UHGV-2062162

Genome information

Genome length 43,041 bps

CDS count 62

Completeness 96.51% (high-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-2062162
vOTU ID	vOTU-068634
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029393\|Ga0243986_1000425\|provirus_8106_51146
BioSample	SAMN05971698
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.51% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.49
Jumbo phage	No

Genome content
Genome length	43,041 bps
GC content	39.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	89.92%
Average CDS length	627.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2062162_1	KOfam	K14059	int; integrase	NA
UHGV-2062162_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2062162_1	UniRef90	UniRef90_UPI000B1B52E6	tyrosine-type recombinase/integrase	NA
UHGV-2062162_1	eggNOG-mapper	1111454.HMPREF1250_0778	Belongs to the 'phage' integrase family	NA
UHGV-2062162_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2062162_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2062162_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2062162_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2062162_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2062162_2	UniRef90	UniRef90_UPI000987C3DA	XRE family transcriptional regulator	NA
UHGV-2062162_2	eggNOG-mapper	1111134.HMPREF1253_1209	Peptidase S24-like	NA
UHGV-2062162_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2062162_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2062162_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2062162_2	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2062162_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2062162_3	UniRef90	UniRef90_E0NXN1	DNA-binding helix-turn-helix protein	NA
UHGV-2062162_3	eggNOG-mapper	864563.HMPREF9166_0598	DNA-binding helix-turn-helix protein	NA
UHGV-2062162_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2062162_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2062162_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2062162_4	PHROG	phrog_6058	NA	unknown function
UHGV-2062162_4	UniRef90	UniRef90_A0A101WT85	Modification methylase SinI	NA
UHGV-2062162_4	eggNOG-mapper	1238184.CM001792_gene70	NA	NA
UHGV-2062162_8	PHROG	phrog_1090	NA	unknown function
UHGV-2062162_8	UniRef90	UniRef90_UPI001F4D796E	SinR family protein	NA
UHGV-2062162_8	eggNOG-mapper	1163617.SCD_n00121	NA	NA
UHGV-2062162_8	Structural annotation	PF09827, MF_01471, TIGR01573, COG1343	NA	NA
UHGV-2062162_9	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2062162_9	UniRef90	UniRef90_A0A412X6A8	XRE family transcriptional regulator	NA
UHGV-2062162_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2062162_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2062162_11	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2062162_11	UniRef90	UniRef90_UPI001032CF2B	ERF family protein	NA
UHGV-2062162_11	eggNOG-mapper	1205680.CAKO01000006_gene3229	ERF superfamily	NA
UHGV-2062162_11	Pfam	PF04404	ERF superfamily	ERF
UHGV-2062162_11	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2062162_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2062162_12	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2062162_12	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-2062162_12	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2062162_13	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2062162_13	UniRef90	UniRef90_UPI0015D10FB3	helix-turn-helix domain-containing protein	NA
UHGV-2062162_13	eggNOG-mapper	1449126.JQKL01000003_gene1705	ROK family	NA
UHGV-2062162_13	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-2062162_15	PHROG	phrog_7964	NA	unknown function
UHGV-2062162_15	UniRef90	UniRef90_UPI00103291C8	polymer-forming cytoskeletal protein	NA
UHGV-2062162_15	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-2062162_15	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-2062162_15	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-2062162_15	Structural annotation	MF_01691, NF040481, COG2171	NA	NA
UHGV-2062162_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2062162_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2062162_16	UniRef90	UniRef90_UPI001EDE1E69	DNA cytosine methyltransferase	NA
UHGV-2062162_16	eggNOG-mapper	1123288.SOV_2c03860	C-5 cytosine-specific DNA methylase	NA
UHGV-2062162_16	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2062162_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2062162_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2062162_16	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2062162_17	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2062162_17	UniRef90	UniRef90_UPI001EE0FE88	radical SAM protein	NA
UHGV-2062162_17	eggNOG-mapper	1235800.C819_00846	NA	NA
UHGV-2062162_17	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2062162_17	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-2062162_19	PHROG	phrog_17519	NA	unknown function
UHGV-2062162_19	UniRef90	UniRef90_UPI001EE0A8D7	NA	NA
UHGV-2062162_19	eggNOG-mapper	827.JFJK01000019_gene61	NA	NA
UHGV-2062162_19	Pfam	PF12083	NA	DUF3560
UHGV-2062162_19	Structural annotation	PF12083	NA	NA
UHGV-2062162_21	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2062162_21	UniRef90	UniRef90_UPI001EDF6C09	Lar family restriction alleviation protein	NA
UHGV-2062162_21	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2062162_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2062162_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2062162_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2062162_27	UniRef90	UniRef90_UPI00036DE524	terminase small subunit	NA
UHGV-2062162_27	eggNOG-mapper	1120978.KB894087_gene429	Terminase small subunit	NA
UHGV-2062162_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2062162_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2062162_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2062162_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2062162_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2062162_28	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-2062162_28	eggNOG-mapper	585503.HMPREF7545_1731	Terminase-like family	NA
UHGV-2062162_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2062162_28	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-2062162_28	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-2062162_30	PHROG	phrog_332	head-tail adaptor	connector
UHGV-2062162_30	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-2062162_30	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-2062162_30	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-2062162_30	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-2062162_31	PHROG	phrog_528	NA	unknown function
UHGV-2062162_31	UniRef90	UniRef90_A0A2D6RTY3	Endopeptidase	NA
UHGV-2062162_31	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-2062162_32	PHROG	phrog_458	protease	other
UHGV-2062162_32	eggNOG-mapper	1401067.HMPREF0872_06800	NA	NA
UHGV-2062162_33	PHROG	phrog_212	major head protein	head and packaging
UHGV-2062162_33	UniRef90	UniRef90_A0A077DE24	NA	NA
UHGV-2062162_33	eggNOG-mapper	699218.HMPREF0889_0284	NA	NA
UHGV-2062162_33	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-2062162_33	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2062162_34	UniRef90	UniRef90_A0A841R587	Proline racemase	NA
UHGV-2062162_34	Structural annotation	PF21190	NA	NA
UHGV-2062162_35	Structural annotation	PF12949	NA	NA
UHGV-2062162_36	PHROG	phrog_394	tail protein	tail
UHGV-2062162_36	UniRef90	UniRef90_A0A8B2QU77	Tail tube protein	NA
UHGV-2062162_36	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-2062162_37	PHROG	phrog_376	tail protein	tail
UHGV-2062162_37	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-2062162_37	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-2062162_37	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-2062162_37	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-2062162_38	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-2062162_38	UniRef90	UniRef90_A0A7X2XHB5	NA	NA
UHGV-2062162_38	eggNOG-mapper	202954.BBNK01000010_gene1461	NA	NA
UHGV-2062162_38	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-2062162_38	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-2062162_39	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-2062162_39	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-2062162_39	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-2062162_40	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2062162_40	PHROG	phrog_1044	endolysin	lysis
UHGV-2062162_40	UniRef90	UniRef90_UPI001032FD1D	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-2062162_40	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2062162_40	COG	COG3108	NA	NA
UHGV-2062162_41	PHROG	phrog_9854	NA	unknown function
UHGV-2062162_41	UniRef90	UniRef90_A0A259UTX8	LPD38 domain-containing protein	NA
UHGV-2062162_41	eggNOG-mapper	401526.TcarDRAFT_1293	protein secretion by the type IV secretion system	NA
UHGV-2062162_41	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-2062162_41	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-2062162_41	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-2062162_43	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2062162_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2062162_43	UniRef90	UniRef90_A0A412X6X2	XRE family transcriptional regulator	NA
UHGV-2062162_43	eggNOG-mapper	340099.Teth39_0032	PFAM helix-turn-helix domain protein	NA
UHGV-2062162_43	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2062162_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2062162_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2062162_45	PHROG	phrog_7940	NA	unknown function
UHGV-2062162_45	UniRef90	UniRef90_A0A412X6G4	Toxin Bro	NA
UHGV-2062162_45	eggNOG-mapper	546271.Selsp_1341	BRO family, N-terminal domain	NA
UHGV-2062162_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2062162_45	COG	COG3617	Prophage antirepressor	NA
UHGV-2062162_45	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-2062162_48	PHROG	phrog_1640	tail protein	tail
UHGV-2062162_48	eggNOG-mapper	1322246.BN4_12406	Belongs to the glycosyl hydrolase 28 family	NA
UHGV-2062162_48	COG	COG5434	Polygalacturonase	NA
UHGV-2062162_49	PHROG	phrog_4757	NA	unknown function
UHGV-2062162_49	eggNOG-mapper	1273103.NM10_08089	tail collar domain protein	NA
UHGV-2062162_49	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-2062162_49	COG	COG4675	Phage tail collar domain	NA
UHGV-2062162_51	PHROG	phrog_1348	tail fiber protein	tail
UHGV-2062162_51	UniRef90	UniRef90_C1DBJ8	NA	NA
UHGV-2062162_51	eggNOG-mapper	1157490.EL26_01675	NA	NA
UHGV-2062162_51	Structural annotation	PF14301	NA	NA
UHGV-2062162_52	PHROG	phrog_1009	NA	unknown function
UHGV-2062162_53	eggNOG-mapper	568816.Acin_1216	NA	NA
UHGV-2062162_54	PHROG	phrog_5867	endolysin	lysis
UHGV-2062162_54	UniRef90	UniRef90_A0A7X2XH64	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2062162_54	eggNOG-mapper	1262914.BN533_02021	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2062162_54	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2062162_54	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2062162_54	Structural annotation	MF_04111	NA	NA
UHGV-2062162_57	UniRef90	UniRef90_A0A412X6W3	Sigma70_r4_2 domain-containing protein	NA
UHGV-2062162_57	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2062162_57	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2062162_57	Structural annotation	PF08281, MF_00245, NF001075, COG2739	NA	NA
UHGV-2062162_60	PHROG	phrog_16490	NA	unknown function
UHGV-2062162_60	eggNOG-mapper	476272.RUMHYD_01954	NA	NA
UHGV-2062162_61	eggNOG-mapper	397290.C810_01330	NA	NA
UHGV-2062162_62	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-2062162_62	eggNOG-mapper	1378168.N510_03079	NA	NA