UHGV-2065881

Genome information

Genome length 36,979 bps

CDS count 56

Completeness 82.25% (medium-quality)

geNomad score 0.9695

Prediction confidence Confident

Genome information
Genome ID	UHGV-2065881
vOTU ID	vOTU-018546
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029415\|Ga0243378_1000062\|provirus_25940_70002
BioSample	SAMEA2582098
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9695
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.9
Jumbo phage	No

Genome content
Genome length	36,979 bps
GC content	44.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	94.76%
Average CDS length	629.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2065881_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2065881_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2065881_1	UniRef90	UniRef90_UPI00084915C6	tyrosine-type recombinase/integrase	NA
UHGV-2065881_1	eggNOG-mapper	1304866.K413DRAFT_1209	Belongs to the 'phage' integrase family	NA
UHGV-2065881_1	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2065881_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2065881_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2065881_1	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2065881_4	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-2065881_4	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-2065881_4	UniRef90	UniRef90_A0A350RPP3	SPOR domain-containing protein	NA
UHGV-2065881_4	eggNOG-mapper	511680.BUTYVIB_00396	peptidase	NA
UHGV-2065881_4	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2065881_4	Pfam	PF05036	SPOR domain	SPOR
UHGV-2065881_4	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-2065881_4	Structural annotation	PF01551, PF05036, MF_02022, NF040883, NF008641, COG0739	NA	NA
UHGV-2065881_5	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-2065881_6	PHROG	phrog_9428	NA	unknown function
UHGV-2065881_6	UniRef90	UniRef90_A0A3A6GVM2	Serine/threonine protein kinase	NA
UHGV-2065881_6	eggNOG-mapper	411470.RUMGNA_00253	NA	NA
UHGV-2065881_10	PHROG	phrog_18190	NA	unknown function
UHGV-2065881_10	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-2065881_10	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-2065881_11	PHROG	phrog_1194	NA	unknown function
UHGV-2065881_11	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-2065881_11	Pfam	PF20458	NA	DUF6711
UHGV-2065881_11	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2065881_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2065881_12	eggNOG-mapper	33035.JPJF01000043_gene1003	phage tail tape measure protein	NA
UHGV-2065881_12	COG	COG1511	NA	NA
UHGV-2065881_13	PHROG	phrog_706	NA	unknown function
UHGV-2065881_13	UniRef90	UniRef90_R5H1B0	Bacteriophage Gp15 protein	NA
UHGV-2065881_13	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-2065881_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2065881_13	Structural annotation	PF06854	NA	NA
UHGV-2065881_14	PHROG	phrog_11299	NA	unknown function
UHGV-2065881_14	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-2065881_14	Structural annotation	PF10666	NA	NA
UHGV-2065881_15	PHROG	phrog_3099	NA	unknown function
UHGV-2065881_15	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-2065881_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2065881_16	PHROG	phrog_3266	tail completion	connector
UHGV-2065881_16	UniRef90	UniRef90_A0A416DT59	Chloramphenicol resistance protein	NA
UHGV-2065881_16	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-2065881_16	Structural annotation	PF12691	NA	NA
UHGV-2065881_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2065881_17	UniRef90	UniRef90_UPI00067E9657	minor capsid protein	NA
UHGV-2065881_17	eggNOG-mapper	1235790.C805_00048	NA	NA
UHGV-2065881_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2065881_17	Structural annotation	PF11114	NA	NA
UHGV-2065881_18	PHROG	phrog_3366	NA	unknown function
UHGV-2065881_18	Pfam	PF20536	NA	DUF6751
UHGV-2065881_18	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-2065881_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2065881_20	PHROG	phrog_212	major head protein	head and packaging
UHGV-2065881_20	UniRef90	UniRef90_A0A350VVC8	Phage capsid protein	NA
UHGV-2065881_20	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-2065881_20	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2065881_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2065881_21	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-2065881_21	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2065881_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2065881_21	Structural annotation	PF06810	NA	NA
UHGV-2065881_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2065881_23	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-2065881_23	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-2065881_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2065881_23	COG	COG2369	NA	NA
UHGV-2065881_23	Structural annotation	PF06152	NA	NA
UHGV-2065881_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2065881_24	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-2065881_24	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-2065881_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2065881_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2065881_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2065881_25	UniRef90	UniRef90_A0A350VVC2	PBSX family phage terminase large subunit	NA
UHGV-2065881_25	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-2065881_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2065881_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2065881_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2065881_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2065881_26	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2065881_26	UniRef90	UniRef90_UPI00100A781C	transposase	NA
UHGV-2065881_26	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-2065881_26	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2065881_26	Structural annotation	PF07141	NA	NA
UHGV-2065881_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2065881_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2065881_28	UniRef90	UniRef90_A0A350VVC0	Single-stranded DNA-binding protein	NA
UHGV-2065881_28	eggNOG-mapper	679200.HMPREF9333_00481	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2065881_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2065881_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2065881_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2065881_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2065881_28	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2065881_30	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2065881_30	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-2065881_31	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-2065881_31	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-2065881_32	PHROG	phrog_15077	NA	unknown function
UHGV-2065881_32	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-2065881_32	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-2065881_32	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2065881_33	PHROG	phrog_8470	NA	unknown function
UHGV-2065881_33	UniRef90	UniRef90_UPI001D0E6B3F	PcfJ domain-containing protein	NA
UHGV-2065881_33	eggNOG-mapper	411902.CLOBOL_05697	PcfJ-like protein	NA
UHGV-2065881_33	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2065881_33	Structural annotation	PF14284	NA	NA
UHGV-2065881_34	PHROG	phrog_4433	NA	unknown function
UHGV-2065881_34	eggNOG-mapper	742740.HMPREF9474_02957	regulation of DNA-templated transcription, elongation	NA
UHGV-2065881_34	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2065881_34	Structural annotation	PF12120, NF000318	NA	NA
UHGV-2065881_35	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-2065881_36	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2065881_36	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2065881_36	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-2065881_36	eggNOG-mapper	986075.CathTA2_0778	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2065881_36	Pfam	PF00075	RNase H	RNase_H
UHGV-2065881_36	COG	COG0328	Ribonuclease HI	NA
UHGV-2065881_36	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2065881_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2065881_37	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-2065881_37	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2065881_39	PHROG	phrog_32437	NA	unknown function
UHGV-2065881_39	UniRef90	UniRef90_A0A350VVB0	SLT domain-containing protein	NA
UHGV-2065881_39	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-2065881_39	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-2065881_39	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-2065881_40	Pfam	PF20323	NA	DUF6618
UHGV-2065881_40	Structural annotation	PF20323	NA	NA
UHGV-2065881_45	PHROG	phrog_750	NA	unknown function
UHGV-2065881_45	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-2065881_45	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2065881_50	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2065881_50	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2065881_50	UniRef90	UniRef90_A0A350VVA2	XRE family transcriptional regulator	NA
UHGV-2065881_50	eggNOG-mapper	1095750.HMPREF9970_1686	Helix-turn-helix XRE-family like proteins	NA
UHGV-2065881_50	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2065881_50	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2065881_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2065881_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2065881_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2065881_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2065881_51	UniRef90	UniRef90_A0A350VVA1	XRE family transcriptional regulator	NA
UHGV-2065881_51	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-2065881_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2065881_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2065881_51	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-2065881_52	eggNOG-mapper	562981.HMPREF0428_01861	NA	NA
UHGV-2065881_53	PHROG	phrog_87	metallo-protease	other
UHGV-2065881_53	UniRef90	UniRef90_A0A350VV99	Peptidase_M78 domain-containing protein	NA
UHGV-2065881_53	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-2065881_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2065881_53	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2065881_53	Structural annotation	PF06114	NA	NA
UHGV-2065881_54	PHROG	phrog_5467	NA	unknown function
UHGV-2065881_54	UniRef90	UniRef90_A0A350VV98	NA	NA
UHGV-2065881_54	eggNOG-mapper	1235802.C823_03128	NA	NA
UHGV-2065881_54	Pfam	PF10088	NA	DUF2326
UHGV-2065881_54	COG	COG5293	NA	NA
UHGV-2065881_54	Structural annotation	PF13166, MF_00449, TIGR03185, COG5293	NA	NA
UHGV-2065881_55	eggNOG-mapper	1235802.C823_03127	NA	NA
UHGV-2065881_55	Pfam	PF20293	ABC-three component (ABC-3C) system Middle Component 6	MC6
UHGV-2065881_56	eggNOG-mapper	1211814.CAPG01000036_gene1854	Nacht domain	NA
UHGV-2065881_56	Pfam	PF20275	C-terminal domain 10 of the ABC-three component (ABC-3C) systems	CTD10
UHGV-2065881_56	COG	COG5635	Predicted NTPase, NACHT family domain	NA