1280698.AUJS01000007_gene1041	NA	NA
UHGV-2057569_22	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2057569_23	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2057569_23	UniRef90	UniRef90_A0A1C5Y9F2	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2057569_23	eggNOG-mapper	1280698.AUJS01000007_gene1040	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2057569_23	Pfam	PF09355	NA	Phage_Gp19
UHGV-2057569_23	Structural annotation	PF09355	NA	NA
UHGV-2057569_24	PHROG	phrog_36603	NA	unknown function
UHGV-2057569_25	PHROG	phrog_32396	NA	unknown function
UHGV-2057569_25	UniRef90	UniRef90_UPI001961D35B	phage major capsid protein	NA
UHGV-2057569_25	eggNOG-mapper	1280698.AUJS01000007_gene1038	Phage capsid family	NA
UHGV-2057569_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2057569_26	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-2057569_26	UniRef90	UniRef90_A0A0X8USY7	Phage scaffold protein	NA
UHGV-2057569_26	eggNOG-mapper	1280698.AUJS01000007_gene1037	NA	NA
UHGV-2057569_26	Pfam	PF14265	NA	DUF4355
UHGV-2057569_26	Structural annotation	PF14265	NA	NA
UHGV-2057569_27	PHROG	phrog_17688	NA	unknown function
UHGV-2057569_27	UniRef90	UniRef90_R6SFU1	Putative phage terminase large subunit	NA
UHGV-2057569_27	eggNOG-mapper	1280698.AUJS01000007_gene1036	phage terminase, large subunit	NA
UHGV-2057569_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2057569_27	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2057569_28	PHROG	phrog_1865	NA	unknown function
UHGV-2057569_28	Structural annotation	PF07073, MF_00436, NF008636, COG4568	NA	NA
UHGV-2057569_29	PHROG	phrog_37230	NA	unknown function
UHGV-2057569_30	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-2057569_30	UniRef90	UniRef90_UPI00156EC2C0	polymorphic toxin type 50 domain-containing protein	NA
UHGV-2057569_30	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-2057569_30	COG	COG2369	NA	NA
UHGV-2057569_31	PHROG	phrog_104	portal protein	head and packaging
UHGV-2057569_31	UniRef90	UniRef90_UPI001A9C29A4	phage portal protein	NA
UHGV-2057569_31	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2057569_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2057569_32	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2057569_32	UniRef90	UniRef90_R6S8U5	HNH endonuclease	NA
UHGV-2057569_32	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-2057569_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2057569_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2057569_32	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2057569_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2057569_33	UniRef90	UniRef90_R6S8T9	Sigma70_r4 domain-containing protein	NA
UHGV-2057569_33	eggNOG-mapper	1280698.AUJS01000007_gene1031	NA	NA
UHGV-2057569_33	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2057569_33	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-2057569_34	PHROG	phrog_7024	NA	unknown function
UHGV-2057569_34	eggNOG-mapper	1286171.EAL2_c05730	NA	NA
UHGV-2057569_35	PHROG	phrog_38110	NA	unknown function
UHGV-2057569_36	PHROG	phrog_31991	NA	unknown function
UHGV-2057569_38	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-2057569_38	UniRef90	UniRef90_W1I6Y1	Uncultured bacterium extrachromosomal DNA RGI01389	NA
UHGV-2057569_38	eggNOG-mapper	411461.DORFOR_01154	COG NOG12663 non supervised orthologous group	NA
UHGV-2057569_38	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-2057569_40	KOfam	K07486	K07486; transposase	NA
UHGV-2057569_40	PHROG	phrog_2199	transposase	integration and excision
UHGV-2057569_40	UniRef90	UniRef90_A0A3A9GWE8	IS110 family transposase (Fragment)	NA
UHGV-2057569_40	eggNOG-mapper	742765.HMPREF9457_03802	Transposase IS116/IS110/IS902 family	NA
UHGV-2057569_40	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-2057569_40	COG	COG3547	Transposase	NA