UHGV-2066055

Genome information

Genome length 38,491 bps

CDS count 61

Completeness 96.65% (high-quality)

geNomad score 0.9650

Prediction confidence Confident

Genome information
Genome ID	UHGV-2066055
vOTU ID	vOTU-009703
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029398\|Ga0242820_100035\|provirus_64683_103173
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.65% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9650
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.33
Jumbo phage	No

Genome content
Genome length	38,491 bps
GC content	40.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	94.28%
Average CDS length	599.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2066055_1	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-2066055_1	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2066055_1	UniRef90	UniRef90_F3AAT6	BRCT domain-containing protein	NA
UHGV-2066055_1	eggNOG-mapper	1314.HKU360_00546	helicase involved in DNA repair and perhaps also replication	NA
UHGV-2066055_1	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2066055_1	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2066055_1	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-2066055_1	COG	COG1199	Rad3-related DNA helicase DinG	NA
UHGV-2066055_1	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-2066055_2	eggNOG-mapper	755731.Clo1100_1139	NA	NA
UHGV-2066055_2	Structural annotation	PF18899, NF007603, COG3586	NA	NA
UHGV-2066055_3	UniRef90	UniRef90_UPI001EDCD030	carboxylate--amine ligase	NA
UHGV-2066055_3	eggNOG-mapper	1519439.JPJG01000008_gene1194	NA	NA
UHGV-2066055_4	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2066055_4	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2066055_4	UniRef90	UniRef90_D0GMY5	Toxin-antitoxin system, toxin component, HicA family	NA
UHGV-2066055_4	eggNOG-mapper	908340.HMPREF9406_2560	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2066055_4	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2066055_4	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2066055_4	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2066055_5	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2066055_5	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2066055_5	UniRef90	UniRef90_G1VMP2	HicB-like domain-containing protein	NA
UHGV-2066055_5	eggNOG-mapper	908340.HMPREF9406_2561	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-2066055_5	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2066055_5	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2066055_5	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2066055_6	PHROG	phrog_1220	head protein	head and packaging
UHGV-2066055_6	UniRef90	UniRef90_A0A2X0ZY62	Phage structural protein, truncation	NA
UHGV-2066055_6	eggNOG-mapper	1145276.T479_12190	NA	NA
UHGV-2066055_6	Structural annotation	PF16569, PF21567	NA	NA
UHGV-2066055_7	PHROG	phrog_538	minor tail protein	tail
UHGV-2066055_7	UniRef90	UniRef90_UPI001EDD956C	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2066055_7	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-2066055_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2066055_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2066055_8	PHROG	phrog_36410	NA	unknown function
UHGV-2066055_8	UniRef90	UniRef90_UPI001EE0B5EC	phage tail family protein	NA
UHGV-2066055_8	eggNOG-mapper	641112.ACOK01000108_gene1808	Phage tail protein	NA
UHGV-2066055_8	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2066055_8	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-2066055_9	KOfam	K16461	CEP135, CEP4; centrosomal protein CEP135	NA
UHGV-2066055_9	PHROG	phrog_5218	NA	unknown function
UHGV-2066055_9	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-2066055_9	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-2066055_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2066055_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2066055_9	Structural annotation	COG5280	NA	NA
UHGV-2066055_11	PHROG	phrog_88	major tail protein	tail
UHGV-2066055_11	UniRef90	UniRef90_A0A1U7M6D4	Phage major tail protein	NA
UHGV-2066055_11	eggNOG-mapper	1403313.AXBR01000002_gene4319	phage major tail protein, phi13 family	NA
UHGV-2066055_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2066055_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2066055_12	Structural annotation	PF05657	NA	NA
UHGV-2066055_13	Structural annotation	TIGR01725	NA	NA
UHGV-2066055_14	UniRef90	UniRef90_UPI001E39516D	head-tail adaptor protein	NA
UHGV-2066055_14	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-2066055_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2066055_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2066055_15	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-2066055_15	eggNOG-mapper	1536769.P40081_01085	NA	NA
UHGV-2066055_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2066055_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-2066055_16	UniRef90	UniRef90_A0A6N2XDQ6	Phage capsid family protein	NA
UHGV-2066055_16	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-2066055_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2066055_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2066055_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2066055_16	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2066055_17	KOfam	K06904	NA	NA
UHGV-2066055_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2066055_17	UniRef90	UniRef90_A0A6N2XFH7	Caudovirus prohead protease	NA
UHGV-2066055_17	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-2066055_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2066055_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2066055_17	COG	COG3740	Phage head maturation protease	NA
UHGV-2066055_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2066055_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-2066055_20	UniRef90	UniRef90_A0A6N2XDR5	Phage portal protein	NA
UHGV-2066055_20	eggNOG-mapper	293826.Amet_2412	Portal protein	NA
UHGV-2066055_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2066055_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2066055_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2066055_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2066055_21	UniRef90	UniRef90_A0A6N2XFJ0	Phage Terminase	NA
UHGV-2066055_21	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-2066055_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2066055_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2066055_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2066055_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2066055_22	PHROG	phrog_1066	NA	unknown function
UHGV-2066055_24	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-2066055_24	UniRef90	UniRef90_UPI001E4EE971	AAA family ATPase	NA
UHGV-2066055_24	eggNOG-mapper	457396.CSBG_01044	HNH endonuclease	NA
UHGV-2066055_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2066055_24	Pfam	PF13671	AAA domain	AAA_33
UHGV-2066055_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2066055_25	PHROG	phrog_24267	NA	unknown function
UHGV-2066055_25	UniRef90	UniRef90_A0A4U8Q5B5	Baseplate wedge subunit and tail pin	NA
UHGV-2066055_25	eggNOG-mapper	469596.HMPREF9488_01321	tail collar domain protein	NA
UHGV-2066055_25	COG	COG4675	Phage tail collar domain	NA
UHGV-2066055_26	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2066055_28	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2066055_28	UniRef90	UniRef90_UPI001AEB7946	transposase	NA
UHGV-2066055_28	eggNOG-mapper	44251.PDUR_04490	transposase activity	NA
UHGV-2066055_28	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2066055_28	Structural annotation	PF07141	NA	NA
UHGV-2066055_29	PHROG	phrog_8781	endolysin	lysis
UHGV-2066055_29	UniRef90	UniRef90_A0A6N2XDQ2	CHAP domain protein	NA
UHGV-2066055_29	eggNOG-mapper	1235796.C815_01769	hydrolase, family 25	NA
UHGV-2066055_29	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-2066055_29	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2066055_29	Structural annotation	PF08460, PF06940, COG3942	NA	NA
UHGV-2066055_30	PHROG	phrog_4105	NA	unknown function
UHGV-2066055_30	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-2066055_31	PHROG	phrog_263	holin	lysis
UHGV-2066055_31	UniRef90	UniRef90_A0A6N2XEK9	Phage lysis protein, holin	NA
UHGV-2066055_31	eggNOG-mapper	1121344.JHZO01000004_gene1372	SPP1 phage holin	NA
UHGV-2066055_31	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2066055_31	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2066055_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2066055_32	UniRef90	UniRef90_A0A6N2XDS2	Sigma-70, region 4	NA
UHGV-2066055_32	eggNOG-mapper	1321779.HMPREF1984_01313	NA	NA
UHGV-2066055_32	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2066055_32	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2066055_40	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2066055_40	PHROG	phrog_216	integrase	integration and excision
UHGV-2066055_40	UniRef90	UniRef90_G1VXJ6	Tyr recombinase domain-containing protein	NA
UHGV-2066055_40	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-2066055_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2066055_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2066055_40	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-2066055_41	PHROG	phrog_20730	NA	unknown function
UHGV-2066055_41	eggNOG-mapper	1211817.CCAT010000053_gene2117	NA	NA
UHGV-2066055_42	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2066055_42	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2066055_42	UniRef90	UniRef90_UPI001D07E6A9	site-specific DNA-methyltransferase	NA
UHGV-2066055_42	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-2066055_42	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-2066055_42	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2066055_42	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2066055_42	Structural annotation	NF000058	NA	NA
UHGV-2066055_43	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2066055_43	UniRef90	UniRef90_R6UVL5	DNA methylase family protein	NA
UHGV-2066055_43	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-2066055_43	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2066055_43	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2066055_43	Structural annotation	PF04851, PF16203, MF_01821, NF003426, COG0553	NA	NA
UHGV-2066055_44	UniRef90	UniRef90_A0A318KPZ6	E2/UBC family protein D	NA
UHGV-2066055_44	Structural annotation	PF14460, TIGR03737	NA	NA
UHGV-2066055_46	KOfam	K21029	moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]	NA
UHGV-2066055_46	UniRef90	UniRef90_UPI001E4B518F	ThiF family adenylyltransferase	NA
UHGV-2066055_46	eggNOG-mapper	428127.EUBDOL_01242	ThiF family	NA
UHGV-2066055_46	Pfam	PF00899	ThiF family	ThiF
UHGV-2066055_46	COG	COG0476	Molybdopterin or thiamine biosynthesis adenylyltransferase	NA
UHGV-2066055_46	Structural annotation	PF00899, MF_03049, TIGR03736, COG0476	NA	NA
UHGV-2066055_48	Structural annotation	PF02768, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-2066055_50	Structural annotation	PF07453	NA	NA
UHGV-2066055_51	KOfam	K19170	dndC; DNA sulfur modification protein DndC	NA
UHGV-2066055_51	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2066055_51	UniRef90	UniRef90_UPI001EDFBCDC	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2066055_51	eggNOG-mapper	742727.HMPREF9447_00582	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2066055_51	PADLOC	SspD_00001	SspD	SSP
UHGV-2066055_51	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2066055_51	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2066055_51	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-2066055_52	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2066055_52	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-2066055_52	eggNOG-mapper	908340.HMPREF9406_2599	NA	NA
UHGV-2066055_52	Structural annotation	PF21578	NA	NA
UHGV-2066055_54	PHROG	phrog_22529	NA	unknown function
UHGV-2066055_54	UniRef90	UniRef90_A0A6N2XEX9	3D domain protein	NA
UHGV-2066055_54	eggNOG-mapper	33035.JPJF01000037_gene2909	3D domain	NA
UHGV-2066055_54	Pfam	PF06725	3D domain	3D
UHGV-2066055_54	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2066055_54	Structural annotation	PF06725, COG3584	NA	NA
UHGV-2066055_59	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2066055_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2066055_59	UniRef90	UniRef90_G1VMI9	HTH cro/C1-type domain-containing protein	NA
UHGV-2066055_59	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-2066055_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2066055_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2066055_59	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2066055_60	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2066055_60	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2066055_60	UniRef90	UniRef90_G1VMI8	HTH cro/C1-type domain-containing protein	NA
UHGV-2066055_60	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-2066055_60	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2066055_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2066055_61	KOfam	K14059	int; integrase	NA
UHGV-2066055_61	PHROG	phrog_1	integrase	integration and excision
UHGV-2066055_61	UniRef90	UniRef90_G1VMI7	Tyr recombinase domain-containing protein	NA
UHGV-2066055_61	eggNOG-mapper	698758.AXY_01580	Phage integrase family	NA
UHGV-2066055_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2066055_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2066055_61	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA