UHGV-2058222

Genome information

Genome length 42,492 bps

CDS count 57

Completeness 96.99% (high-quality)

geNomad score 0.9537

Prediction confidence Confident

Genome information
Genome ID	UHGV-2058222
vOTU ID	vOTU-009202
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029412\|Ga0243915_100270\|provirus_21037_69837
BioSample	SAMN05971627
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.99% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9537
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.26
Jumbo phage	No

Genome content
Genome length	42,492 bps
GC content	59.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.52%
Average CDS length	699.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2058222_1	UniRef90	UniRef90_UPI0003F8A9E3	helix-turn-helix domain-containing protein	NA
UHGV-2058222_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2058222_1	Structural annotation	PF12844, NF007257, COG3655	NA	NA
UHGV-2058222_3	UniRef90	UniRef90_UPI00096ABBAA	helix-turn-helix domain-containing protein	NA
UHGV-2058222_3	eggNOG-mapper	445975.COLSTE_01133	NA	NA
UHGV-2058222_3	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2058222_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2058222_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2058222_5	UniRef90	UniRef90_UPI0019561AD5	phage antirepressor KilAC domain-containing protein	NA
UHGV-2058222_5	eggNOG-mapper	702459.BBPR_0883	BRO family, N-terminal domain	NA
UHGV-2058222_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2058222_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2058222_5	COG	COG3617	Prophage antirepressor	NA
UHGV-2058222_5	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-2058222_6	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2058222_6	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2058222_6	UniRef90	UniRef90_UPI000405D233	DEAD/DEAH box helicase	NA
UHGV-2058222_6	eggNOG-mapper	1121866.AUGK01000003_gene1402	helicase	NA
UHGV-2058222_6	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2058222_6	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2058222_6	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2058222_6	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2058222_6	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-2058222_7	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2058222_7	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-2058222_7	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-2058222_8	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2058222_8	UniRef90	UniRef90_G9B1F6	Gp55	NA
UHGV-2058222_8	eggNOG-mapper	764595.G9B1F6_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-2058222_9	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2058222_9	UniRef90	UniRef90_A0A415UWN4	DNA polymerase elongation subunit (Family B)	NA
UHGV-2058222_9	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-2058222_9	Pfam	PF04404	ERF superfamily	ERF
UHGV-2058222_9	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-2058222_9	Structural annotation	PF04404, PF08490, MF_04010, NF004416	NA	NA
UHGV-2058222_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2058222_11	UniRef90	UniRef90_UPI0013EB18C0	YqaJ viral recombinase family protein	NA
UHGV-2058222_11	eggNOG-mapper	1121866.AUGK01000003_gene1405	YqaJ viral recombinase family	NA
UHGV-2058222_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2058222_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2058222_11	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-2058222_12	Structural annotation	PF05037, NF005674	NA	NA
UHGV-2058222_13	UniRef90	UniRef90_A0A415UW93	VRR-NUC domain-containing protein	NA
UHGV-2058222_13	eggNOG-mapper	1537917.JU82_09230	VRR_NUC	NA
UHGV-2058222_13	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2058222_13	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-2058222_15	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2058222_15	UniRef90	UniRef90_UPI0004853C8F	primase C-terminal domain-containing protein	NA
UHGV-2058222_15	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-2058222_15	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-2058222_15	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-2058222_15	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-2058222_17	UniRef90	UniRef90_A0A412HTW9	NA	NA
UHGV-2058222_17	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-2058222_17	Pfam	PF11753	NA	DUF3310
UHGV-2058222_19	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-2058222_19	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-2058222_19	UniRef90	UniRef90_A0A415UW88	Flavin-dependent thymidylate synthase	NA
UHGV-2058222_19	eggNOG-mapper	309798.COPRO5265_0833	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-2058222_19	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-2058222_19	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-2058222_19	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-2058222_19	HAMAP	MF_01408	Flavin-dependent thymidylate synthase [thyX]	NA
UHGV-2058222_19	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-2058222_22	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2058222_22	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2058222_22	UniRef90	UniRef90_A0A3N0I8V0	dUTP diphosphatase	NA
UHGV-2058222_22	eggNOG-mapper	665956.HMPREF1032_01869	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-2058222_22	Pfam	PF00692	dUTPase	dUTPase
UHGV-2058222_22	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-2058222_22	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2058222_22	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-2058222_24	PHROG	phrog_5931	NA	unknown function
UHGV-2058222_24	UniRef90	UniRef90_A0A5J6T6M6	Helix-turn-helix DNA binding domain protein	NA
UHGV-2058222_24	eggNOG-mapper	1223544.GSI01S_10_02020	NA	NA
UHGV-2058222_27	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2058222_27	UniRef90	UniRef90_UPI001BB2BAFF	NA	NA
UHGV-2058222_27	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-2058222_27	Pfam	PF14359	NA	DUF4406
UHGV-2058222_27	Structural annotation	PF14359, COG3613	NA	NA
UHGV-2058222_29	Structural annotation	PF09465, PF08207, MF_00646, TIGR03318	NA	NA
UHGV-2058222_30	PHROG	phrog_3392	NA	unknown function
UHGV-2058222_30	eggNOG-mapper	1308863.U5J9Q1_9CAUD	NA	NA
UHGV-2058222_32	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2058222_32	UniRef90	UniRef90_A0A3C1CZV1	SF3 helicase domain-containing protein	NA
UHGV-2058222_32	eggNOG-mapper	1121866.AUGK01000003_gene1422	Phage plasmid primase, P4 family	NA
UHGV-2058222_32	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2058222_32	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2058222_32	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2058222_34	UniRef90	UniRef90_A0A6M3LLE3	Putative glutamine amidotransferase	NA
UHGV-2058222_34	eggNOG-mapper	1401067.HMPREF0872_03875	NA	NA
UHGV-2058222_35	PHROG	phrog_16683	NA	unknown function
UHGV-2058222_35	UniRef90	UniRef90_A0A6M3JL09	Putative amidoligase enzyme	NA
UHGV-2058222_35	eggNOG-mapper	411473.RUMCAL_00666	NA	NA
UHGV-2058222_35	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-2058222_35	Structural annotation	PF12224, MF_01609, NF010042, COG2170	NA	NA
UHGV-2058222_36	UniRef90	UniRef90_A0A2S0KMP9	XRE family transcriptional regulator	NA
UHGV-2058222_36	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-2058222_38	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-2058222_38	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-2058222_38	UniRef90	UniRef90_UPI0013ECA541	recombinase family protein	NA
UHGV-2058222_38	eggNOG-mapper	1121866.AUGK01000003_gene1426	Resolvase, N terminal domain	NA
UHGV-2058222_38	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2058222_38	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2058222_38	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-2058222_39	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2058222_39	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-2058222_39	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-2058222_39	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-2058222_39	COG	COG5410	NA	NA
UHGV-2058222_39	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2058222_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-2058222_40	UniRef90	UniRef90_UPI000427669E	phage portal protein	NA
UHGV-2058222_40	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2058222_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2058222_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2058222_41	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-2058222_41	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-2058222_42	PHROG	phrog_247	major head protein	head and packaging
UHGV-2058222_42	UniRef90	UniRef90_UPI0013EB6380	coat protein	NA
UHGV-2058222_42	eggNOG-mapper	1121866.AUGK01000003_gene1431	NA	NA
UHGV-2058222_42	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-2058222_43	UniRef90	UniRef90_UPI0013EDAD34	phage head-tail connector protein	NA
UHGV-2058222_43	Structural annotation	TIGR01560	NA	NA
UHGV-2058222_44	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-2058222_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2058222_45	UniRef90	UniRef90_UPI0013EE076D	HK97 gp10 family phage protein	NA
UHGV-2058222_45	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-2058222_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2058222_45	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2058222_45	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2058222_46	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-2058222_47	PHROG	phrog_158	major tail protein	tail
UHGV-2058222_47	UniRef90	UniRef90_A0A3N0ASU6	Phage tail protein	NA
UHGV-2058222_47	eggNOG-mapper	1432847.V5US29_9VIRU	NA	NA
UHGV-2058222_47	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2058222_48	UniRef90	UniRef90_A0A415UWB5	NA	NA
UHGV-2058222_48	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-2058222_48	Pfam	PF16478	NA	DUF5055
UHGV-2058222_50	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2058222_50	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-2058222_50	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-2058222_51	PHROG	phrog_1194	NA	unknown function
UHGV-2058222_51	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-2058222_51	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2058222_52	PHROG	phrog_6616	tail protein	tail
UHGV-2058222_52	UniRef90	UniRef90_A0A2Y9BMC1	Peptidase S74 domain-containing protein	NA
UHGV-2058222_52	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-2058222_52	COG	COG4926	Phage-related protein	NA
UHGV-2058222_52	Structural annotation	PF05113, NF033848, COG4379	NA	NA
UHGV-2058222_53	eggNOG-mapper	33035.JPJF01000093_gene2239	NA	NA
UHGV-2058222_54	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2058222_56	PHROG	phrog_937	hemolysin	other
UHGV-2058222_57	PHROG	phrog_962	holin	lysis
UHGV-2058222_57	UniRef90	UniRef90_UPI00041A5A36	phage holin	NA
UHGV-2058222_57	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-2058222_57	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2058222_57	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2058222_57	COG	COG5546	NA	NA
UHGV-2058222_57	Structural annotation	COG5546	NA	NA