UHGV-2061722

Genome information

Genome length 36,235 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-2061722
vOTU ID	vOTU-014394
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029365\|Ga0243866_1000005\|provirus_319796_356030
BioSample	SAMN05971577
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.08
Jumbo phage	No

Genome content
Genome length	36,235 bps
GC content	43.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.76%
Average CDS length	704.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2061722_1	PHROG	phrog_10292	NA	unknown function
UHGV-2061722_1	UniRef90	UniRef90_R6T9F1	TM2 domain-containing protein	NA
UHGV-2061722_1	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-2061722_1	Pfam	PF05154	TM2 domain	TM2
UHGV-2061722_1	COG	COG2314	NA	NA
UHGV-2061722_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2061722_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2061722_2	UniRef90	UniRef90_R6T2B0	Peptidase S24-like protein	NA
UHGV-2061722_2	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-2061722_2	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2061722_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2061722_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2061722_2	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-2061722_3	UniRef90	UniRef90_R6TEQ2	Conserved domain protein	NA
UHGV-2061722_3	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-2061722_3	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2061722_5	PHROG	phrog_9576	NA	unknown function
UHGV-2061722_5	eggNOG-mapper	1159488.SEQMU2_02040	NA	NA
UHGV-2061722_11	PHROG	phrog_38338	NA	unknown function
UHGV-2061722_11	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2061722_11	eggNOG-mapper	641112.ACOK01000073_gene2869	NA	NA
UHGV-2061722_12	PHROG	phrog_8470	NA	unknown function
UHGV-2061722_12	UniRef90	UniRef90_UPI0019175B9C	PcfJ domain-containing protein	NA
UHGV-2061722_12	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-2061722_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2061722_12	Structural annotation	PF14284	NA	NA
UHGV-2061722_13	PHROG	phrog_15609	NA	unknown function
UHGV-2061722_13	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-2061722_13	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2061722_13	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2061722_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2061722_14	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-2061722_14	eggNOG-mapper	881621.LIV_2167	Siphovirus Gp157	NA
UHGV-2061722_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2061722_14	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2061722_15	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2061722_15	UniRef90	UniRef90_A0A373VPJ3	ATP-binding protein (Fragment)	NA
UHGV-2061722_15	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-2061722_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-2061722_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2061722_16	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2061722_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2061722_16	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-2061722_16	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-2061722_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2061722_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2061722_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2061722_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2061722_16	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2061722_17	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2061722_17	UniRef90	UniRef90_A0A373SNE0	VRR-NUC domain-containing protein	NA
UHGV-2061722_17	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-2061722_17	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2061722_17	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-2061722_18	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2061722_18	UniRef90	UniRef90_A0A373SL44	NA	NA
UHGV-2061722_18	eggNOG-mapper	1423807.BACO01000050_gene1454	NA	NA
UHGV-2061722_18	Pfam	PF05037	NA	DUF669
UHGV-2061722_18	Structural annotation	PF05037, NF004948	NA	NA
UHGV-2061722_19	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2061722_19	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2061722_19	UniRef90	UniRef90_A0A356CZ91	DNA primase	NA
UHGV-2061722_19	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-2061722_19	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2061722_19	Pfam	PF19263	NA	DUF5906
UHGV-2061722_19	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2061722_19	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2061722_19	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2061722_19	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-2061722_21	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2061722_22	eggNOG-mapper	515620.EUBELI_20304	NA	NA
UHGV-2061722_22	Structural annotation	MF_00637, TIGR01925, COG2172	NA	NA
UHGV-2061722_23	UniRef90	UniRef90_C4Z656	NA	NA
UHGV-2061722_23	Structural annotation	PF14213	NA	NA
UHGV-2061722_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2061722_25	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-2061722_25	UniRef90	UniRef90_A0A1C6IMR2	Phage terminase, large subunit, PBSX family	NA
UHGV-2061722_25	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2061722_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2061722_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2061722_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2061722_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2061722_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2061722_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-2061722_26	UniRef90	UniRef90_R6TDI6	Phage portal protein SPP1 Gp6-like	NA
UHGV-2061722_26	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-2061722_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2061722_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2061722_27	UniRef90	UniRef90_R6SXL7	Phage minor capsid protein 2	NA
UHGV-2061722_27	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-2061722_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2061722_27	COG	COG2369	NA	NA
UHGV-2061722_27	Structural annotation	PF06152	NA	NA
UHGV-2061722_28	Structural annotation	PF12305	NA	NA
UHGV-2061722_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2061722_29	UniRef90	UniRef90_R6U550	Phage minor structural protein GP20	NA
UHGV-2061722_29	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2061722_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2061722_29	Structural annotation	PF06810	NA	NA
UHGV-2061722_30	PHROG	phrog_544	major head protein	head and packaging
UHGV-2061722_30	UniRef90	UniRef90_R6T873	Major head protein	NA
UHGV-2061722_30	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-2061722_30	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2061722_30	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2061722_31	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2061722_31	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2061722_31	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-2061722_32	PHROG	phrog_3366	NA	unknown function
UHGV-2061722_32	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2061722_32	Pfam	PF20536	NA	DUF6751
UHGV-2061722_32	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2061722_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2061722_33	UniRef90	UniRef90_A0A1M7NJ72	Minor capsid protein	NA
UHGV-2061722_33	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2061722_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2061722_33	Structural annotation	PF11114	NA	NA
UHGV-2061722_34	PHROG	phrog_3266	tail completion	connector
UHGV-2061722_34	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-2061722_34	Structural annotation	PF20765	NA	NA
UHGV-2061722_35	PHROG	phrog_3099	NA	unknown function
UHGV-2061722_35	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2061722_35	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2061722_36	PHROG	phrog_11299	NA	unknown function
UHGV-2061722_36	Structural annotation	PF20378	NA	NA
UHGV-2061722_37	PHROG	phrog_706	NA	unknown function
UHGV-2061722_37	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-2061722_37	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-2061722_37	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2061722_37	Structural annotation	PF06854	NA	NA
UHGV-2061722_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2061722_38	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-2061722_38	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-2061722_38	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2061722_38	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2061722_39	PHROG	phrog_1194	NA	unknown function
UHGV-2061722_39	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-2061722_39	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2061722_40	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-2061722_40	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-2061722_40	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2061722_42	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-2061722_43	PHROG	phrog_26878	virion structural protein	head and packaging
UHGV-2061722_43	eggNOG-mapper	97138.C820_02500	lipolytic protein G-D-S-L family	NA
UHGV-2061722_43	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2061722_43	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2061722_45	PHROG	phrog_134	NA	unknown function
UHGV-2061722_45	UniRef90	UniRef90_A0A374HLL3	XkdX family protein	NA
UHGV-2061722_45	eggNOG-mapper	1298920.KI911353_gene543	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-2061722_45	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2061722_45	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2061722_46	PHROG	phrog_199	holin	lysis
UHGV-2061722_46	UniRef90	UniRef90_A0A373XMP0	Holin	NA
UHGV-2061722_46	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2061722_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2061722_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2061722_46	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2061722_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2061722_47	PHROG	phrog_297	holin	lysis
UHGV-2061722_47	UniRef90	UniRef90_A0A356CY82	Peptidase C51 domain-containing protein	NA
UHGV-2061722_47	eggNOG-mapper	1160721.RBI_II00521	hydrolase, family 25	NA
UHGV-2061722_47	Pfam	PF05257	CHAP domain	CHAP
UHGV-2061722_47	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2061722_47	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-2061722_48	PHROG	phrog_4962	NA	unknown function
UHGV-2061722_48	UniRef90	UniRef90_R6U470	FRG domain protein	NA
UHGV-2061722_48	eggNOG-mapper	706433.HMPREF9430_01842	FRG	NA
UHGV-2061722_48	Pfam	PF08867	FRG domain	FRG
UHGV-2061722_48	COG	COG4127	Predicted restriction endonuclease, Mrr-cat superfamily	NA
UHGV-2061722_49	UniRef90	UniRef90_UPI001C104DBD	bacteriophage abortive infection AbiH family protein	NA
UHGV-2061722_49	eggNOG-mapper	246199.CUS_4736	Bacteriophage abortive infection AbiH	NA
UHGV-2061722_49	Pfam	PF14253	Bacteriophage abortive infection AbiH	AbiH