UHGV-2063031

Genome information

Genome length 35,766 bps

CDS count 49

Completeness 93.89% (high-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-2063031
vOTU ID	vOTU-014446
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029396\|Ga0242782_100481\|provirus_1318_39825
BioSample	SAMN05545028
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.89% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.57
Jumbo phage	No

Genome content
Genome length	35,766 bps
GC content	44.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.83%
Average CDS length	683.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2063031_1	eggNOG-mapper	411468.CLOSCI_03925	NA	NA
UHGV-2063031_2	KOfam	K14059	int; integrase	NA
UHGV-2063031_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2063031_2	UniRef90	UniRef90_UPI000832193B	tyrosine-type recombinase/integrase	NA
UHGV-2063031_2	eggNOG-mapper	1232453.BAIF02000010_gene3323	Phage integrase family	NA
UHGV-2063031_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2063031_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2063031_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2063031_3	KOfam	K17580	CASC1; cancer susceptibility candidate protein 1	NA
UHGV-2063031_3	PHROG	phrog_38135	NA	unknown function
UHGV-2063031_3	UniRef90	UniRef90_UPI00082DF5D8	NA	NA
UHGV-2063031_3	eggNOG-mapper	742723.HMPREF9477_00941	dextransucrase activity	NA
UHGV-2063031_3	Pfam	PF14020	NA	DUF4236
UHGV-2063031_3	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-2063031_3	Structural annotation	PF14020, PF21602	NA	NA
UHGV-2063031_4	PHROG	phrog_1914	NA	unknown function
UHGV-2063031_4	UniRef90	UniRef90_UPI00082E76AA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2063031_4	eggNOG-mapper	411490.ANACAC_00619	IrrE N-terminal-like domain	NA
UHGV-2063031_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2063031_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2063031_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2063031_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2063031_5	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2063031_5	UniRef90	UniRef90_A0A5M9HWM6	Helix-turn-helix transcriptional regulator	NA
UHGV-2063031_5	eggNOG-mapper	33035.JPJF01000055_gene1671	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2063031_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2063031_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2063031_5	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-2063031_6	UniRef90	UniRef90_UPI001C8D6F01	transcriptional regulator	NA
UHGV-2063031_6	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2063031_8	PHROG	phrog_585	NA	unknown function
UHGV-2063031_8	UniRef90	UniRef90_UPI00082A7FCF	NA	NA
UHGV-2063031_8	eggNOG-mapper	543734.LCABL_13080	NA	NA
UHGV-2063031_8	Pfam	PF10711	NA	DUF2513
UHGV-2063031_8	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-2063031_9	Structural annotation	PF10743, TIGR01764, COG4220	NA	NA
UHGV-2063031_12	PHROG	phrog_18562	NA	unknown function
UHGV-2063031_12	eggNOG-mapper	1235799.C818_04196	NA	NA
UHGV-2063031_13	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2063031_13	UniRef90	UniRef90_UPI00082E7F29	NA	NA
UHGV-2063031_13	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-2063031_13	Pfam	PF10926	NA	DUF2800
UHGV-2063031_13	COG	COG2887	RecB family exonuclease	NA
UHGV-2063031_13	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2063031_14	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2063031_14	UniRef90	UniRef90_UPI00083143CC	NA	NA
UHGV-2063031_14	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-2063031_14	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2063031_14	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-2063031_15	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2063031_15	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2063031_15	UniRef90	UniRef90_UPI00082B13B6	DNA polymerase	NA
UHGV-2063031_15	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-2063031_15	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2063031_15	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2063031_15	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2063031_16	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2063031_16	UniRef90	UniRef90_UPI0008345EB4	virulence-associated E family protein	NA
UHGV-2063031_16	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-2063031_16	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2063031_16	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2063031_16	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-2063031_17	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2063031_17	UniRef90	UniRef90_UPI00083038AD	VRR-NUC domain-containing protein	NA
UHGV-2063031_17	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-2063031_17	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2063031_17	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-2063031_18	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2063031_18	UniRef90	UniRef90_UPI00082A6AF7	HNH endonuclease	NA
UHGV-2063031_18	eggNOG-mapper	1416012.V5UQG0_9CAUD	HNH endonuclease	NA
UHGV-2063031_18	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2063031_18	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2063031_18	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2063031_18	Structural annotation	PF07463, PF20987	NA	NA
UHGV-2063031_19	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2063031_19	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2063031_19	UniRef90	UniRef90_UPI001D05D829	DEAD/DEAH box helicase	NA
UHGV-2063031_19	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-2063031_19	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2063031_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2063031_19	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2063031_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2063031_19	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2063031_20	Structural annotation	PF10842, MF_00436, NF037951, COG1923	NA	NA
UHGV-2063031_24	UniRef90	UniRef90_UPI0008297C18	RNA polymerase subunit sigma-70	NA
UHGV-2063031_24	eggNOG-mapper	1232452.BAIB02000007_gene1634	NA	NA
UHGV-2063031_24	Structural annotation	PF02996	NA	NA
UHGV-2063031_25	PHROG	phrog_11623	NA	unknown function
UHGV-2063031_25	UniRef90	UniRef90_UPI0008327E4B	NA	NA
