UHGV-2060225

Genome information

vOTU vOTU-019401

Genome length 35,012 bps

CDS count 56

Completeness 77.57% (medium-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-2060225
vOTU ID	vOTU-019401
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029409\|Ga0243858_100264\|provirus_122_45374
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	27
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	89.56
Jumbo phage	No

Genome content
Genome length	35,012 bps
GC content	42.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.69%
Average CDS length	589.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2060225_2	UniRef90	UniRef90_UPI00164BD196	NA	NA
UHGV-2060225_2	eggNOG-mapper	585394.RHOM_04340	NA	NA
UHGV-2060225_2	Pfam	PF14199	NA	DUF4317
UHGV-2060225_2	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-2060225_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2060225_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2060225_3	UniRef90	UniRef90_A0A3R6AG27	XRE family transcriptional regulator	NA
UHGV-2060225_3	eggNOG-mapper	397291.C804_01124	sequence-specific DNA binding	NA
UHGV-2060225_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2060225_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2060225_3	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-2060225_4	KOfam	K06993	K06993; ribonuclease H-related protein	NA
UHGV-2060225_4	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2060225_4	UniRef90	UniRef90_A0A6L6XKF1	Reverse transcriptase-like protein	NA
UHGV-2060225_4	eggNOG-mapper	622312.ROSEINA2194_01565	Ribonuclease HI	NA
UHGV-2060225_4	Pfam	PF01693	Caulimovirus viroplasmin	Cauli_VI
UHGV-2060225_4	Pfam	PF13456	Reverse transcriptase-like	RVT_3
UHGV-2060225_4	COG	COG0328	Ribonuclease HI	NA
UHGV-2060225_7	eggNOG-mapper	1235793.C809_02213	NA	NA
UHGV-2060225_8	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-2060225_8	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-2060225_10	PHROG	phrog_8684	NA	unknown function
UHGV-2060225_10	UniRef90	UniRef90_A0A3R6DED5	YopX domain-containing protein	NA
UHGV-2060225_10	eggNOG-mapper	411473.RUMCAL_00280	YopX protein	NA
UHGV-2060225_10	Pfam	PF09643	YopX protein	YopX
UHGV-2060225_10	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2060225_10	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2060225_11	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-2060225_12	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2060225_12	UniRef90	UniRef90_A0A6L6XD58	Restriction alleviation protein, Lar family	NA
UHGV-2060225_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2060225_12	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-2060225_12	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2060225_13	PHROG	phrog_874	NA	unknown function
UHGV-2060225_13	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-2060225_13	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2060225_16	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2060225_16	UniRef90	UniRef90_A0A6L6XJP0	Radical SAM protein	NA
UHGV-2060225_16	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-2060225_16	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2060225_16	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-2060225_17	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2060225_17	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2060225_17	UniRef90	UniRef90_A0A413Z5T1	DNA adenine methylase	NA
UHGV-2060225_17	eggNOG-mapper	1511.CLOST_1547	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2060225_17	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-2060225_17	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2060225_17	COG	COG0338	DNA-adenine methylase	NA
UHGV-2060225_17	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-2060225_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2060225_18	PHROG	phrog_29443	NA	unknown function
UHGV-2060225_18	UniRef90	UniRef90_A0A1Q9J771	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2060225_18	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-2060225_18	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2060225_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2060225_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2060225_18	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-2060225_20	UniRef90	UniRef90_A0A7W3XTE8	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA
UHGV-2060225_21	Structural annotation	PF09889, COG4068	NA	NA
UHGV-2060225_22	UniRef90	UniRef90_A0A3R6LT65	ABC transporter ATP-binding protein	NA
UHGV-2060225_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2060225_24	UniRef90	UniRef90_UPI001F14539B	NA	NA
UHGV-2060225_24	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-2060225_24	Pfam	PF07374	NA	DUF1492
UHGV-2060225_24	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2060225_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2060225_26	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2060225_26	UniRef90	UniRef90_A0A413SPG6	Phage portal protein	NA
UHGV-2060225_26	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-2060225_26	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2060225_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2060225_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2060225_26	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-2060225_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2060225_27	PHROG	phrog_10250	NA	unknown function
UHGV-2060225_27	UniRef90	UniRef90_A0A173S6P4	Phage terminase, large subunit, PBSX family	NA
UHGV-2060225_27	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-2060225_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2060225_27	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2060225_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2060225_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-2060225_27	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2060225_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-2060225_29	UniRef90	UniRef90_A0A6L6XEV1	Phage portal protein	NA
UHGV-2060225_29	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2060225_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2060225_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2060225_30	PHROG	phrog_1233	NA	unknown function
UHGV-2060225_30	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-2060225_30	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-2060225_31	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2060225_31	UniRef90	UniRef90_A0A6L6L8D3	Phage_Mu_F domain-containing protein	NA
UHGV-2060225_31	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2060225_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2060225_31	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2060225_31	COG	COG2369	NA	NA
UHGV-2060225_31	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2060225_32	eggNOG-mapper	861454.HMPREF9099_02115	NA	NA
UHGV-2060225_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2060225_34	UniRef90	UniRef90_A0A173S7H6	Phage minor structural protein GP20	NA
UHGV-2060225_34	eggNOG-mapper	1042156.CXIVA_00720	Phage minor structural protein GP20	NA
UHGV-2060225_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2060225_34	Structural annotation	PF06810	NA	NA
UHGV-2060225_35	PHROG	phrog_247	major head protein	head and packaging
UHGV-2060225_35	UniRef90	UniRef90_A0A1Q6SQL3	Coat protein	NA
UHGV-2060225_35	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-2060225_35	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-2060225_36	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2060225_36	UniRef90	UniRef90_A0A173S6L1	Phage gp6-like head-tail connector protein	NA
UHGV-2060225_36	eggNOG-mapper	1567014.A0A0A7RTX9_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-2060225_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2060225_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2060225_37	PHROG	phrog_615	head-tail adaptor	connector
UHGV-2060225_37	UniRef90	UniRef90_UPI001C0FD815	ABC transporter ATP-binding protein	NA
UHGV-2060225_37	eggNOG-mapper	742740.HMPREF9474_02351	NA	NA
UHGV-2060225_37	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-2060225_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2060225_38	UniRef90	UniRef90_A0A6L6XD71	HK97 gp10 family phage protein	NA
UHGV-2060225_38	eggNOG-mapper	742740.HMPREF9474_02350	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2060225_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2060225_38	Structural annotation	PF04883, COG5005	NA	NA
UHGV-2060225_39	PHROG	phrog_525	NA	unknown function
UHGV-2060225_39	UniRef90	UniRef90_A9KQ05	NA	NA
UHGV-2060225_39	eggNOG-mapper	742740.HMPREF9474_02349	NA	NA
UHGV-2060225_39	Pfam	PF20765	NA	DUF6838
UHGV-2060225_39	Structural annotation	PF20765, COG5003	NA	NA
UHGV-2060225_40	PHROG	phrog_966	NA	unknown function
UHGV-2060225_40	eggNOG-mapper	742740.HMPREF9474_02348	NA	NA
UHGV-2060225_41	PHROG	phrog_279	tail sheath	tail
UHGV-2060225_41	UniRef90	UniRef90_A0A6L6XE33	Phage tail protein	NA
UHGV-2060225_41	eggNOG-mapper	742740.HMPREF9474_02347	Phage tail sheath C-terminal domain	NA
UHGV-2060225_41	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-2060225_41	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2060225_41	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2060225_41	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-2060225_42	PHROG	phrog_365	tail protein	tail
UHGV-2060225_42	UniRef90	UniRef90_A0A7U9X6Z5	Phage-like element PBSX protein XkdM	NA
UHGV-2060225_42	eggNOG-mapper	1235790.C805_00599	Phage tail tube protein	NA
UHGV-2060225_42	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2060225_42	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-2060225_43	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2060225_43	UniRef90	UniRef90_D4M0Z0	Phage XkdN-like protein	NA
UHGV-2060225_43	eggNOG-mapper	742740.HMPREF9474_02345	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2060225_43	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2060225_43	Structural annotation	PF08890, COG4518	NA	NA
UHGV-2060225_44	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-2060225_44	UniRef90	UniRef90_A0A6L6XDA9	Tape measure protein	NA
UHGV-2060225_44	eggNOG-mapper	742740.HMPREF9474_02344	tape measure	NA
UHGV-2060225_44	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2060225_44	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2060225_44	COG	COG5281	Phage-related minor tail protein	NA
UHGV-2060225_44	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2060225_45	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2060225_45	PHROG	phrog_380	endolysin	lysis
UHGV-2060225_45	UniRef90	UniRef90_A0A413SP99	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2060225_45	eggNOG-mapper	742740.HMPREF9474_02343	Lysin motif	NA
UHGV-2060225_45	Pfam	PF01476	LysM domain	LysM
UHGV-2060225_45	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2060225_45	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-2060225_46	PHROG	phrog_400	tail protein	tail
UHGV-2060225_46	UniRef90	UniRef90_A0A413SP95	Hydrolase	NA
UHGV-2060225_46	eggNOG-mapper	1029718.SFBM_0133	PFAM Phage late control gene D protein (GPD)	NA
UHGV-2060225_46	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-2060225_46	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2060225_47	PHROG	phrog_579	NA	unknown function
UHGV-2060225_47	UniRef90	UniRef90_A0A413SP62	NA	NA
UHGV-2060225_47	eggNOG-mapper	357809.Cphy_0791	NA	NA
UHGV-2060225_47	Pfam	PF10844	NA	DUF2577
UHGV-2060225_47	Structural annotation	PF10844	NA	NA
UHGV-2060225_48	PHROG	phrog_120	baseplate protein	tail
UHGV-2060225_48	UniRef90	UniRef90_A0A413SPA1	NA	NA
UHGV-2060225_48	eggNOG-mapper	1235790.C805_00606	NA	NA
UHGV-2060225_48	Pfam	PF10934	NA	DUF2634
UHGV-2060225_48	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2060225_48	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-2060225_49	PHROG	phrog_6	baseplate protein	tail
UHGV-2060225_49	UniRef90	UniRef90_A0A6L6XEW4	Phage tail protein	NA
UHGV-2060225_49	eggNOG-mapper	1449050.JNLE01000005_gene4831	Baseplate J-like protein	NA
UHGV-2060225_49	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2060225_49	COG	COG3299	NA	NA
UHGV-2060225_49	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2060225_50	PHROG	phrog_521	tail protein	tail
UHGV-2060225_50	UniRef90	UniRef90_A0A6L6XE44	NA	NA
UHGV-2060225_50	eggNOG-mapper	1163671.JAGI01000002_gene2842	NA	NA
UHGV-2060225_50	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2060225_50	Structural annotation	PF10076, COG3778	NA	NA
UHGV-2060225_53	PHROG	phrog_134	NA	unknown function
UHGV-2060225_53	UniRef90	UniRef90_A0A6L6L8A0	XkdX family protein	NA
UHGV-2060225_53	eggNOG-mapper	1298920.KI911353_gene4834	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-2060225_53	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2060225_53	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2060225_55	PHROG	phrog_199	holin	lysis
UHGV-2060225_55	UniRef90	UniRef90_A0A414REB4	Holin	NA
UHGV-2060225_55	eggNOG-mapper	428126.CLOSPI_02191	Bacteriophage holin family	NA
UHGV-2060225_55	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2060225_55	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2060225_55	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2060225_56	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-2060225_56	PHROG	phrog_7	endolysin	lysis
UHGV-2060225_56	UniRef90	UniRef90_C7GBY9	Lysozyme	NA
UHGV-2060225_56	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-2060225_56	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-2060225_56	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2060225_56	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-2060225_56	HAMAP	MF_04110	Endolysin	NA
UHGV-2060225_56	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA