UHGV-2065503

Genome information

Genome length 31,466 bps

CDS count 37

Completeness 58.77% (medium-quality)

geNomad score 0.9509

Prediction confidence Confident

Genome information
Genome ID	UHGV-2065503
vOTU ID	vOTU-027088
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029390\|Ga0243991_1000114\|provirus_45756_86625
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	5
Recoded stop codon	No

Viral signal
geNomad score	0.9509
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.99
Jumbo phage	No

Genome content
Genome length	31,466 bps
GC content	45.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	89.72%
Average CDS length	766.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2065503_1	PHROG	phrog_2308	NA	unknown function
UHGV-2065503_1	UniRef90	UniRef90_D9SLI5	Sigma-70 region 4 type 2	NA
UHGV-2065503_1	eggNOG-mapper	411473.RUMCAL_03175	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2065503_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2065503_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2065503_2	PHROG	phrog_15001	endolysin	lysis
UHGV-2065503_2	UniRef90	UniRef90_A0A1C6CLM7	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-2065503_2	eggNOG-mapper	411473.RUMCAL_03176	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2065503_2	AcrCatalog	cluster_53013	NA	NA
UHGV-2065503_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2065503_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2065503_2	Structural annotation	PF01510, NF008758, COG5632	NA	NA
UHGV-2065503_3	PHROG	phrog_199	holin	lysis
UHGV-2065503_3	UniRef90	UniRef90_U2K757	Toxin secretion/phage lysis holin	NA
UHGV-2065503_3	eggNOG-mapper	411473.RUMCAL_03177	Bacteriophage holin family	NA
UHGV-2065503_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2065503_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2065503_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2065503_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2065503_4	KOfam	K19479	COL10A; collagen type X alpha	NA
UHGV-2065503_4	PHROG	phrog_25979	NA	unknown function
UHGV-2065503_4	eggNOG-mapper	411473.RUMCAL_03178	calcium- and calmodulin-responsive adenylate cyclase activity	NA
UHGV-2065503_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2065503_4	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-2065503_4	Structural annotation	PF01404, PF16640, NF038128	NA	NA
UHGV-2065503_5	PHROG	phrog_18805	NA	unknown function
UHGV-2065503_5	UniRef90	UniRef90_A0A374VPE7	Leucine-rich repeat domain-containing protein	NA
UHGV-2065503_5	eggNOG-mapper	411473.RUMCAL_03179	Leucine rich repeats (6 copies)	NA
UHGV-2065503_5	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2065503_5	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-2065503_5	Structural annotation	PF13306, PF20747	NA	NA
UHGV-2065503_6	PHROG	phrog_538	minor tail protein	tail
UHGV-2065503_6	UniRef90	UniRef90_UPI001D02F877	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2065503_6	eggNOG-mapper	411473.RUMCAL_03180	NA	NA
UHGV-2065503_6	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2065503_6	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2065503_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2065503_7	UniRef90	UniRef90_U2JPC0	Phage tail component protein	NA
UHGV-2065503_7	eggNOG-mapper	411473.RUMCAL_03181	Phage tail protein	NA
UHGV-2065503_7	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2065503_7	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2065503_7	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-2065503_8	KOfam	K03892	arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor	NA
UHGV-2065503_8	UniRef90	UniRef90_A0A316Q6X8	ArsR family transcriptional regulator	NA
UHGV-2065503_8	eggNOG-mapper	1235802.C823_05152	helix_turn_helix, Arsenical Resistance Operon Repressor	NA
UHGV-2065503_8	PADLOC	COG0640	Csa3_1_CAS-I-II-III-IV-V-VI	CRISPR-CAS
UHGV-2065503_8	Pfam	PF01022	Bacterial regulatory protein, arsR family	HTH_5
UHGV-2065503_8	NCBIFam	NF033788.1	metalloregulator ArsR/SmtB family transcription factor	NA
UHGV-2065503_8	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-2065503_9	UniRef90	UniRef90_A0A1Y4SLL9	NA	NA
UHGV-2065503_9	eggNOG-mapper	1504822.CCNO01000014_gene1286	methyltransferase	NA
UHGV-2065503_9	Pfam	PF18978	NA	DUF5714
UHGV-2065503_9	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-2065503_10	KOfam	K03741	arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]	NA
UHGV-2065503_10	UniRef90	UniRef90_A0A6L5XWB2	Arsenate reductase ArsC	NA
UHGV-2065503_10	eggNOG-mapper	515620.EUBELI_20104	Belongs to the low molecular weight phosphotyrosine protein phosphatase family	NA
UHGV-2065503_10	Pfam	PF01451	Low molecular weight phosphotyrosine protein phosphatase	LMWPc
UHGV-2065503_10	COG	COG0394	Protein-tyrosine-phosphatase	NA
UHGV-2065503_11	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2065503_11	UniRef90	UniRef90_U2LLX0	Phage tail tape measure protein, TP901 family	NA
UHGV-2065503_11	eggNOG-mapper	411473.RUMCAL_03183	Phage tail tape measure protein, TP901 family	NA
UHGV-2065503_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2065503_11	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-2065503_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2065503_11	COG	COG5283	Phage-related tail protein	NA
UHGV-2065503_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2065503_12	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-2065503_12	PHROG	phrog_9764	NA	unknown function
UHGV-2065503_12	UniRef90	UniRef90_A0A7X5KRS0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-2065503_12	eggNOG-mapper	518637.EUBIFOR_01438	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-2065503_12	PADLOC	AbiQ	AbiQ	Abi
UHGV-2065503_12	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-2065503_12	Structural annotation	PF13958	NA	NA
UHGV-2065503_13	PHROG	phrog_3033	NA	unknown function
UHGV-2065503_13	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-2065503_13	eggNOG-mapper	411473.RUMCAL_03186	NA	NA
UHGV-2065503_14	PHROG	phrog_709	NA	unknown function
UHGV-2065503_14	eggNOG-mapper	411473.RUMCAL_03187	NA	NA
UHGV-2065503_14	Structural annotation	PF11836	NA	NA
UHGV-2065503_15	PHROG	phrog_88	major tail protein	tail
UHGV-2065503_15	UniRef90	UniRef90_U2LLX5	Phage major tail protein, phi13 family	NA
UHGV-2065503_15	eggNOG-mapper	411473.RUMCAL_03188	phage major tail protein, phi13 family	NA
UHGV-2065503_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2065503_15	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2065503_16	PHROG	phrog_78	tail terminator	connector
UHGV-2065503_16	UniRef90	UniRef90_UPI0005C7AE81	NA	NA
UHGV-2065503_16	eggNOG-mapper	411473.RUMCAL_03189	NA	NA
UHGV-2065503_16	Structural annotation	PF20765	NA	NA
UHGV-2065503_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2065503_17	UniRef90	UniRef90_U2KW23	Phage protein, HK97 gp10 family	NA
UHGV-2065503_17	eggNOG-mapper	411473.RUMCAL_03190	NA	NA
UHGV-2065503_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2065503_17	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2065503_18	PHROG	phrog_25	head closure Hc1	connector
UHGV-2065503_18	UniRef90	UniRef90_A0A1C6CLJ6	Bacteriophage head-tail adaptor	NA
UHGV-2065503_18	eggNOG-mapper	411473.RUMCAL_03191	Phage head-tail joining protein	NA
UHGV-2065503_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2065503_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2065503_18	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2065503_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2065503_19	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2065503_19	UniRef90	UniRef90_U2K771	Phage DNA packaging protein	NA
UHGV-2065503_19	eggNOG-mapper	411473.RUMCAL_03192	Phage DNA packaging protein	NA
UHGV-2065503_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2065503_19	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2065503_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2065503_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-2065503_20	UniRef90	UniRef90_U2LLX8	Phage capsid family protein	NA
UHGV-2065503_20	eggNOG-mapper	411473.RUMCAL_03193	Phage major capsid protein, HK97 family	NA
UHGV-2065503_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2065503_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2065503_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2065503_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2065503_21	KOfam	K20170	nicA1; nicotine oxidoreductase [EC:1.5.3.-]	NA
UHGV-2065503_21	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2065503_21	UniRef90	UniRef90_U2LF84	Group II intron-encoded protein LtrA	NA
UHGV-2065503_21	eggNOG-mapper	411473.RUMCAL_03194	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2065503_21	PADLOC	HEase_00017	homing endonuclease	RM
UHGV-2065503_21	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2065503_21	Pfam	PF01348	Type II intron maturase	Intron_maturas2
UHGV-2065503_21	Pfam	PF21368	AI2M/AI1M-like, HNH endonuclease	AI2M-like_HNH
UHGV-2065503_21	NCBIFam	TIGR04416.1	group II intron reverse transcriptase/maturase	NA
UHGV-2065503_21	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2065503_21	Structural annotation	PF00078, PF01348, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-2065503_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-2065503_22	UniRef90	UniRef90_A0A3D5KVZ1	Phage major capsid protein (Fragment)	NA
UHGV-2065503_22	eggNOG-mapper	411473.RUMCAL_01623	Phage major capsid protein, HK97 family	NA
UHGV-2065503_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2065503_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2065503_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2065503_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-2065503_23	UniRef90	UniRef90_U2M1G3	Phage portal protein, HK97 family	NA
UHGV-2065503_23	eggNOG-mapper	411473.RUMCAL_01625	Phage portal protein, HK97 family	NA
