UHGV-2060495

Genome information

Genome length 37,524 bps

CDS count 58

Completeness 97.89% (high-quality)

geNomad score 0.9694

Prediction confidence Confident

Genome information
Genome ID	UHGV-2060495
vOTU ID	vOTU-063410
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029422\|Ga0242786_100176\|provirus_85819_123342
BioSample	SAMN05545032
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.89% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9694
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.79
Jumbo phage	No

Genome content
Genome length	37,524 bps
GC content	50.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	88.78%
Average CDS length	576.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2060495_1	KOfam	K09825	perR; Fur family transcriptional regulator, peroxide stress response regulator	NA
UHGV-2060495_1	PHROG	phrog_13084	NA	unknown function
UHGV-2060495_1	UniRef90	UniRef90_A0A1Y4N3W5	Transcriptional repressor	NA
UHGV-2060495_1	eggNOG-mapper	1507.HMPREF0262_00256	Belongs to the Fur family	NA
UHGV-2060495_1	Pfam	PF01475	Ferric uptake regulator family	FUR
UHGV-2060495_1	COG	COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	NA
UHGV-2060495_2	PHROG	phrog_2389	QueD-like 6-pyruvoyl-tetrahydropterin synthase	moron, auxiliary metabolic gene and host takeover
UHGV-2060495_2	UniRef90	UniRef90_G5IIS3	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA
UHGV-2060495_2	eggNOG-mapper	445972.ANACOL_01686	6-pyruvoyl tetrahydropterin synthase	NA
UHGV-2060495_2	Pfam	PF01242	6-pyruvoyl tetrahydropterin synthase	PTPS
UHGV-2060495_3	PHROG	phrog_1281	NA	unknown function
UHGV-2060495_3	UniRef90	UniRef90_A0A1V5X7K8	NA	NA
UHGV-2060495_3	eggNOG-mapper	411459.RUMOBE_01368	Phage-associated protein	NA
UHGV-2060495_3	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-2060495_3	COG	COG3600	NA	NA
UHGV-2060495_4	eggNOG-mapper	572479.Hprae_2026	NA	NA
UHGV-2060495_4	Pfam	PF20712	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
UHGV-2060495_5	PHROG	phrog_297	holin	lysis
UHGV-2060495_5	UniRef90	UniRef90_UPI0009F738EC	phage holin	NA
UHGV-2060495_5	eggNOG-mapper	428125.CLOLEP_01780	COG COG5546 Small integral membrane protein	NA
UHGV-2060495_5	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2060495_5	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2060495_5	COG	COG5546	NA	NA
UHGV-2060495_5	Structural annotation	COG5546	NA	NA
UHGV-2060495_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2060495_7	PHROG	phrog_435	endolysin	lysis
UHGV-2060495_7	UniRef90	UniRef90_A0A1V5TUC9	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2060495_7	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-2060495_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2060495_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2060495_7	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-2060495_10	PHROG	phrog_13879	NA	unknown function
UHGV-2060495_10	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-2060495_10	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2060495_11	PHROG	phrog_1194	NA	unknown function
UHGV-2060495_11	eggNOG-mapper	324057.Pjdr2_1553	NA	NA
UHGV-2060495_12	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2060495_12	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2060495_12	UniRef90	UniRef90_A0A4Z0Y6Y0	AntA/AntB antirepressor	NA
UHGV-2060495_12	eggNOG-mapper	742738.HMPREF9460_01348	P22_AR N-terminal domain	NA
UHGV-2060495_12	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2060495_12	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2060495_12	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-2060495_15	UniRef90	UniRef90_UPI001C0A7257	ribbon-helix-helix domain-containing protein	NA
UHGV-2060495_15	eggNOG-mapper	537013.CLOSTMETH_00118	NA	NA
UHGV-2060495_15	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-2060495_17	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2060495_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2060495_18	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-2060495_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2060495_19	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2060495_19	UniRef90	UniRef90_UPI0006C0E497	NA	NA
UHGV-2060495_19	eggNOG-mapper	1294142.CINTURNW_1697	NA	NA
UHGV-2060495_19	Structural annotation	PF19591	NA	NA
UHGV-2060495_20	PHROG	phrog_158	major tail protein	tail
UHGV-2060495_20	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-2060495_20	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-2060495_20	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-2060495_20	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2060495_21	Structural annotation	PF05657	NA	NA
UHGV-2060495_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2060495_22	UniRef90	UniRef90_K5A327	Putative phage protein	NA
UHGV-2060495_22	eggNOG-mapper	1499683.CCFF01000014_gene3905	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2060495_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2060495_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2060495_22	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2060495_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2060495_25	PHROG	phrog_283	major head protein	head and packaging
UHGV-2060495_25	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-2060495_25	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-2060495_25	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2060495_25	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2060495_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2060495_26	UniRef90	UniRef90_UPI0018A8F1CB	phage scaffolding protein	NA
UHGV-2060495_26	eggNOG-mapper	645991.Sgly_0339	PFAM Phage minor structural	NA
UHGV-2060495_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2060495_26	Structural annotation	PF06810	NA	NA
UHGV-2060495_28	Structural annotation	PF07073, MF_00436, TIGR02383, COG4568	NA	NA
UHGV-2060495_29	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2060495_29	UniRef90	UniRef90_A0A1M6MYA3	Phage putative head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2060495_29	eggNOG-mapper	1280689.AUJC01000003_gene964	Phage Mu protein F like protein	NA
UHGV-2060495_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2060495_29	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-2060495_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2060495_29	COG	COG2369	NA	NA
UHGV-2060495_29	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2060495_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-2060495_30	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-2060495_30	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2060495_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2060495_30	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2060495_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2060495_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2060495_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2060495_31	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-2060495_31	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-2060495_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2060495_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2060495_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2060495_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-2060495_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2060495_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2060495_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2060495_32	UniRef90	UniRef90_UPI000A267627	terminase small subunit	NA
UHGV-2060495_32	eggNOG-mapper	1226322.HMPREF1545_04056	Terminase Small Subunit	NA
UHGV-2060495_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2060495_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2060495_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2060495_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2060495_33	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-2060495_33	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-2060495_36	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-2060495_36	UniRef90	UniRef90_A0A3D4CBP5	NA	NA
UHGV-2060495_36	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-2060495_36	Pfam	PF12961	NA	DUF3850
UHGV-2060495_36	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-2060495_40	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2060495_40	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2060495_40	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2060495_40	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2060495_40	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2060495_40	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2060495_41	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2060495_41	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2060495_41	UniRef90	UniRef90_A0A6N8HZR2	DNA helicase	NA
UHGV-2060495_41	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-2060495_41	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2060495_41	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2060495_41	COG	COG0305	Replicative DNA helicase	NA
UHGV-2060495_41	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2060495_42	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2060495_42	UniRef90	UniRef90_A0A554J835	Bacteriophage-like protein	NA
UHGV-2060495_42	eggNOG-mapper	742738.HMPREF9460_04047	DnaD domain protein	NA
UHGV-2060495_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2060495_42	Structural annotation	PF13463, NF040642, COG1846	NA	NA
UHGV-2060495_43	PHROG	phrog_2113	NA	unknown function
UHGV-2060495_43	eggNOG-mapper	697329.Rumal_2721	NA	NA
UHGV-2060495_43	Structural annotation	PF21715	NA	NA
UHGV-2060495_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2060495_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2060495_44	UniRef90	UniRef90_A0A355G100	Single-stranded DNA-binding protein	NA
UHGV-2060495_44	eggNOG-mapper	445972.ANACOL_04434	Single-stranded DNA-binding protein	NA
UHGV-2060495_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2060495_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2060495_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2060495_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2060495_44	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2060495_45	PHROG	phrog_7566	NA	unknown function
UHGV-2060495_45	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-2060495_45	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-2060495_46	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2060495_46	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2060495_46	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2060495_46	Structural annotation	PF05772	NA	NA
UHGV-2060495_47	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2060495_47	UniRef90	UniRef90_A0A1C6CBK6	ERF superfamily	NA
UHGV-2060495_47	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-2060495_47	Pfam	PF04404	ERF superfamily	ERF
UHGV-2060495_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2060495_47	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2060495_48	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2060495_48	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-2060495_48	eggNOG-mapper	420246.GTNG_2855	Siphovirus Gp157	NA
UHGV-2060495_48	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2060495_48	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2060495_49	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2060495_49	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2060495_49	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2060495_49	Structural annotation	PF01507, MF_00064, TIGR02057, COG0175	NA	NA
UHGV-2060495_51	eggNOG-mapper	768710.DesyoDRAFT_1143	NA	NA
UHGV-2060495_52	UniRef90	UniRef90_A0A3D4ZNX1	DNA-binding protein	NA
UHGV-2060495_52	eggNOG-mapper	1408437.JNJN01000010_gene1230	NA	NA
UHGV-2060495_52	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-2060495_55	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2060495_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2060495_55	UniRef90	UniRef90_A0A7G9WGB7	Helix-turn-helix transcriptional regulator	NA
UHGV-2060495_55	eggNOG-mapper	665956.HMPREF1032_00148	NA	NA
UHGV-2060495_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2060495_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2060495_55	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2060495_57	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2060495_57	UniRef90	UniRef90_UPI001CC1127B	helix-turn-helix domain-containing protein	NA
UHGV-2060495_57	eggNOG-mapper	857293.CAAU_0901	helix-turn-helix	NA
UHGV-2060495_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2060495_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2060495_58	KOfam	K14059	int; integrase	NA
UHGV-2060495_58	PHROG	phrog_1	integrase	integration and excision
UHGV-2060495_58	UniRef90	UniRef90_A0A413G0Q9	Site-specific integrase	NA
UHGV-2060495_58	eggNOG-mapper	697329.Rumal_2676	Phage integrase SAM-like domain	NA
UHGV-2060495_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2060495_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2060495_58	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA