UHGV-2062812

Genome information

Genome length 43,005 bps

CDS count 72

Completeness 82.28% (medium-quality)

geNomad score 0.9700

Prediction confidence Confident

Genome information
Genome ID	UHGV-2062812
vOTU ID	vOTU-015016
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029389\|Ga0243995_1000241\|provirus_9850_57205
BioSample	SAMN05971707
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9700
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.01
Jumbo phage	No

Genome content
Genome length	43,005 bps
GC content	44.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	91.13%
Average CDS length	546.42 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2062812_1	PHROG	phrog_7854	endolysin	lysis
UHGV-2062812_1	UniRef90	UniRef90_A0A3R6UY66	NA	NA
UHGV-2062812_1	eggNOG-mapper	1304866.K413DRAFT_4757	cell wall binding	NA
UHGV-2062812_1	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-2062812_1	Pfam	PF16729	NA	DUF5067
UHGV-2062812_1	Structural annotation	PF11611, PF19127	NA	NA
UHGV-2062812_2	UniRef90	UniRef90_UPI00156FB8DD	NA	NA
UHGV-2062812_2	eggNOG-mapper	457412.RSAG_01052	NA	NA
UHGV-2062812_2	Pfam	PF13711	NA	DUF4160
UHGV-2062812_3	eggNOG-mapper	457412.RSAG_01053	NA	NA
UHGV-2062812_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2062812_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2062812_4	UniRef90	UniRef90_UPI0004871D3A	helix-turn-helix domain-containing protein	NA
UHGV-2062812_4	eggNOG-mapper	1211844.CBLM010000016_gene1522	Peptidase S24-like	NA
UHGV-2062812_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2062812_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2062812_4	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2062812_4	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-2062812_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2062812_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2062812_5	UniRef90	UniRef90_UPI0011851DB5	helix-turn-helix domain-containing protein	NA
UHGV-2062812_5	eggNOG-mapper	1211844.CBLM010000016_gene1521	Helix-turn-helix XRE-family like proteins	NA
UHGV-2062812_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2062812_5	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2062812_6	PHROG	phrog_5765	NA	unknown function
UHGV-2062812_6	UniRef90	UniRef90_A0A416JYS5	BC1881 family protein	NA
UHGV-2062812_6	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-2062812_6	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-2062812_7	PHROG	phrog_3292	NA	unknown function
UHGV-2062812_7	UniRef90	UniRef90_UPI0011848628	KTSC domain-containing protein	NA
UHGV-2062812_7	eggNOG-mapper	477974.Daud_0504	Belongs to the class-II aminoacyl-tRNA synthetase family	NA
UHGV-2062812_7	Pfam	PF13619	KTSC domain	KTSC
UHGV-2062812_7	COG	COG1190	Lysyl-tRNA synthetase (class II)	NA
UHGV-2062812_7	Structural annotation	PF13619	NA	NA
UHGV-2062812_8	UniRef90	UniRef90_UPI001C029153	helix-turn-helix transcriptional regulator	NA
UHGV-2062812_8	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-2062812_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2062812_8	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2062812_10	PHROG	phrog_32192	NA	unknown function
UHGV-2062812_13	PHROG	phrog_3777	NA	unknown function
UHGV-2062812_13	UniRef90	UniRef90_A0A3R6RW84	NA	NA
UHGV-2062812_13	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-2062812_13	Pfam	PF12957	NA	DUF3846
UHGV-2062812_13	Structural annotation	PF12957	NA	NA
UHGV-2062812_16	UniRef90	UniRef90_UPI0015937D0E	phosphatase	NA
UHGV-2062812_16	Structural annotation	PF11302, MF_00085, NF003076, COG0231	NA	NA
UHGV-2062812_17	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2062812_17	UniRef90	UniRef90_A0A3E2V5A6	ATP-binding protein	NA
