UHGV-2061641

Genome information

Genome length 43,313 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-2061641
vOTU ID	vOTU-014441
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029409\|Ga0243858_100209\|provirus_45584_88896
BioSample	SAMN05971569
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.52
Jumbo phage	No

Genome content
Genome length	43,313 bps
GC content	53.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	87.04%
Average CDS length	713.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2061641_2	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2061641_2	UniRef90	UniRef90_F7UY65	SF3 helicase domain-containing protein	NA
UHGV-2061641_2	eggNOG-mapper	502558.EGYY_02790	Poxvirus D5 protein-like	NA
UHGV-2061641_2	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2061641_2	Pfam	PF19263	NA	DUF5906
UHGV-2061641_2	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2061641_2	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2061641_2	Structural annotation	PF05272, PF03288, PF08706, TIGR01613, COG3378	NA	NA
UHGV-2061641_3	UniRef90	UniRef90_F7UY66	Predicted esterase	NA
UHGV-2061641_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2061641_4	Structural annotation	PF07374	NA	NA
UHGV-2061641_5	PHROG	phrog_31146	NA	unknown function
UHGV-2061641_5	UniRef90	UniRef90_F7UY68	Cytochrome c	NA
UHGV-2061641_5	eggNOG-mapper	502558.EGYY_02820	protein involved in exopolysaccharide biosynthesis	NA
UHGV-2061641_5	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-2061641_6	eggNOG-mapper	502558.EGYY_02830	NA	NA
UHGV-2061641_7	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2061641_7	UniRef90	UniRef90_UPI001AA16649	metallophosphoesterase	NA
UHGV-2061641_7	eggNOG-mapper	443254.Marpi_0340	metallophosphoesterase	NA
UHGV-2061641_7	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-2061641_7	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-2061641_9	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2061641_9	UniRef90	UniRef90_UPI001D088AD3	DNA-packaging protein	NA
UHGV-2061641_9	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2061641_9	Structural annotation	PF16677	NA	NA
UHGV-2061641_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2061641_10	PHROG	phrog_10250	NA	unknown function
UHGV-2061641_10	UniRef90	UniRef90_UPI001AA0C50E	PBSX family phage terminase large subunit	NA
UHGV-2061641_10	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-2061641_10	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2061641_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2061641_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-2061641_10	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2061641_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-2061641_11	UniRef90	UniRef90_UPI001AA0B7FF	phage portal protein	NA
UHGV-2061641_11	eggNOG-mapper	500633.CLOHIR_01446	phage portal protein, SPP1	NA
UHGV-2061641_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2061641_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2061641_12	PHROG	phrog_2662	portal protein	head and packaging
UHGV-2061641_12	UniRef90	UniRef90_UPI001AA1932C	minor capsid protein	NA
UHGV-2061641_12	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-2061641_12	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2061641_12	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2061641_12	COG	COG2369	NA	NA
UHGV-2061641_12	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2061641_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2061641_13	UniRef90	UniRef90_UPI001AA17902	HK97 gp10 family phage protein	NA
UHGV-2061641_13	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2061641_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2061641_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2061641_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2061641_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2061641_14	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-2061641_14	Structural annotation	PF06810	NA	NA
UHGV-2061641_15	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-2061641_15	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2061641_18	PHROG	phrog_17977	NA	unknown function
UHGV-2061641_18	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-2061641_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2061641_18	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2061641_19	PHROG	phrog_17405	head protein	head and packaging
UHGV-2061641_19	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-2061641_19	Structural annotation	PF11367	NA	NA
UHGV-2061641_20	PHROG	phrog_885	major tail protein	tail
UHGV-2061641_20	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-2061641_20	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-2061641_20	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2061641_23	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2061641_23	UniRef90	UniRef90_R5YSS7	Phage-related protein	NA
UHGV-2061641_23	eggNOG-mapper	521003.COLINT_02352	nuclear chromosome segregation	NA
UHGV-2061641_23	COG	COG5412	Phage-related protein	NA
UHGV-2061641_23	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2061641_25	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-2061641_26	PHROG	phrog_32308	NA	unknown function
UHGV-2061641_26	eggNOG-mapper	509191.AEDB02000023_gene3618	NA	NA
UHGV-2061641_29	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-2061641_29	PHROG	phrog_5073	tail fiber protein	tail
UHGV-2061641_29	eggNOG-mapper	877414.ATWA01000062_gene1616	NA	NA
UHGV-2061641_29	Pfam	PF17758	Proteasomal ATPase OB N-terminal domain	Prot_ATP_ID_OB_N
UHGV-2061641_29	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2061641_30	KOfam	K07273	acm; lysozyme	NA
UHGV-2061641_30	PHROG	phrog_291	endolysin	lysis
UHGV-2061641_30	UniRef90	UniRef90_A0A1E8W190	LysM domain-containing protein	NA
UHGV-2061641_30	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-2061641_30	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2061641_30	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2061641_30	Pfam	PF01476	LysM domain	LysM
UHGV-2061641_30	COG	COG1388	LysM repeat	NA
UHGV-2061641_30	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2061641_32	PHROG	phrog_443	holin	lysis
UHGV-2061641_32	UniRef90	UniRef90_UPI001AA15D29	holin	NA
UHGV-2061641_32	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-2061641_32	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2061641_33	eggNOG-mapper	502558.EGYY_02850	NA	NA
UHGV-2061641_34	UniRef90	UniRef90_F7UY72	Predicted archaeal kinase of the sugar kinase superfamily	NA
UHGV-2061641_35	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2061641_35	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-2061641_35	UniRef90	UniRef90_A0A5K1IQ89	HTH-type transcriptional regulator SinR	NA
UHGV-2061641_35	eggNOG-mapper	502558.EGYY_02870	sequence-specific DNA binding	NA
UHGV-2061641_35	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2061641_35	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2061641_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2061641_35	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2061641_36	UniRef90	UniRef90_A0A7X9UA92	Helix-turn-helix domain-containing protein	NA
UHGV-2061641_36	eggNOG-mapper	502558.EGYY_02890	NA	NA
UHGV-2061641_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2061641_38	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2061641_38	PHROG	phrog_95	integrase	integration and excision
UHGV-2061641_38	UniRef90	UniRef90_A0A4S2F657	Recombinase family protein	NA
UHGV-2061641_38	eggNOG-mapper	502558.EGYY_12000	Resolvase, N terminal domain	NA
UHGV-2061641_38	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2061641_38	Pfam	PF07508	Recombinase	Recombinase
UHGV-2061641_38	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2061641_38	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2061641_38	Structural annotation	PF00239, PF07508, PF15188, NF041201, COG1961	NA	NA
UHGV-2061641_39	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2061641_39	UniRef90	UniRef90_A0A1M6MPT6	NA	NA
UHGV-2061641_39	eggNOG-mapper	1232452.BAIB02000009_gene1948	NA	NA
UHGV-2061641_39	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2061641_39	Pfam	PF19481	NA	DUF6017
UHGV-2061641_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2061641_39	Structural annotation	PF19481, TIGR04176, COG3355	NA	NA
UHGV-2061641_40	UniRef90	UniRef90_A0A1Y4B9A2	NA	NA
UHGV-2061641_40	eggNOG-mapper	411459.RUMOBE_01806	NA	NA
UHGV-2061641_40	Pfam	PF17295	NA	DUF5348
UHGV-2061641_40	Structural annotation	PF17295	NA	NA
UHGV-2061641_41	PHROG	phrog_34625	NA	unknown function
UHGV-2061641_41	UniRef90	UniRef90_A7VRN2	PcfB family protein	NA
UHGV-2061641_41	eggNOG-mapper	272563.CD630_11160	NA	NA
UHGV-2061641_41	Pfam	PF12687	NA	DUF3801
UHGV-2061641_41	Structural annotation	PF12687, TIGR04140	NA	NA
UHGV-2061641_42	KOfam	K03205	virD4, lvhD4; type IV secretion system protein VirD4 [EC:7.4.2.8]	NA
UHGV-2061641_42	UniRef90	UniRef90_A0A1C5XVA8	Conjugal transfer protein traG	NA
UHGV-2061641_42	eggNOG-mapper	411468.CLOSCI_01091	COG COG3505 Type IV secretory pathway, VirD4 components	NA
UHGV-2061641_42	Pfam	PF02534	Type IV secretory system Conjugative DNA transfer	T4SS-DNA_transf
UHGV-2061641_42	COG	COG3505	Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase	NA
UHGV-2061641_42	Structural annotation	PF02534, NF010472, COG3505	NA	NA
UHGV-2061641_43	PHROG	phrog_24764	NA	unknown function
UHGV-2061641_43	UniRef90	UniRef90_A0A2N5NPY4	TnpV protein	NA
UHGV-2061641_43	eggNOG-mapper	1507.HMPREF0262_02783	Transposon-encoded protein TnpV	NA
UHGV-2061641_43	Pfam	PF14198	Transposon-encoded protein TnpV	TnpV
UHGV-2061641_43	Structural annotation	PF14198	NA	NA
UHGV-2061641_44	eggNOG-mapper	1507.HMPREF0262_02784	NA	NA
UHGV-2061641_45	eggNOG-mapper	1507.HMPREF0262_02785	NA	NA
UHGV-2061641_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2061641_46	UniRef90	UniRef90_A0A0E2H432	HTH cro/C1-type domain-containing protein	NA
UHGV-2061641_46	eggNOG-mapper	552396.HMPREF0863_00543	NA	NA
UHGV-2061641_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2061641_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2061641_46	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-2061641_47	eggNOG-mapper	500632.CLONEX_01875	NA	NA
UHGV-2061641_48	UniRef90	UniRef90_UPI00189AE4CD	molecular chaperone	NA
UHGV-2061641_48	eggNOG-mapper	500632.CLONEX_01874	NA	NA
UHGV-2061641_49	UniRef90	UniRef90_A0A3E3IGG7	Serine/arginine repetitive matrix protein 2	NA
UHGV-2061641_49	eggNOG-mapper	552396.HMPREF0863_00539	NA	NA
UHGV-2061641_49	Structural annotation	PF01076, NF041497	NA	NA
UHGV-2061641_50	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2061641_50	PHROG	phrog_11992	NA	unknown function
UHGV-2061641_50	UniRef90	UniRef90_A0A0E2H5A0	ZnF_CHCC domain-containing protein	NA
UHGV-2061641_50	eggNOG-mapper	500632.CLONEX_01872	NA	NA
UHGV-2061641_50	PADLOC	drt-cluster192	DRT	DRT
UHGV-2061641_50	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2061641_50	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2061641_50	Structural annotation	PF01807	NA	NA
UHGV-2061641_51	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2061641_51	UniRef90	UniRef90_A0A395YIL3	Virulence-associated protein E	NA
UHGV-2061641_51	eggNOG-mapper	903814.ELI_0218	NA	NA
UHGV-2061641_51	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2061641_51	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2061641_51	Structural annotation	PF05272, MF_04000, NF005477, COG5545	NA	NA
UHGV-2061641_52	eggNOG-mapper	903814.ELI_0219	NA	NA
UHGV-2061641_52	AcrCatalog	cluster_6032	NA	NA
UHGV-2061641_53	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2061641_53	PHROG	phrog_95	integrase	integration and excision
UHGV-2061641_53	UniRef90	UniRef90_G9YKL8	Resolvase protein	NA
UHGV-2061641_53	eggNOG-mapper	903814.ELI_0220	NA	NA
UHGV-2061641_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2061641_53	Pfam	PF07508	Recombinase	Recombinase
UHGV-2061641_53	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2061641_53	Pfam	PF14287	NA	DUF4368
UHGV-2061641_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2061641_53	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA