UHGV-2061467

Genome information

Genome length 28,277 bps

CDS count 44

Completeness 70.19% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-2061467
vOTU ID	vOTU-028346
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029365\|Ga0243866_1000229\|provirus_56321_90882
BioSample	SAMN05971577
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.58
Jumbo phage	No

Genome content
Genome length	28,277 bps
GC content	59.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	96.41%
Average CDS length	624.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2061467_2	PHROG	phrog_199	holin	lysis
UHGV-2061467_2	UniRef90	UniRef90_R9N6H8	Toxin secretion/phage lysis holin	NA
UHGV-2061467_2	eggNOG-mapper	1235800.C819_02219	Bacteriophage holin family	NA
UHGV-2061467_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2061467_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2061467_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2061467_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2061467_3	KOfam	K07273	acm; lysozyme	NA
UHGV-2061467_3	PHROG	phrog_291	endolysin	lysis
UHGV-2061467_3	UniRef90	UniRef90_D1PR98	Glycosyl hydrolase family 25	NA
UHGV-2061467_3	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-2061467_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2061467_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2061467_3	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-2061467_4	KOfam	K21038	brt; reverse transcriptase [EC:2.7.7.49]	NA
UHGV-2061467_4	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2061467_4	UniRef90	UniRef90_A0A174XM65	Retron-type reverse transcriptase	NA
UHGV-2061467_4	eggNOG-mapper	397290.C810_00436	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2061467_4	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2061467_4	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2061467_4	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2061467_4	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-2061467_5	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-2061467_5	UniRef90	UniRef90_UPI0003B741C1	diversity-generating retroelement protein Avd	NA
UHGV-2061467_5	eggNOG-mapper	570952.ATVH01000011_gene349	23S rRNA-intervening sequence protein	NA
UHGV-2061467_5	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-2061467_5	Structural annotation	PF05635, NF033474	NA	NA
UHGV-2061467_6	PHROG	phrog_11262	tail protein	tail
UHGV-2061467_6	UniRef90	UniRef90_A0A416BWU4	FGE-sulfatase domain-containing protein	NA
UHGV-2061467_6	eggNOG-mapper	411468.CLOSCI_00535	Sulfatase-modifying factor enzyme 1	NA
UHGV-2061467_6	Pfam	PF03781	Sulfatase-modifying factor enzyme 1	FGE-sulfatase
UHGV-2061467_6	Structural annotation	PF03781, MF_02035, TIGR03529, COG1262	NA	NA
UHGV-2061467_7	Structural annotation	PF13753, NF009633	NA	NA
UHGV-2061467_8	PHROG	phrog_9534	head protein	head and packaging
UHGV-2061467_8	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-2061467_9	PHROG	phrog_538	minor tail protein	tail
UHGV-2061467_9	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2061467_9	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-2061467_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2061467_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2061467_10	PHROG	phrog_36410	NA	unknown function
UHGV-2061467_10	UniRef90	UniRef90_UPI0011065E28	phage tail family protein	NA
UHGV-2061467_10	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-2061467_10	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2061467_11	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2061467_11	UniRef90	UniRef90_A0A285PTB9	Phage tail tape measure protein	NA
UHGV-2061467_11	eggNOG-mapper	641112.ACOK01000073_gene2904	Phage tail tape measure protein, TP901 family	NA
UHGV-2061467_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2061467_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2061467_11	COG	COG5283	Phage-related tail protein	NA
UHGV-2061467_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2061467_12	PHROG	phrog_706	NA	unknown function
UHGV-2061467_12	UniRef90	UniRef90_A0A8J6LUV6	Bacteriophage Gp15 family protein	NA
UHGV-2061467_12	eggNOG-mapper	573061.Clocel_3534	Bacteriophage Gp15 protein	NA
UHGV-2061467_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2061467_12	Structural annotation	PF06854	NA	NA
UHGV-2061467_13	PHROG	phrog_4450	NA	unknown function
UHGV-2061467_13	eggNOG-mapper	573061.Clocel_3535	NA	NA
UHGV-2061467_13	Pfam	PF20378	NA	DUF6673
UHGV-2061467_13	Structural annotation	PF10666	NA	NA
UHGV-2061467_14	PHROG	phrog_3099	NA	unknown function
UHGV-2061467_14	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-2061467_14	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-2061467_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2061467_15	PHROG	phrog_3266	tail completion	connector
UHGV-2061467_15	UniRef90	UniRef90_A0A3C0IHV8	Chloramphenicol resistance protein	NA
UHGV-2061467_15	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-2061467_15	Structural annotation	PF12691	NA	NA
UHGV-2061467_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2061467_16	UniRef90	UniRef90_A0A315YQZ5	Minor capsid protein	NA
UHGV-2061467_16	eggNOG-mapper	645991.Sgly_0344	NA	NA
UHGV-2061467_16	Structural annotation	PF11114	NA	NA
UHGV-2061467_17	PHROG	phrog_3366	NA	unknown function
UHGV-2061467_17	eggNOG-mapper	999411.HMPREF1092_03319	NA	NA
UHGV-2061467_17	Pfam	PF20536	NA	DUF6751
UHGV-2061467_17	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2061467_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2061467_19	PHROG	phrog_267	major head protein	head and packaging
UHGV-2061467_19	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-2061467_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2061467_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2061467_20	UniRef90	UniRef90_R5GVJ3	Bacteriophage SPP1 complete nucleotide sequence	NA
UHGV-2061467_20	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-2061467_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2061467_20	Structural annotation	PF06810	NA	NA
UHGV-2061467_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2061467_22	UniRef90	UniRef90_A0A2K9V3K1	Minor capsid protein	NA
UHGV-2061467_22	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-2061467_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2061467_22	COG	COG2369	NA	NA
UHGV-2061467_22	Structural annotation	PF06152, PF07737, TIGR01641, COG2369	NA	NA
UHGV-2061467_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-2061467_23	UniRef90	UniRef90_A0A173Y8E3	Phage portal protein, putative, A118 family	NA
UHGV-2061467_23	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-2061467_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2061467_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2061467_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2061467_24	UniRef90	UniRef90_A0A3D3FC70	PBSX family phage terminase large subunit	NA
UHGV-2061467_24	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-2061467_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2061467_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2061467_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-2061467_24	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2061467_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2061467_26	PHROG	phrog_1233	NA	unknown function
UHGV-2061467_26	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-2061467_28	PHROG	phrog_1672	NA	unknown function
UHGV-2061467_30	PHROG	phrog_111	DNA methyltransferase	other
UHGV-2061467_30	UniRef90	UniRef90_A0A1Y4EVK6	Adenine methyltransferase	NA
UHGV-2061467_30	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-2061467_30	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-2061467_30	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-2061467_30	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-2061467_31	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2061467_31	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2061467_31	UniRef90	UniRef90_UPI000C7A0A0E	ATP-binding protein	NA
UHGV-2061467_31	eggNOG-mapper	428125.CLOLEP_01820	NA	NA
UHGV-2061467_31	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-2061467_31	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2061467_31	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-2061467_32	PHROG	phrog_15768	NA	unknown function
UHGV-2061467_32	UniRef90	UniRef90_A0A843HJY2	Helix-turn-helix domain-containing protein	NA
UHGV-2061467_32	eggNOG-mapper	553220.CAMGR0001_2120	NA	NA
UHGV-2061467_32	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2061467_32	Structural annotation	PF13730, MF_01909, NF041413, COG3355	NA	NA
UHGV-2061467_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2061467_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2061467_33	UniRef90	UniRef90_D1PJS6	Single-stranded DNA-binding protein	NA
UHGV-2061467_33	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-2061467_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2061467_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2061467_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2061467_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2061467_33	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2061467_34	PHROG	phrog_7566	NA	unknown function
UHGV-2061467_34	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-2061467_35	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2061467_35	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2061467_35	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-2061467_35	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2061467_36	Structural annotation	PF18300	NA	NA
UHGV-2061467_37	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2061467_37	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-2061467_37	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-2061467_37	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-2061467_38	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2061467_38	UniRef90	UniRef90_UPI00189A2233	siphovirus Gp157 family protein	NA
UHGV-2061467_38	eggNOG-mapper	741091.Rahaq_4954	Siphovirus Gp157	NA
UHGV-2061467_38	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2061467_38	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2061467_40	UniRef90	UniRef90_H1CAR0	HTH cro/C1-type domain-containing protein	NA
UHGV-2061467_40	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2061467_41	Structural annotation	PF21596	NA	NA
UHGV-2061467_43	PHROG	phrog_31564	NA	unknown function