UHGV-2065664

Genome information

Genome length 38,188 bps

CDS count 37

Completeness 99.90% (high-quality)

geNomad score 0.9570

Prediction confidence Confident

Genome information
Genome ID	UHGV-2065664
vOTU ID	vOTU-010385
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029386\|Ga0243981_1000231\|provirus_64660_102847
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9570
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.39
Jumbo phage	No

Genome content
Genome length	38,188 bps
GC content	54.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.31%
Average CDS length	956.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2065664_1	PHROG	phrog_26724	NA	unknown function
UHGV-2065664_1	UniRef90	UniRef90_A0A5B5WY97	Terminase_6C domain-containing protein	NA
UHGV-2065664_1	eggNOG-mapper	349741.Amuc_0386	Terminase	NA
UHGV-2065664_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2065664_1	Structural annotation	PF04466, PF17289, MF_04146, TIGR01547, COG1783	NA	NA
UHGV-2065664_2	PHROG	phrog_376	tail protein	tail
UHGV-2065664_2	eggNOG-mapper	1121434.AULY01000011_gene1835	NA	NA
UHGV-2065664_2	Structural annotation	PF11134, MF_01605, NF008258, COG4247	NA	NA
UHGV-2065664_4	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2065664_4	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2065664_4	UniRef90	UniRef90_UPI001BFF494A	terminase small subunit	NA
UHGV-2065664_5	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-2065664_6	UniRef90	UniRef90_A0A8F1DBG9	Helix-turn-helix transcriptional regulator	NA
UHGV-2065664_7	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-2065664_8	PHROG	phrog_631	NA	unknown function
UHGV-2065664_8	eggNOG-mapper	82995.CR62_16630	NA	NA
UHGV-2065664_8	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-2065664_9	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2065664_9	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2065664_9	UniRef90	UniRef90_R7DZF8	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2065664_9	eggNOG-mapper	318586.Pden_0261	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2065664_9	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-2065664_9	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2065664_9	COG	COG0338	DNA-adenine methylase	NA
UHGV-2065664_9	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-2065664_10	eggNOG-mapper	160492.XF_1666	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-2065664_10	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2065664_10	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2065664_11	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2065664_11	UniRef90	UniRef90_A0A8F1KEP2	NA	NA
UHGV-2065664_11	eggNOG-mapper	1033743.CAES01000020_gene3156	NA	NA
UHGV-2065664_11	Pfam	PF10926	NA	DUF2800
UHGV-2065664_11	COG	COG2887	RecB family exonuclease	NA
UHGV-2065664_11	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2065664_12	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2065664_12	UniRef90	UniRef90_UPI001C6361B5	recombinase RecT	NA
UHGV-2065664_12	eggNOG-mapper	742733.HMPREF9469_01849	NA	NA
UHGV-2065664_12	Structural annotation	TIGR01913, COG3723	NA	NA
UHGV-2065664_13	PHROG	phrog_210	NA	unknown function
UHGV-2065664_13	UniRef90	UniRef90_R6JYL6	NA	NA
UHGV-2065664_13	eggNOG-mapper	1042375.AFPL01000026_gene3570	NA	NA
UHGV-2065664_13	Pfam	PF10065	NA	DUF2303
UHGV-2065664_13	COG	COG5532	NA	NA
UHGV-2065664_13	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2065664_14	PHROG	phrog_204	NA	unknown function
UHGV-2065664_21	PHROG	phrog_13899	NA	unknown function
UHGV-2065664_21	UniRef90	UniRef90_A0A8A5FIM7	Toll/interleukin-1 receptor domain-containing protein	NA
UHGV-2065664_21	eggNOG-mapper	371731.Rsw2DRAFT_2568	TIR domain	NA
UHGV-2065664_21	PADLOC	TIR_TM	NA	NA
UHGV-2065664_21	Pfam	PF01582	TIR domain	TIR
UHGV-2065664_22	PHROG	phrog_7441	NA	unknown function
UHGV-2065664_22	UniRef90	UniRef90_A0A849UM22	SHOCT domain-containing protein	NA
UHGV-2065664_22	eggNOG-mapper	1265503.KB905160_gene2573	NA	NA
UHGV-2065664_23	UniRef90	UniRef90_B2KCT3	Lipoprotein, putative	NA
UHGV-2065664_24	PHROG	phrog_30335	NA	unknown function
UHGV-2065664_24	UniRef90	UniRef90_A0A5B5WUD1	PBECR3 domain-containing protein	NA
UHGV-2065664_24	eggNOG-mapper	585503.HMPREF7545_1744	NA	NA
UHGV-2065664_24	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-2065664_24	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-2065664_25	UniRef90	UniRef90_A0A8A5FC00	Glucosaminidase domain-containing protein	NA
UHGV-2065664_25	eggNOG-mapper	1287276.X752_13935	lytic transglycosylase activity	NA
UHGV-2065664_25	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-2065664_25	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-2065664_25	Structural annotation	NF007681	NA	NA
UHGV-2065664_27	Structural annotation	TIGR02971	NA	NA
UHGV-2065664_28	PHROG	phrog_394	tail protein	tail
UHGV-2065664_28	Structural annotation	PF17212	NA	NA
UHGV-2065664_29	PHROG	phrog_3742	NA	unknown function
UHGV-2065664_29	eggNOG-mapper	349741.Amuc_2058	NA	NA
UHGV-2065664_31	PHROG	phrog_332	head-tail adaptor	connector
UHGV-2065664_31	UniRef90	UniRef90_UPI001C038F98	portal protein	NA
UHGV-2065664_31	eggNOG-mapper	349741.Amuc_2060	Bacteriophage head to tail connecting protein	NA
UHGV-2065664_31	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-2065664_31	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-2065664_32	PHROG	phrog_315	endolysin	lysis
UHGV-2065664_32	UniRef90	UniRef90_A0A410SED1	PG_binding_3 domain-containing protein	NA
UHGV-2065664_32	eggNOG-mapper	349741.Amuc_1360	Glycosyl hydrolase 108	NA
UHGV-2065664_32	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-2065664_32	COG	COG3926	Lysozyme family protein	NA
UHGV-2065664_32	Structural annotation	PF09374, NF040573, COG3926	NA	NA
UHGV-2065664_35	UniRef90	UniRef90_UPI001EDF593B	NA	NA
UHGV-2065664_37	UniRef90	UniRef90_UPI00080CAD8A	collagen-like protein	NA