UHGV-2062327

Genome information

Genome length 31,878 bps

CDS count 45

Completeness 84.08% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-2062327
vOTU ID	vOTU-041676
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029370\|Ga0243957_100075\|provirus_71023_108410
BioSample	SAMN05971669
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.23
Jumbo phage	No

Genome content
Genome length	31,878 bps
GC content	42.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.93%
Average CDS length	670.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2062327_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2062327_1	UniRef90	UniRef90_UPI001E32C9FE	helix-turn-helix domain-containing protein	NA
UHGV-2062327_1	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2062327_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2062327_1	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-2062327_2	Structural annotation	PF10743, NF040990, COG3311	NA	NA
UHGV-2062327_4	UniRef90	UniRef90_A0A894KJ06	Type II secretory pathway component PulF-like protein	NA
UHGV-2062327_6	PHROG	phrog_22695	NA	unknown function
UHGV-2062327_6	eggNOG-mapper	1235799.C818_04196	NA	NA
UHGV-2062327_7	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-2062327_7	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2062327_7	UniRef90	UniRef90_UPI0008D9B927	NA	NA
UHGV-2062327_7	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-2062327_7	Pfam	PF10926	NA	DUF2800
UHGV-2062327_7	COG	COG2887	RecB family exonuclease	NA
UHGV-2062327_7	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2062327_8	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2062327_8	UniRef90	UniRef90_UPI0009F72FD0	NA	NA
UHGV-2062327_8	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-2062327_8	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2062327_8	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2062327_9	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2062327_9	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2062327_9	UniRef90	UniRef90_UPI0008D9256B	DNA polymerase	NA
UHGV-2062327_9	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-2062327_9	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2062327_9	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2062327_9	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2062327_10	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2062327_10	UniRef90	UniRef90_UPI0008D977D3	virulence-associated E family protein	NA
UHGV-2062327_10	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-2062327_10	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2062327_10	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2062327_10	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-2062327_11	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2062327_11	UniRef90	UniRef90_UPI0008DA87C1	VRR-NUC domain-containing protein	NA
UHGV-2062327_11	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-2062327_11	Structural annotation	PF01870, MF_01490, NF002585, COG1591	NA	NA
UHGV-2062327_12	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2062327_12	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2062327_12	UniRef90	UniRef90_UPI0009F1D145	DEAD/DEAH box helicase	NA
UHGV-2062327_12	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-2062327_12	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2062327_12	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2062327_12	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2062327_12	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2062327_12	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2062327_15	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-2062327_15	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-2062327_15	UniRef90	UniRef90_A0A3E2WWC7	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2062327_15	eggNOG-mapper	1382304.JNIL01000001_gene3183	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-2062327_15	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-2062327_15	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2062327_15	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2062327_15	Structural annotation	PF04542, PF08281, MF_00962, NF006158, COG1191	NA	NA
UHGV-2062327_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2062327_17	UniRef90	UniRef90_A0A3A5TMG5	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2062327_17	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-2062327_17	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2062327_17	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-2062327_18	UniRef90	UniRef90_UPI0013C32EB3	propionyl-CoA synthetase	NA
UHGV-2062327_18	eggNOG-mapper	1224318.DT73_00410	NA	NA
UHGV-2062327_19	eggNOG-mapper	553973.CLOHYLEM_05570	NA	NA
UHGV-2062327_20	PHROG	phrog_2412	NA	unknown function
UHGV-2062327_20	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-2062327_20	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-2062327_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2062327_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2062327_21	UniRef90	UniRef90_UPI0013563028	PBSX family phage terminase large subunit	NA
UHGV-2062327_21	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-2062327_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2062327_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2062327_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-2062327_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2062327_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-2062327_22	UniRef90	UniRef90_UPI000C79119B	phage portal protein	NA
UHGV-2062327_22	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-2062327_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2062327_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2062327_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2062327_23	UniRef90	UniRef90_UPI000C7906A1	phage minor capsid protein	NA
UHGV-2062327_23	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-2062327_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2062327_23	COG	COG2369	NA	NA
UHGV-2062327_23	Structural annotation	PF06152	NA	NA
UHGV-2062327_24	PHROG	phrog_27009	NA	unknown function
UHGV-2062327_25	PHROG	phrog_1233	NA	unknown function
UHGV-2062327_25	UniRef90	UniRef90_A0A855HLY8	Peptidase_M78 domain-containing protein	NA
UHGV-2062327_25	eggNOG-mapper	476272.RUMHYD_02850	NA	NA
UHGV-2062327_25	Structural annotation	PF06114	NA	NA
UHGV-2062327_26	KOfam	K07584	NA	NA
UHGV-2062327_26	PHROG	phrog_4478	peptidase	other
UHGV-2062327_26	UniRef90	UniRef90_A0A3E4ME95	Ribosomal-processing cysteine protease Prp	NA
UHGV-2062327_26	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-2062327_26	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2062327_26	COG	COG2868	NA	NA
UHGV-2062327_26	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2062327_27	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2062327_27	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-2062327_28	PHROG	phrog_267	major head protein	head and packaging
UHGV-2062327_28	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-2062327_28	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-2062327_28	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2062327_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2062327_29	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-2062327_29	eggNOG-mapper	997296.PB1_16199	NA	NA
UHGV-2062327_30	PHROG	phrog_793	head-tail adaptor	connector
UHGV-2062327_30	UniRef90	UniRef90_UPI000C77160F	putative minor capsid protein	NA
UHGV-2062327_30	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-2062327_30	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2062327_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2062327_31	UniRef90	UniRef90_UPI000C7679F4	minor capsid protein	NA
UHGV-2062327_31	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2062327_31	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-2062327_32	PHROG	phrog_913	minor head protein	head and packaging
UHGV-2062327_32	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-2062327_32	Structural annotation	PF12691	NA	NA
UHGV-2062327_33	PHROG	phrog_820	major tail protein	tail
UHGV-2062327_33	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-2062327_33	eggNOG-mapper	1231057.AMGD01000018_gene3613	Belongs to the glycosyl hydrolase family 6	NA
UHGV-2062327_33	COG	COG5492	NA	NA
UHGV-2062327_33	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2062327_34	Structural annotation	PF10666	NA	NA
UHGV-2062327_35	PHROG	phrog_706	NA	unknown function
UHGV-2062327_35	UniRef90	UniRef90_UPI000C78ADA7	Gp15 family bacteriophage protein	NA
UHGV-2062327_35	eggNOG-mapper	1134413.ANNK01000120_gene2016	Bacteriophage Gp15 protein	NA
UHGV-2062327_35	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2062327_35	Structural annotation	PF06854	NA	NA
UHGV-2062327_36	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2062327_36	UniRef90	UniRef90_UPI000C7738DA	phage tail tape measure protein	NA
UHGV-2062327_36	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-2062327_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2062327_36	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2062327_36	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2062327_37	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-2062327_37	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2062327_38	PHROG	phrog_538	minor tail protein	tail
UHGV-2062327_38	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2062327_38	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-2062327_38	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2062327_38	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2062327_39	PHROG	phrog_9994	NA	unknown function
UHGV-2062327_39	UniRef90	UniRef90_UPI000C7605CE	H-type lectin domain-containing protein	NA
UHGV-2062327_39	eggNOG-mapper	411468.CLOSCI_00275	NA	NA
UHGV-2062327_39	Structural annotation	PF20747, PF16990	NA	NA
UHGV-2062327_40	PHROG	phrog_19695	NA	unknown function
UHGV-2062327_40	eggNOG-mapper	476272.RUMHYD_01995	NA	NA
UHGV-2062327_42	PHROG	phrog_1382	NA	unknown function
UHGV-2062327_42	eggNOG-mapper	411461.DORFOR_00727	NA	NA
UHGV-2062327_43	UniRef90	UniRef90_A0A3R6SMZ1	CTP synthase	NA
UHGV-2062327_43	eggNOG-mapper	411490.ANACAC_00599	NA	NA
UHGV-2062327_44	PHROG	phrog_18218	NA	unknown function
UHGV-2062327_44	UniRef90	UniRef90_A0A3D0FFR6	Ribonuclease	NA
UHGV-2062327_44	eggNOG-mapper	1232452.BAIB02000002_gene50	NA	NA
UHGV-2062327_44	Structural annotation	PF06946	NA	NA
UHGV-2062327_45	PHROG	phrog_1048	NA	unknown function
UHGV-2062327_45	UniRef90	UniRef90_A0A417CPJ8	NA	NA
UHGV-2062327_45	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-2062327_45	Pfam	PF11195	NA	DUF2829
UHGV-2062327_45	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2062327_45	Structural annotation	PF11195	NA	NA