UHGV-2063469

Genome information

vOTU vOTU-019571

Genome length 24,099 bps

CDS count 39

Completeness 64.25% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-2063469
vOTU ID	vOTU-019571
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029364\|Ga0243886_1000055\|provirus_116050_148384
BioSample	SAMN05971598
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.39
Jumbo phage	No

Genome content
Genome length	24,099 bps
GC content	41.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	95.39%
Average CDS length	594.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2063469_1	PHROG	phrog_443	holin	lysis
UHGV-2063469_1	UniRef90	UniRef90_UPI001570A68C	holin	NA
UHGV-2063469_1	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-2063469_1	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2063469_1	Structural annotation	PF16945	NA	NA
UHGV-2063469_2	PHROG	phrog_4105	NA	unknown function
UHGV-2063469_2	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-2063469_3	PHROG	phrog_28526	NA	unknown function
UHGV-2063469_3	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-2063469_3	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-2063469_8	Structural annotation	PF10807, MF_01372, NF007541	NA	NA
UHGV-2063469_9	UniRef90	UniRef90_UPI00156D7781	SGNH/GDSL hydrolase family protein	NA
UHGV-2063469_9	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-2063469_9	Structural annotation	PF10651	NA	NA
UHGV-2063469_10	PHROG	phrog_19695	NA	unknown function
UHGV-2063469_10	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-2063469_10	Structural annotation	PF19714	NA	NA
UHGV-2063469_11	PHROG	phrog_12931	NA	unknown function
UHGV-2063469_11	eggNOG-mapper	411462.DORLON_00773	NA	NA
UHGV-2063469_13	PHROG	phrog_25635	NA	unknown function
UHGV-2063469_13	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-2063469_13	eggNOG-mapper	411462.DORLON_00774	NA	NA
UHGV-2063469_13	Structural annotation	PF20747	NA	NA
UHGV-2063469_14	PHROG	phrog_538	minor tail protein	tail
UHGV-2063469_14	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2063469_14	eggNOG-mapper	411462.DORLON_00775	NA	NA
UHGV-2063469_14	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2063469_14	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2063469_15	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-2063469_15	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2063469_16	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2063469_16	UniRef90	UniRef90_A0A174JJE7	Phage-related protein	NA
UHGV-2063469_16	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-2063469_16	COG	COG1511	NA	NA
UHGV-2063469_16	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2063469_17	PHROG	phrog_706	NA	unknown function
UHGV-2063469_17	UniRef90	UniRef90_A0A174JJ83	Bacteriophage Gp15 protein	NA
UHGV-2063469_17	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-2063469_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2063469_17	Structural annotation	PF06854	NA	NA
UHGV-2063469_18	PHROG	phrog_4450	NA	unknown function
UHGV-2063469_18	eggNOG-mapper	411461.DORFOR_00738	NA	NA
UHGV-2063469_18	Pfam	PF20378	NA	DUF6673
UHGV-2063469_18	Structural annotation	PF20378	NA	NA
UHGV-2063469_19	PHROG	phrog_3099	NA	unknown function
UHGV-2063469_19	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-2063469_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2063469_20	PHROG	phrog_3266	tail completion	connector
UHGV-2063469_20	eggNOG-mapper	742765.HMPREF9457_02131	NA	NA
UHGV-2063469_20	Structural annotation	PF12691	NA	NA
UHGV-2063469_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2063469_21	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-2063469_21	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-2063469_21	Structural annotation	PF11114	NA	NA
UHGV-2063469_22	PHROG	phrog_3366	NA	unknown function
UHGV-2063469_22	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-2063469_22	Pfam	PF20536	NA	DUF6751
UHGV-2063469_22	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2063469_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2063469_23	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-2063469_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-2063469_24	UniRef90	UniRef90_A0A391PHY8	Phage capsid protein	NA
UHGV-2063469_24	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-2063469_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2063469_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2063469_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2063469_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2063469_25	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2063469_25	eggNOG-mapper	411462.DORLON_00787	NA	NA
UHGV-2063469_25	AcrCatalog	cluster_74817	NA	NA
UHGV-2063469_25	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-2063469_26	KOfam	K07584	NA	NA
UHGV-2063469_26	PHROG	phrog_4478	peptidase	other
UHGV-2063469_26	UniRef90	UniRef90_A0A173TUJ7	Predicted ribosomal protein	NA
UHGV-2063469_26	eggNOG-mapper	411462.DORLON_00788	Pfam:Peptidase_C108	NA
UHGV-2063469_26	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2063469_26	COG	COG2868	NA	NA
UHGV-2063469_26	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2063469_27	PHROG	phrog_3711	NA	unknown function
UHGV-2063469_27	eggNOG-mapper	411462.DORLON_00789	NA	NA
UHGV-2063469_28	PHROG	phrog_21033	NA	unknown function
UHGV-2063469_28	UniRef90	UniRef90_A0A173VG74	Phage minor capsid protein 2	NA
UHGV-2063469_28	eggNOG-mapper	742765.HMPREF9457_02121	NA	NA
UHGV-2063469_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2063469_28	COG	COG2369	NA	NA
UHGV-2063469_28	Structural annotation	PF06152	NA	NA
UHGV-2063469_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-2063469_29	UniRef90	UniRef90_A6BES5	Phage minor capsid protein	NA
UHGV-2063469_29	eggNOG-mapper	411462.DORLON_00795	COG NOG25118 non supervised orthologous group	NA
UHGV-2063469_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2063469_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2063469_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2063469_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2063469_30	UniRef90	UniRef90_B0G3C9	Phage terminase, large subunit, PBSX family	NA
UHGV-2063469_30	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-2063469_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2063469_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2063469_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2063469_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2063469_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2063469_31	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-2063469_31	UniRef90	UniRef90_A0A391P905	DNA-binding protein	NA
UHGV-2063469_31	eggNOG-mapper	411461.DORFOR_00751	DNA packaging	NA
UHGV-2063469_31	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2063469_31	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2063469_31	COG	COG5484	NA	NA
UHGV-2063469_31	Structural annotation	NF040601, COG5484	NA	NA
UHGV-2063469_32	eggNOG-mapper	633697.EubceDRAFT1_2400	NA	NA
UHGV-2063469_32	Structural annotation	PF02556, MF_00821, NF004391, COG1952	NA	NA
UHGV-2063469_33	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-2063469_33	UniRef90	UniRef90_UPI0006BFE4E9	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2063469_33	eggNOG-mapper	33035.JPJF01000090_gene99	HicB family	NA
UHGV-2063469_33	Pfam	PF05534	HicB family	HicB
UHGV-2063469_33	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-2063469_33	Structural annotation	PF05534, NF041793, COG4226	NA	NA
UHGV-2063469_34	PHROG	phrog_8887	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2063469_34	UniRef90	UniRef90_UPI0006C39E78	type II toxin-antitoxin system HicA family toxin	NA
UHGV-2063469_34	eggNOG-mapper	633697.EubceDRAFT1_2398	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2063469_34	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2063469_34	Structural annotation	COG1724	NA	NA
UHGV-2063469_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2063469_35	UniRef90	UniRef90_UPI0018988F04	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2063469_35	eggNOG-mapper	411462.DORLON_00800	NA	NA
UHGV-2063469_35	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2063469_35	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-2063469_36	PHROG	phrog_7024	NA	unknown function
UHGV-2063469_36	eggNOG-mapper	1410653.JHVC01000011_gene971	NA	NA
UHGV-2063469_36	AcrCatalog	cluster_1398	NA	NA
UHGV-2063469_38	PHROG	phrog_15198	NA	unknown function
UHGV-2063469_38	UniRef90	UniRef90_UPI0011110A17	NA	NA
UHGV-2063469_38	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-2063469_38	Pfam	PF04448	NA	DUF551
UHGV-2063469_39	UniRef90	UniRef90_A0A414S2X3	NA	NA
UHGV-2063469_39	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-2063469_39	Pfam	PF04448	NA	DUF551
UHGV-2063469_39	Structural annotation	PF04448, NF041588	NA	NA