UHGV-2058057

Genome information

Genome length 36,168 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9684

Prediction confidence Confident

Genome information
Genome ID	UHGV-2058057
vOTU ID	vOTU-014432
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029415\|Ga0243378_1000193\|provirus_29671_65838
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9684
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.07
Jumbo phage	No

Genome content
Genome length	36,168 bps
GC content	40.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.34%
Average CDS length	664.74 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2058057_1	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-2058057_1	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-2058057_1	UniRef90	UniRef90_UPI0015F455B4	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2058057_1	eggNOG-mapper	411474.COPEUT_02341	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	NA
UHGV-2058057_1	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-2058057_1	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-2058057_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2058057_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2058057_1	Structural annotation	PF07638, MF_00245, TIGR02954, COG1595	NA	NA
UHGV-2058057_2	KOfam	K14059	int; integrase	NA
UHGV-2058057_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2058057_2	UniRef90	UniRef90_A0A373XME4	Site-specific integrase	NA
UHGV-2058057_2	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-2058057_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2058057_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2058057_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2058057_3	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-2058057_4	PHROG	phrog_1914	NA	unknown function
UHGV-2058057_4	UniRef90	UniRef90_A0A2N0ULV1	Peptidase_M78 domain-containing protein	NA
UHGV-2058057_4	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2058057_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2058057_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2058057_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2058057_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2058057_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2058057_5	UniRef90	UniRef90_A0A2N0ULR3	HTH-type transcriptional regulator ImmR	NA
UHGV-2058057_5	eggNOG-mapper	649747.HMPREF0083_01078	Transcriptional regulator	NA
UHGV-2058057_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2058057_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2058057_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2058057_6	UniRef90	UniRef90_A0A2N0ULV0	Helix-turn-helix domain protein	NA
UHGV-2058057_6	eggNOG-mapper	445335.CBN_3090	Helix-turn-helix domain	NA
UHGV-2058057_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2058057_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2058057_9	PHROG	phrog_3882	NA	unknown function
UHGV-2058057_10	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2058057_10	UniRef90	UniRef90_A0A413K8G3	NA	NA
UHGV-2058057_10	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-2058057_10	Structural annotation	COG2250	NA	NA
UHGV-2058057_11	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-2058057_11	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2058057_11	UniRef90	UniRef90_A0A374N3U7	XRE family transcriptional regulator	NA
UHGV-2058057_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2058057_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2058057_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2058057_12	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-2058057_12	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-2058057_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2058057_12	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2058057_12	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2058057_12	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-2058057_15	Structural annotation	PF04570, COG2075	NA	NA
UHGV-2058057_16	PHROG	phrog_674	NA	unknown function
UHGV-2058057_16	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-2058057_16	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-2058057_16	Pfam	PF07083	NA	DUF1351
UHGV-2058057_16	Structural annotation	PF07083	NA	NA
UHGV-2058057_17	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2058057_17	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2058057_17	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-2058057_17	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-2058057_17	Pfam	PF03837	RecT family	RecT
UHGV-2058057_17	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2058057_17	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2058057_17	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2058057_18	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2058057_18	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2058057_18	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-2058057_18	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-2058057_18	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2058057_18	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2058057_18	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-2058057_19	PHROG	phrog_398	NA	unknown function
UHGV-2058057_19	UniRef90	UniRef90_UPI001E5E0390	putative HNHc nuclease	NA
UHGV-2058057_19	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-2058057_19	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-2058057_19	Structural annotation	PF16784	NA	NA
UHGV-2058057_20	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2058057_20	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-2058057_20	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-2058057_20	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2058057_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2058057_20	Structural annotation	PF14297	NA	NA
UHGV-2058057_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2058057_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2058057_21	UniRef90	UniRef90_A0A374MYR7	IstB_IS21 domain-containing protein	NA
UHGV-2058057_21	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-2058057_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2058057_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2058057_21	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-2058057_22	PHROG	phrog_824	NA	unknown function
UHGV-2058057_22	UniRef90	UniRef90_A0A374MXE9	VRR-NUC domain-containing protein	NA
UHGV-2058057_22	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-2058057_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2058057_22	Structural annotation	PF08774	NA	NA
UHGV-2058057_24	Structural annotation	PF05129	NA	NA
UHGV-2058057_26	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2058057_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2058057_26	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-2058057_26	eggNOG-mapper	717605.Theco_0106	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2058057_26	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2058057_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2058057_26	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2058057_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2058057_27	UniRef90	UniRef90_A0A374MXG7	XRE family transcriptional regulator	NA
UHGV-2058057_27	eggNOG-mapper	1288298.rosmuc_04238	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2058057_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2058057_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2058057_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2058057_28	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-2058057_28	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-2058057_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2058057_29	PHROG	phrog_1066	NA	unknown function
UHGV-2058057_29	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-2058057_29	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-2058057_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2058057_30	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-2058057_30	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-2058057_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2058057_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2058057_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2058057_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2058057_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-2058057_31	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-2058057_31	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-2058057_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2058057_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2058057_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2058057_32	PHROG	phrog_21498	NA	unknown function
UHGV-2058057_32	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-2058057_32	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-2058057_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2058057_32	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-2058057_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2058057_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2058057_33	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2058057_33	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-2058057_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2058057_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2058057_33	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-2058057_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-2058057_34	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-2058057_34	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-2058057_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2058057_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2058057_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2058057_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2058057_35	PHROG	phrog_5223	neck protein	connector
UHGV-2058057_35	UniRef90	UniRef90_H6LCB7	Putative prophage LambdaBa04 DNA packaging protein	NA
UHGV-2058057_35	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-2058057_35	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2058057_35	Structural annotation	TIGR01560	NA	NA
UHGV-2058057_36	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2058057_36	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-2058057_36	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-2058057_36	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2058057_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2058057_37	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-2058057_37	eggNOG-mapper	642492.Clole_0747	NA	NA
UHGV-2058057_37	Structural annotation	TIGR01725	NA	NA
UHGV-2058057_38	Structural annotation	PF12691	NA	NA
UHGV-2058057_39	PHROG	phrog_885	major tail protein	tail
UHGV-2058057_39	UniRef90	UniRef90_Q894J4	Conserved protein	NA
UHGV-2058057_39	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-2058057_39	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2058057_40	PHROG	phrog_1021	NA	unknown function
UHGV-2058057_42	PHROG	phrog_23464	NA	unknown function
UHGV-2058057_42	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-2058057_42	COG	COG5283	Phage-related tail protein	NA
UHGV-2058057_42	Structural annotation	COG3941	NA	NA
UHGV-2058057_43	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-2058057_43	eggNOG-mapper	1231377.C426_2222	phage tail	NA
UHGV-2058057_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-2058057_43	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2058057_44	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2058057_44	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-2058057_44	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2058057_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2058057_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2058057_44	COG	COG4926	Phage-related protein	NA
UHGV-2058057_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2058057_45	UniRef90	UniRef90_A0A373XLZ6	NA	NA
UHGV-2058057_45	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2058057_45	Structural annotation	PF10651, PF15432, PF08931, TIGR03711	NA	NA
UHGV-2058057_47	PHROG	phrog_199	holin	lysis
UHGV-2058057_47	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-2058057_47	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2058057_47	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2058057_47	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2058057_47	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2058057_47	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2058057_48	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2058057_48	PHROG	phrog_1794	amidase	lysis
UHGV-2058057_48	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-2058057_48	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2058057_48	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2058057_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2058057_48	Structural annotation	PF01520, PF18342, NF038140, COG0860, COG4991	NA	NA
UHGV-2058057_49	KOfam	K07271	licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]	NA
UHGV-2058057_49	UniRef90	UniRef90_A0A3D3D7N5	Epimerase domain-containing protein	NA
UHGV-2058057_49	eggNOG-mapper	697329.Rumal_2992	LicD family	NA
UHGV-2058057_49	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-2058057_49	Pfam	PF04991	LicD family	LicD
UHGV-2058057_49	COG	COG3475	Phosphorylcholine metabolism protein LicD	NA
UHGV-2058057_50	KOfam	K08678	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]	NA
UHGV-2058057_50	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-2058057_50	UniRef90	UniRef90_A0A2N0UQV5	dTDP-glucose 4,6-dehydratase	NA
UHGV-2058057_50	eggNOG-mapper	877411.JMMA01000002_gene2599	epimerase dehydratase	NA
UHGV-2058057_50	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-2058057_50	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-2058057_50	Structural annotation	PF16363, MF_01166, TIGR01181, COG0451	NA	NA