UHGV-2062812_17	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-2062812_17	Pfam	PF13479	AAA domain	AAA_24
UHGV-2062812_17	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2062812_18	PHROG	phrog_18107	NA	unknown function
UHGV-2062812_18	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-2062812_18	Structural annotation	PF05037	NA	NA
UHGV-2062812_19	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2062812_19	UniRef90	UniRef90_A0A173R9N6	ERCC4 domain-containing protein	NA
UHGV-2062812_19	eggNOG-mapper	476272.RUMHYD_02832	ERCC4 domain	NA
UHGV-2062812_19	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2062812_19	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-2062812_19	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-2062812_21	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2062812_21	UniRef90	UniRef90_UPI00190F4DCA	DnaD domain protein	NA
UHGV-2062812_21	eggNOG-mapper	646529.Desaci_3039	Transcriptional regulator	NA
UHGV-2062812_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2062812_22	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-2062812_22	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2062812_22	UniRef90	UniRef90_A0A3E2V556	SF4 helicase domain-containing protein	NA
UHGV-2062812_22	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-2062812_22	Pfam	PF06745	KaiC	ATPase
UHGV-2062812_22	COG	COG0305	Replicative DNA helicase	NA
UHGV-2062812_22	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-2062812_24	Structural annotation	PF01246, MF_00773, NF041909, COG2075	NA	NA
UHGV-2062812_25	UniRef90	UniRef90_A0A416B805	Winged helix-turn-helix transcriptional regulator	NA
UHGV-2062812_25	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2062812_26	eggNOG-mapper	411468.CLOSCI_00572	NA	NA
UHGV-2062812_31	PHROG	phrog_16126	NA	unknown function
UHGV-2062812_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2062812_32	UniRef90	UniRef90_A0A417C341	RNA polymerase subunit sigma-70	NA
UHGV-2062812_32	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-2062812_32	Structural annotation	PF02996	NA	NA
UHGV-2062812_34	PHROG	phrog_1281	NA	unknown function
UHGV-2062812_34	UniRef90	UniRef90_UPI001D064CB7	NA	NA
UHGV-2062812_34	eggNOG-mapper	1508644.SFBmNL_01513	NA	NA
UHGV-2062812_34	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-2062812_34	COG	COG3600	NA	NA
UHGV-2062812_34	Structural annotation	PF13274, COG3600	NA	NA
UHGV-2062812_35	PHROG	phrog_5763	NA	unknown function
UHGV-2062812_35	eggNOG-mapper	742740.HMPREF9474_04284	NA	NA
UHGV-2062812_36	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-2062812_36	UniRef90	UniRef90_R5J299	Phage terminase small subunit	NA
UHGV-2062812_36	eggNOG-mapper	1235798.C817_03483	DNA packaging	NA
UHGV-2062812_36	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2062812_36	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2062812_36	COG	COG5484	NA	NA
UHGV-2062812_36	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-2062812_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2062812_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2062812_37	UniRef90	UniRef90_UPI00189D702D	PBSX family phage terminase large subunit	NA
UHGV-2062812_37	eggNOG-mapper	610130.Closa_1390	Terminase RNAseH like domain	NA
UHGV-2062812_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2062812_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2062812_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2062812_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-2062812_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2062812_39	PHROG	phrog_64	portal protein	head and packaging
UHGV-2062812_39	UniRef90	UniRef90_UPI00164E78B1	phage portal protein	NA
UHGV-2062812_39	eggNOG-mapper	887325.HMPREF0381_0085	Phage portal protein, SPP1 family	NA
UHGV-2062812_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2062812_39	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2062812_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2062812_40	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2062812_40	UniRef90	UniRef90_A0A2K2TW69	Phage_Mu_F domain-containing protein	NA
UHGV-2062812_40	eggNOG-mapper	887325.HMPREF0381_0084	Phage Mu protein F like protein	NA
UHGV-2062812_40	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2062812_40	COG	COG2369	NA	NA
UHGV-2062812_43	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2062812_43	UniRef90	UniRef90_UPI0018A0A733	NA	NA
UHGV-2062812_43	eggNOG-mapper	1540257.JQMW01000013_gene743	NA	NA
UHGV-2062812_43	Pfam	PF14265	NA	DUF4355
UHGV-2062812_43	Structural annotation	PF14265	NA	NA
UHGV-2062812_44	PHROG	phrog_247	major head protein	head and packaging
UHGV-2062812_44	UniRef90	UniRef90_A0A2K2TVU1	Coat protein	NA
UHGV-2062812_44	eggNOG-mapper	887325.HMPREF0381_0081	NA	NA
UHGV-2062812_44	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-2062812_44	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-2062812_46	PHROG	phrog_222	tail protein	tail
UHGV-2062812_46	UniRef90	UniRef90_A0A2D1GQ83	Putative morphogenesis protein	NA
UHGV-2062812_46	eggNOG-mapper	1307436.PBF_04365	NA	NA
UHGV-2062812_47	PHROG	phrog_1661	NA	unknown function
UHGV-2062812_47	eggNOG-mapper	1484479.DI14_04750	NA	NA
UHGV-2062812_47	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2062812_48	PHROG	phrog_1232	NA	unknown function
UHGV-2062812_48	eggNOG-mapper	1121091.AUMP01000032_gene3104	NA	NA
UHGV-2062812_48	Structural annotation	PF08873	NA	NA
UHGV-2062812_49	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-2062812_49	UniRef90	UniRef90_UPI00189D3BF5	NA	NA
UHGV-2062812_49	eggNOG-mapper	887325.HMPREF0381_0075	NA	NA
UHGV-2062812_49	Pfam	PF11863	NA	DUF3383
UHGV-2062812_49	Structural annotation	PF11863, COG3497	NA	NA
UHGV-2062812_50	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-2062812_50	UniRef90	UniRef90_UPI00164E523E	NA	NA
UHGV-2062812_50	eggNOG-mapper	1395513.P343_07935	NA	NA
UHGV-2062812_50	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-2062812_50	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-2062812_51	Structural annotation	PF16462	NA	NA
UHGV-2062812_52	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2062812_52	UniRef90	UniRef90_A0A2K2TWH5	Phage tail tape measure protein	NA
UHGV-2062812_52	eggNOG-mapper	478749.BRYFOR_07547	Phage tail tape measure protein, TP901 family	NA
UHGV-2062812_52	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2062812_52	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2062812_52	COG	COG5283	Phage-related tail protein	NA
UHGV-2062812_53	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2062812_53	PHROG	phrog_380	endolysin	lysis
UHGV-2062812_53	UniRef90	UniRef90_UPI001A9B7B58	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2062812_53	eggNOG-mapper	887325.HMPREF0381_0071	positive regulation of growth rate	NA
UHGV-2062812_53	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-2062812_53	Pfam	PF01476	LysM domain	LysM
UHGV-2062812_53	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2062812_53	Structural annotation	PF19512, PF01476, TIGR02899, TIGR01633, COG1388, COG4718	NA	NA
UHGV-2062812_54	PHROG	phrog_1264	NA	unknown function
UHGV-2062812_54	eggNOG-mapper	1230341.MJ3_13674	NA	NA
UHGV-2062812_55	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-2062812_55	eggNOG-mapper	887325.HMPREF0381_0069	NA	NA
UHGV-2062812_55	Pfam	PF12200	NA	DUF3597
UHGV-2062812_56	Structural annotation	PF18352	NA	NA
UHGV-2062812_57	PHROG	phrog_120	baseplate protein	tail
UHGV-2062812_57	UniRef90	UniRef90_K4Z9V1	Phage baseplate assembly protein W	NA
UHGV-2062812_57	eggNOG-mapper	330397.A8ATI1_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-2062812_57	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-2062812_58	PHROG	phrog_6	baseplate protein	tail
UHGV-2062812_58	UniRef90	UniRef90_A0A2K2TVT0	Baseplate_J domain-containing protein	NA
UHGV-2062812_58	eggNOG-mapper	887325.HMPREF0381_0066	Baseplate J-like protein	NA
UHGV-2062812_58	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2062812_58	COG	COG3299	NA	NA
UHGV-2062812_58	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2062812_59	PHROG	phrog_1160	baseplate protein	tail
UHGV-2062812_59	UniRef90	UniRef90_UPI00164D3EAA	NA	NA
UHGV-2062812_59	eggNOG-mapper	1501230.ET33_21310	NA	NA
UHGV-2062812_59	Pfam	PF11041	NA	DUF2612
UHGV-2062812_59	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-2062812_60	PHROG	phrog_2126	tail fiber protein	tail
UHGV-2062812_60	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-2062812_61	eggNOG-mapper	742740.HMPREF9474_03519	ATPase involved in DNA repair	NA
UHGV-2062812_61	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2062812_64	PHROG	phrog_1382	NA	unknown function
UHGV-2062812_64	UniRef90	UniRef90_A0A3E2UAD4	ASCH domain-containing protein	NA
UHGV-2062812_64	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2062812_64	Structural annotation	NF040910	NA	NA
UHGV-2062812_65	PHROG	phrog_1382	NA	unknown function
UHGV-2062812_65	eggNOG-mapper	411902.CLOBOL_00118	NA	NA
UHGV-2062812_65	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2062812_65	Structural annotation	NF040910	NA	NA
UHGV-2062812_66	PHROG	phrog_4105	NA	unknown function
UHGV-2062812_66	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-2062812_67	PHROG	phrog_1129	holin	lysis
UHGV-2062812_67	UniRef90	UniRef90_A0A3R6U6I1	Enolase	NA
UHGV-2062812_67	eggNOG-mapper	1321782.HMPREF1986_00360	NA	NA
UHGV-2062812_67	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2062812_67	Structural annotation	PF06946	NA	NA
UHGV-2062812_68	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-2062812_68	PHROG	phrog_7	endolysin	lysis
UHGV-2062812_68	UniRef90	UniRef90_R5IS13	Lysozyme	NA
UHGV-2062812_68	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-2062812_68	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-2062812_68	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-2062812_68	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-2062812_68	HAMAP	MF_04110	Endolysin	NA
UHGV-2062812_68	Structural annotation	PF19127, MF_04110, TIGR04035, COG3772	NA	NA
UHGV-2062812_69	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2062812_69	PHROG	phrog_95	integrase	integration and excision
UHGV-2062812_69	UniRef90	UniRef90_A0A395V7I4	NA	NA
UHGV-2062812_69	eggNOG-mapper	1519439.JPJG01000107_gene1852	NA	NA
UHGV-2062812_69	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2062812_69	Pfam	PF07508	Recombinase	Recombinase
UHGV-2062812_69	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2062812_69	Pfam	PF14287	NA	DUF4368
UHGV-2062812_69	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2062812_69	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA
UHGV-2062812_70	eggNOG-mapper	903814.ELI_1138	NA	NA
UHGV-2062812_70	AcrCatalog	cluster_22369	NA	NA
UHGV-2062812_71	UniRef90	UniRef90_A0A373D539	Recombinase	NA
UHGV-2062812_71	eggNOG-mapper	483218.BACPEC_00289	NA	NA
UHGV-2062812_71	Pfam	PF01076	Plasmid recombination enzyme	Mob_Pre
UHGV-2062812_71	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2062812_71	Structural annotation	PF01076, NF041497, NF038178	NA	NA
UHGV-2062812_72	UniRef90	UniRef90_A0A845KKW7	LLM class flavin-dependent oxidoreductase	NA
UHGV-2062812_72	eggNOG-mapper	1121296.JONJ01000012_gene368	NA	NA
UHGV-2062812_72	Structural annotation	PF20075, TIGR03070, COG3655	NA	NA