UHGV-2063031_25	eggNOG-mapper	610130.Closa_1387	NA	NA
UHGV-2063031_25	Pfam	PF12873	NA	DUF3825
UHGV-2063031_25	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-2063031_25	Structural annotation	PF12873	NA	NA
UHGV-2063031_26	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2063031_26	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2063031_26	UniRef90	UniRef90_UPI0008331D71	DNA adenine methylase	NA
UHGV-2063031_26	eggNOG-mapper	1232452.BAIB02000007_gene1633	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2063031_26	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-2063031_26	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2063031_26	COG	COG0338	DNA-adenine methylase	NA
UHGV-2063031_26	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-2063031_27	PHROG	phrog_2412	NA	unknown function
UHGV-2063031_27	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-2063031_27	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-2063031_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2063031_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2063031_28	UniRef90	UniRef90_UPI00083395FE	PBSX family phage terminase large subunit	NA
UHGV-2063031_28	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-2063031_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2063031_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2063031_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2063031_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-2063031_29	UniRef90	UniRef90_UPI0008351967	phage portal protein	NA
UHGV-2063031_29	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-2063031_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2063031_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2063031_30	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-2063031_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2063031_30	UniRef90	UniRef90_UPI00191552C0	phage minor capsid protein	NA
UHGV-2063031_30	eggNOG-mapper	1295642.H839_08294	Phage minor capsid protein 2	NA
UHGV-2063031_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2063031_30	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2063031_30	COG	COG2369	NA	NA
UHGV-2063031_30	Structural annotation	PF06152	NA	NA
UHGV-2063031_32	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2063031_32	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-2063031_33	PHROG	phrog_212	major head protein	head and packaging
UHGV-2063031_33	UniRef90	UniRef90_A0A396QI19	Phage capsid protein	NA
UHGV-2063031_33	eggNOG-mapper	1294142.CINTURNW_1029	NA	NA
UHGV-2063031_33	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2063031_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2063031_34	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-2063031_34	eggNOG-mapper	1161901.I1TLE4_9CAUD	NA	NA
UHGV-2063031_35	PHROG	phrog_793	head-tail adaptor	connector
UHGV-2063031_35	UniRef90	UniRef90_UPI00093A08E9	putative minor capsid protein	NA
UHGV-2063031_35	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-2063031_35	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-2063031_35	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-2063031_35	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2063031_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2063031_36	UniRef90	UniRef90_UPI00082D57A1	minor capsid protein	NA
UHGV-2063031_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2063031_36	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-2063031_37	PHROG	phrog_913	minor head protein	head and packaging
UHGV-2063031_37	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-2063031_37	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2063031_37	Structural annotation	PF12691	NA	NA
UHGV-2063031_38	PHROG	phrog_820	major tail protein	tail
UHGV-2063031_38	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-2063031_38	eggNOG-mapper	665959.HMPREF1013_00194	domain, Protein	NA
UHGV-2063031_38	COG	COG5492	NA	NA
UHGV-2063031_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2063031_39	Structural annotation	PF10666	NA	NA
UHGV-2063031_40	PHROG	phrog_706	NA	unknown function
UHGV-2063031_40	UniRef90	UniRef90_UPI0008360889	Gp15 family bacteriophage protein	NA
UHGV-2063031_40	eggNOG-mapper	1238184.CM001792_gene103	Bacteriophage Gp15 protein	NA
UHGV-2063031_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2063031_40	Structural annotation	PF06854	NA	NA
UHGV-2063031_41	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2063031_41	UniRef90	UniRef90_UPI000834CA70	phage tail tape measure protein	NA
UHGV-2063031_41	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-2063031_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2063031_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2063031_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2063031_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2063031_42	UniRef90	UniRef90_A0A415MTE8	Phage tail protein	NA
UHGV-2063031_42	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-2063031_42	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2063031_43	PHROG	phrog_538	minor tail protein	tail
UHGV-2063031_43	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2063031_43	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-2063031_43	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2063031_44	PHROG	phrog_9994	NA	unknown function
UHGV-2063031_44	UniRef90	UniRef90_UPI000C7605CE	H-type lectin domain-containing protein	NA
UHGV-2063031_44	eggNOG-mapper	553973.CLOHYLEM_07196	to Mitochondrial intermediate peptidase K01410	NA
UHGV-2063031_44	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2063031_44	Structural annotation	PF20747, PF16990	NA	NA
UHGV-2063031_45	Structural annotation	PF09458, NF012201	NA	NA
UHGV-2063031_46	PHROG	phrog_30034	NA	unknown function
UHGV-2063031_46	eggNOG-mapper	742765.HMPREF9457_03370	NA	NA
UHGV-2063031_47	PHROG	phrog_1382	NA	unknown function
UHGV-2063031_47	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-2063031_48	PHROG	phrog_1863	NA	unknown function
UHGV-2063031_48	eggNOG-mapper	411468.CLOSCI_01509	NA	NA
UHGV-2063031_49	PHROG	phrog_443	holin	lysis
UHGV-2063031_49	UniRef90	UniRef90_UPI0008299632	holin	NA
UHGV-2063031_49	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-2063031_49	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2063031_49	Structural annotation	PF16945	NA	NA