UHGV-2065503_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2065503_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2065503_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2065503_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2065503_24	KOfam	K07028	NA	NA
UHGV-2065503_24	PHROG	phrog_35548	NA	unknown function
UHGV-2065503_24	UniRef90	UniRef90_A0A239QG07	Predicted kinase	NA
UHGV-2065503_24	eggNOG-mapper	1280664.AUIX01000015_gene2261	AAA domain	NA
UHGV-2065503_24	Pfam	PF13671	AAA domain	AAA_33
UHGV-2065503_24	COG	COG0645	Predicted kinase, contains AAA domain	NA
UHGV-2065503_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2065503_25	UniRef90	UniRef90_A0A1K1YL55	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2065503_25	eggNOG-mapper	1384066.JAGT01000001_gene941	large subunit	NA
UHGV-2065503_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2065503_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2065503_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2065503_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2065503_26	PHROG	phrog_4709	NA	unknown function
UHGV-2065503_26	eggNOG-mapper	411473.RUMCAL_00553	NA	NA
UHGV-2065503_26	AcrCatalog	cluster_3300	NA	NA
UHGV-2065503_27	eggNOG-mapper	411473.RUMCAL_01614	NA	NA
UHGV-2065503_28	PHROG	phrog_2945	NA	unknown function
UHGV-2065503_28	eggNOG-mapper	411473.RUMCAL_01613	NA	NA
UHGV-2065503_29	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-2065503_29	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-2065503_29	UniRef90	UniRef90_UPI001D00B1EF	gamma-glutamylcyclotransferase	NA
UHGV-2065503_29	eggNOG-mapper	1200567.JNKD01000011_gene665	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-2065503_29	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-2065503_29	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2065503_29	Structural annotation	PF06094, COG2105	NA	NA
UHGV-2065503_30	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2065503_30	UniRef90	UniRef90_A0A374VLD6	Alpha-L-fucosidase	NA
UHGV-2065503_30	eggNOG-mapper	1410670.JHXF01000015_gene2282	NA	NA
UHGV-2065503_30	AcrCatalog	cluster_16277	NA	NA
UHGV-2065503_30	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-2065503_30	Structural annotation	PF12224	NA	NA
UHGV-2065503_31	PHROG	phrog_3782	NA	unknown function
UHGV-2065503_31	UniRef90	UniRef90_U2MCM9	NA	NA
UHGV-2065503_31	eggNOG-mapper	411473.RUMCAL_00591	NA	NA
UHGV-2065503_31	Pfam	PF14192	NA	DUF4314
UHGV-2065503_31	Structural annotation	PF14192, MF_00754, NF007106	NA	NA
UHGV-2065503_32	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2065503_32	UniRef90	UniRef90_A0A374VL88	Virulence protein	NA
UHGV-2065503_32	eggNOG-mapper	411473.RUMCAL_02011	NA	NA
UHGV-2065503_32	AcrCatalog	cluster_14489	NA	NA
UHGV-2065503_33	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2065503_33	PHROG	phrog_38038	NA	unknown function
UHGV-2065503_33	UniRef90	UniRef90_A0A374VL86	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2065503_33	eggNOG-mapper	755731.Clo1100_3595	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2065503_33	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-2065503_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2065503_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2065503_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2065503_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2065503_34	UniRef90	UniRef90_UPI001D00E524	DNA cytosine methyltransferase	NA
UHGV-2065503_34	eggNOG-mapper	411473.RUMCAL_02780	C-5 cytosine-specific DNA methylase	NA
UHGV-2065503_34	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-2065503_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2065503_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2065503_35	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2065503_35	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2065503_35	UniRef90	UniRef90_R7H1S7	ParB domain-containing protein	NA
UHGV-2065503_35	eggNOG-mapper	641112.ACOK01000108_gene1785	NA	NA
UHGV-2065503_35	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2065503_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2065503_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2065503_35	COG	COG0863	DNA modification methylase	NA
UHGV-2065503_35	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2065503_36	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2065503_36	UniRef90	UniRef90_A0A374VKN7	Terminase	NA
UHGV-2065503_36	eggNOG-mapper	1384066.JAGT01000001_gene952	NA	NA
UHGV-2065503_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2065503_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2065503_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2065503_37	UniRef90	UniRef90_U2M5V9	Sigma70_r4 domain-containing protein	NA
UHGV-2065503_37	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2065503_37	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA