UHGV-2065663

Genome information

Genome length 32,676 bps

CDS count 51

Completeness 87.35% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-2065663
vOTU ID	vOTU-033506
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029386\|Ga0243981_1000213\|provirus_37441_75454
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.86
Jumbo phage	No

Genome content
Genome length	32,676 bps
GC content	59.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.93%
Average CDS length	594.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2065663_1	UniRef90	UniRef90_UPI00164D2F4A	NA	NA
UHGV-2065663_1	eggNOG-mapper	1519439.JPJG01000074_gene1265	NA	NA
UHGV-2065663_1	Pfam	PF14133	NA	DUF4300
UHGV-2065663_2	KOfam	K14059	int; integrase	NA
UHGV-2065663_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2065663_2	UniRef90	UniRef90_UPI001C03825E	site-specific integrase	NA
UHGV-2065663_2	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-2065663_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2065663_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2065663_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2065663_5	UniRef90	UniRef90_G4L1F8	Putative Xre family DNA-binding protein	NA
UHGV-2065663_5	eggNOG-mapper	693746.OBV_19770	sequence-specific DNA binding	NA
UHGV-2065663_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2065663_5	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-2065663_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2065663_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2065663_8	UniRef90	UniRef90_UPI001C01CA3C	helix-turn-helix domain-containing protein	NA
UHGV-2065663_8	eggNOG-mapper	693746.OBV_19790	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2065663_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2065663_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2065663_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2065663_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2065663_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2065663_9	UniRef90	UniRef90_UPI001C0376BE	helix-turn-helix domain-containing protein	NA
UHGV-2065663_9	eggNOG-mapper	1089548.KI783301_gene2641	Helix-turn-helix XRE-family like proteins	NA
UHGV-2065663_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2065663_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2065663_10	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-2065663_11	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-2065663_11	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-2065663_11	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-2065663_11	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2065663_11	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2065663_11	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-2065663_13	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2065663_13	UniRef90	UniRef90_UPI001C0106CE	helix-turn-helix domain-containing protein	NA
UHGV-2065663_13	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-2065663_13	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2065663_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2065663_13	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-2065663_14	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2065663_14	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2065663_14	UniRef90	UniRef90_U2SBV6	DNA helicase	NA
UHGV-2065663_14	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-2065663_14	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2065663_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2065663_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-2065663_14	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-2065663_16	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2065663_16	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2065663_16	UniRef90	UniRef90_UPI001C0253FB	ParA family protein	NA
UHGV-2065663_16	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-2065663_16	Pfam	PF13614	AAA domain	AAA_31
UHGV-2065663_16	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2065663_16	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2065663_17	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2065663_17	PHROG	phrog_27290	NA	unknown function
UHGV-2065663_17	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-2065663_17	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-2065663_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2065663_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2065663_17	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2065663_20	Structural annotation	NF040595	NA	NA
UHGV-2065663_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2065663_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2065663_21	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-2065663_21	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-2065663_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2065663_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2065663_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2065663_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2065663_21	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2065663_23	PHROG	phrog_38832	NA	unknown function
UHGV-2065663_23	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-2065663_23	Structural annotation	PF07073	NA	NA
UHGV-2065663_24	UniRef90	UniRef90_UPI00082EBC63	Lar family restriction alleviation protein	NA
UHGV-2065663_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2065663_26	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-2065663_26	Structural annotation	PF21578	NA	NA
UHGV-2065663_27	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-2065663_27	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-2065663_27	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-2065663_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2065663_28	UniRef90	UniRef90_UPI001C022B94	HNH endonuclease	NA
UHGV-2065663_28	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-2065663_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2065663_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2065663_28	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2065663_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2065663_30	UniRef90	UniRef90_UPI001C0120D8	P27 family phage terminase small subunit	NA
UHGV-2065663_30	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-2065663_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2065663_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2065663_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2065663_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2065663_31	UniRef90	UniRef90_UPI001C00FA97	terminase large subunit	NA
UHGV-2065663_31	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-2065663_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2065663_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2065663_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2065663_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2065663_32	UniRef90	UniRef90_UPI001C0385AF	aluminum activated malate transporter family protein	NA
UHGV-2065663_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-2065663_33	UniRef90	UniRef90_UPI001C011923	phage portal protein	NA
UHGV-2065663_33	eggNOG-mapper	861450.HMPREF0080_02045	Phage portal protein	NA
UHGV-2065663_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2065663_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2065663_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2065663_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2065663_34	PHROG	phrog_16951	NA	unknown function
UHGV-2065663_34	UniRef90	UniRef90_R6LX42	PE-PGRS family protein	NA
UHGV-2065663_34	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-2065663_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2065663_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-2065663_35	UniRef90	UniRef90_UPI001C010AB8	phage major capsid protein	NA
UHGV-2065663_35	eggNOG-mapper	1219626.HMPREF1639_07425	Phage capsid family	NA
UHGV-2065663_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2065663_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2065663_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2065663_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2065663_36	UniRef90	UniRef90_UPI001C00D52E	SH3 domain-containing protein	NA
UHGV-2065663_36	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2065663_36	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2065663_37	UniRef90	UniRef90_UPI001C018007	head-tail connector protein	NA
UHGV-2065663_37	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-2065663_37	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2065663_37	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2065663_38	PHROG	phrog_25	head closure Hc1	connector
UHGV-2065663_38	UniRef90	UniRef90_UPI001C028139	phage head closure protein	NA
UHGV-2065663_38	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-2065663_38	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2065663_38	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2065663_38	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2065663_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2065663_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2065663_39	UniRef90	UniRef90_UPI001C02CC0B	HK97 gp10 family phage protein	NA
UHGV-2065663_39	eggNOG-mapper	1203606.HMPREF1526_01342	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2065663_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2065663_39	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2065663_40	PHROG	phrog_525	NA	unknown function
UHGV-2065663_40	eggNOG-mapper	318464.IO99_13730	NA	NA
UHGV-2065663_40	Pfam	PF20765	NA	DUF6838
UHGV-2065663_40	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-2065663_41	PHROG	phrog_1480	tail sheath	tail
UHGV-2065663_41	UniRef90	UniRef90_UPI001C020588	phage tail protein	NA
UHGV-2065663_41	eggNOG-mapper	97138.C820_00609	Phage tail sheath C-terminal domain	NA
UHGV-2065663_41	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2065663_41	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2065663_42	PHROG	phrog_365	tail protein	tail
UHGV-2065663_42	UniRef90	UniRef90_UPI001C00EEC8	phage tail tube protein	NA
UHGV-2065663_42	eggNOG-mapper	641107.CDLVIII_1345	Phage tail tube protein	NA
UHGV-2065663_42	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2065663_42	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2065663_43	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-2065663_43	eggNOG-mapper	1203606.HMPREF1526_01346	NA	NA
UHGV-2065663_43	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-2065663_44	PHROG	phrog_973	tail length tape measure protein	tail
UHGV-2065663_44	UniRef90	UniRef90_A0A3F2ZYT8	Putative prophage LambdaBa01, membrane protein	NA
UHGV-2065663_44	eggNOG-mapper	632245.CLP_2908	phage tail tape measure protein	NA
UHGV-2065663_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2065663_44	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2065663_45	PHROG	phrog_5184	NA	unknown function
UHGV-2065663_45	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-2065663_45	eggNOG-mapper	1286171.EAL2_c11150	LysM domain	NA
UHGV-2065663_45	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2065663_45	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-2065663_46	PHROG	phrog_400	tail protein	tail
UHGV-2065663_46	UniRef90	UniRef90_UPI000F0469E9	CHAP domain-containing protein	NA
UHGV-2065663_46	eggNOG-mapper	469617.FUAG_01850	Late control gene D protein	NA
UHGV-2065663_46	COG	COG3500	NA	NA
UHGV-2065663_46	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2065663_47	Structural annotation	PF10844	NA	NA
UHGV-2065663_48	UniRef90	UniRef90_UPI001C010E9D	NA	NA
UHGV-2065663_48	Pfam	PF10934	NA	DUF2634
UHGV-2065663_48	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2065663_48	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-2065663_49	PHROG	phrog_6	baseplate protein	tail
UHGV-2065663_49	UniRef90	UniRef90_UPI001C019A1C	baseplate J/gp47 family protein	NA
UHGV-2065663_49	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-2065663_49	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2065663_49	COG	COG3299	NA	NA
UHGV-2065663_49	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2065663_50	PHROG	phrog_521	tail protein	tail
UHGV-2065663_50	UniRef90	UniRef90_UPI001C00D44E	NA	NA
UHGV-2065663_50	eggNOG-mapper	1120998.AUFC01000013_gene2954	NA	NA
UHGV-2065663_50	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2065663_50	COG	COG3778	NA	NA
UHGV-2065663_50	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2065663_51	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA