UHGV-2061804

Genome information

Genome length 39,331 bps

CDS count 59

Completeness 95.21% (high-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-2061804
vOTU ID	vOTU-010699
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029377\|Ga0243903_1000093\|provirus_41259_89154
BioSample	SAMN05971615
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.21% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.68
Jumbo phage	No

Genome content
Genome length	39,331 bps
GC content	41.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.16%
Average CDS length	628.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2061804_1	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-2061804_1	eggNOG-mapper	411461.DORFOR_00722	NA	NA
UHGV-2061804_2	UniRef90	UniRef90_UPI0013B3ACC1	ABC transporter ATP-binding protein	NA
UHGV-2061804_2	eggNOG-mapper	1121895.Q765_12460	NA	NA
UHGV-2061804_2	Pfam	PF20712	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
UHGV-2061804_3	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-2061804_3	PHROG	phrog_9478	minor tail protein	tail
UHGV-2061804_3	UniRef90	UniRef90_UPI001C0193FC	phage tail protein	NA
UHGV-2061804_3	eggNOG-mapper	543734.LCABL_13420	cellulase activity	NA
UHGV-2061804_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2061804_3	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2061804_3	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-2061804_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2061804_3	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2061804_3	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2061804_4	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2061804_4	UniRef90	UniRef90_UPI00156D6BD7	phage tail family protein	NA
UHGV-2061804_4	eggNOG-mapper	1235796.C815_00909	Phage tail protein	NA
UHGV-2061804_4	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2061804_4	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2061804_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-2061804_4	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-2061804_5	PHROG	phrog_1204	tail protein	tail
UHGV-2061804_5	eggNOG-mapper	1232453.BAIF02000011_gene3367	phage tail tape measure protein	NA
UHGV-2061804_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2061804_6	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-2061804_6	UniRef90	UniRef90_UPI001896B0C6	tape measure protein	NA
UHGV-2061804_6	eggNOG-mapper	1232453.BAIF02000011_gene3367	phage tail tape measure protein	NA
UHGV-2061804_6	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2061804_6	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2061804_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2061804_7	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-2061804_7	UniRef90	UniRef90_F0YWR6	NA	NA
UHGV-2061804_7	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-2061804_8	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2061804_8	UniRef90	UniRef90_UPI001D067B55	tail assembly chaperone	NA
UHGV-2061804_8	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-2061804_8	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2061804_8	Structural annotation	PF12363	NA	NA
UHGV-2061804_9	PHROG	phrog_238	major tail protein	tail
UHGV-2061804_9	UniRef90	UniRef90_A0A173YN47	Phage major tail protein, TP901-1 family	NA
UHGV-2061804_9	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-2061804_9	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2061804_9	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2061804_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2061804_10	PHROG	phrog_176	tail terminator	connector
UHGV-2061804_10	UniRef90	UniRef90_UPI001D04E689	NA	NA
UHGV-2061804_10	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-2061804_10	Structural annotation	PF11367	NA	NA
UHGV-2061804_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2061804_11	UniRef90	UniRef90_UPI00111124B6	HK97 gp10 family phage protein	NA
UHGV-2061804_11	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2061804_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2061804_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2061804_11	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2061804_12	PHROG	phrog_348	minor head protein	head and packaging
UHGV-2061804_12	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-2061804_12	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2061804_13	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2061804_13	UniRef90	UniRef90_A0A173ZES1	Phage gp6-like head-tail connector protein	NA
UHGV-2061804_13	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-2061804_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2061804_13	Structural annotation	PF05135	NA	NA
UHGV-2061804_14	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-2061804_14	UniRef90	UniRef90_UPI00189C3058	Rho termination protein	NA
UHGV-2061804_14	eggNOG-mapper	279808.SH2353	Rho termination factor, N-terminal domain	NA
UHGV-2061804_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-2061804_15	UniRef90	UniRef90_A0A173ZE35	S-l_SbsC_C domain-containing protein	NA
UHGV-2061804_15	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-2061804_15	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2061804_15	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2061804_16	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2061804_16	UniRef90	UniRef90_UPI001D0541EB	NA	NA
UHGV-2061804_16	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-2061804_16	Pfam	PF14265	NA	DUF4355
UHGV-2061804_16	Structural annotation	PF14265	NA	NA
UHGV-2061804_17	KOfam	K07584	NA	NA
UHGV-2061804_17	PHROG	phrog_4478	peptidase	other
UHGV-2061804_17	UniRef90	UniRef90_UPI00156DEF22	ribosomal-processing cysteine protease Prp	NA
UHGV-2061804_17	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-2061804_17	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2061804_17	COG	COG2868	NA	NA
UHGV-2061804_17	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2061804_18	PHROG	phrog_1233	NA	unknown function
UHGV-2061804_18	eggNOG-mapper	1232453.BAIF02000011_gene3355	NA	NA
UHGV-2061804_19	PHROG	phrog_3675	NA	unknown function
UHGV-2061804_19	UniRef90	UniRef90_UPI001C027742	YjcQ family protein	NA
UHGV-2061804_19	eggNOG-mapper	1118055.CAGU01000029_gene13	YjcQ protein	NA
UHGV-2061804_19	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-2061804_19	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-2061804_22	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2061804_22	UniRef90	UniRef90_UPI00111156C2	minor capsid protein	NA
UHGV-2061804_22	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2061804_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2061804_22	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2061804_22	COG	COG2369	NA	NA
UHGV-2061804_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-2061804_23	UniRef90	UniRef90_UPI001A9B67CD	phage portal protein	NA
UHGV-2061804_23	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-2061804_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2061804_23	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2061804_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2061804_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2061804_24	PHROG	phrog_10250	NA	unknown function
UHGV-2061804_24	UniRef90	UniRef90_UPI001C023397	PBSX family phage terminase large subunit	NA
UHGV-2061804_24	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-2061804_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2061804_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2061804_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-2061804_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2061804_25	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-2061804_25	UniRef90	UniRef90_UPI001C027893	phage terminase small subunit	NA
UHGV-2061804_25	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-2061804_25	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2061804_25	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2061804_25	COG	COG5484	NA	NA
UHGV-2061804_25	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-2061804_26	PHROG	phrog_11237	NA	unknown function
UHGV-2061804_26	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-2061804_27	PHROG	phrog_6568	NA	unknown function
UHGV-2061804_32	Structural annotation	PF10400	NA	NA
UHGV-2061804_35	UniRef90	UniRef90_UPI00129E4C6A	NA	NA
UHGV-2061804_36	PHROG	phrog_7566	NA	unknown function
UHGV-2061804_36	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-2061804_37	PHROG	phrog_15077	NA	unknown function
UHGV-2061804_37	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-2061804_37	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-2061804_38	PHROG	phrog_8470	NA	unknown function
UHGV-2061804_38	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-2061804_38	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-2061804_38	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2061804_38	Structural annotation	PF14284	NA	NA
UHGV-2061804_39	PHROG	phrog_4433	NA	unknown function
UHGV-2061804_39	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-2061804_39	Structural annotation	PF12120, NF000318	NA	NA
UHGV-2061804_40	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-2061804_41	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2061804_41	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2061804_41	UniRef90	UniRef90_A0A6N9JSQ7	RNase H type-1 domain-containing protein	NA
UHGV-2061804_41	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-2061804_41	Pfam	PF00075	RNase H	RNase_H
UHGV-2061804_41	COG	COG0328	Ribonuclease HI	NA
UHGV-2061804_41	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2061804_43	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2061804_43	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-2061804_43	Structural annotation	PF01446	NA	NA
UHGV-2061804_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2061804_49	UniRef90	UniRef90_A0A173VG88	Helix-turn-helix domain	NA
UHGV-2061804_49	eggNOG-mapper	552396.HMPREF0863_02446	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2061804_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2061804_49	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-2061804_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2061804_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2061804_50	UniRef90	UniRef90_A0A173VG78	Helix-turn-helix domain-containing protein	NA
UHGV-2061804_50	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2061804_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2061804_50	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2061804_50	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2061804_51	PHROG	phrog_20886	NA	unknown function
UHGV-2061804_51	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2061804_51	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-2061804_51	Structural annotation	PF06114	NA	NA
UHGV-2061804_52	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-2061804_52	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2061804_52	UniRef90	UniRef90_A0A173VG58	Endonuclease	NA
UHGV-2061804_52	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-2061804_52	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-2061804_52	COG	COG4748	NA	NA
UHGV-2061804_52	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-2061804_53	PHROG	phrog_9418	NA	unknown function
UHGV-2061804_53	eggNOG-mapper	411462.DORLON_00822	NA	NA
UHGV-2061804_53	Structural annotation	PF10233	NA	NA
UHGV-2061804_54	PHROG	phrog_10226	NA	unknown function
UHGV-2061804_54	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-2061804_54	Structural annotation	COG4127	NA	NA
UHGV-2061804_56	PHROG	phrog_16228	NA	unknown function
UHGV-2061804_56	UniRef90	UniRef90_A0A173VH75	Uma2 family endonuclease	NA
UHGV-2061804_56	eggNOG-mapper	742765.HMPREF9457_02091	Putative restriction endonuclease	NA
UHGV-2061804_56	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-2061804_56	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-2061804_56	Structural annotation	PF05685, COG4636	NA	NA
UHGV-2061804_57	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2061804_57	PHROG	phrog_95	integrase	integration and excision
UHGV-2061804_57	UniRef90	UniRef90_A6BEV3	Resolvase, N-terminal domain protein	NA
UHGV-2061804_57	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-2061804_57	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2061804_57	Pfam	PF07508	Recombinase	Recombinase
UHGV-2061804_57	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2061804_57	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2061804_57	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-2061804_58	PHROG	phrog_23452	NA	unknown function
UHGV-2061804_58	UniRef90	UniRef90_A0A174JNC4	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-2061804_58	eggNOG-mapper	1280698.AUJS01000010_gene819	Putative peptidoglycan binding domain	NA
UHGV-2061804_58	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2061804_58	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2061804_58	Structural annotation	PF01471, COG3409	NA	NA
UHGV-2061804_59	PHROG	phrog_443	holin	lysis
UHGV-2061804_59	UniRef90	UniRef90_UPI001F16E4E6	holin	NA
UHGV-2061804_59	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-2061804_59	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2061804_59	Structural annotation	PF16945	NA	NA