UHGV-2066581

Genome information

Genome length 37,515 bps

CDS count 60

Completeness 84.56% (medium-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-2066581
vOTU ID	vOTU-016908
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029380\|Ga0243900_1000562\|provirus_10025_47539
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.74
Jumbo phage	No

Genome content
Genome length	37,515 bps
GC content	47.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.53%
Average CDS length	562.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2066581_2	UniRef90	UniRef90_G0VPB1	Prophage LambdaCh01	NA
UHGV-2066581_2	eggNOG-mapper	1064535.MELS_1067	NA	NA
UHGV-2066581_2	Structural annotation	PF02805	NA	NA
UHGV-2066581_3	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-2066581_3	PHROG	phrog_15286	NA	unknown function
UHGV-2066581_3	UniRef90	UniRef90_A0A2S0M7T2	Damage-inducible protein D	NA
UHGV-2066581_3	eggNOG-mapper	1131451.O1K_18831	BRO family, N-terminal domain	NA
UHGV-2066581_3	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-2066581_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2066581_3	COG	COG3617	Prophage antirepressor	NA
UHGV-2066581_3	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-2066581_4	UniRef90	UniRef90_A0A6N7W2D5	SWIM-type domain-containing protein	NA
UHGV-2066581_4	eggNOG-mapper	525254.HMPREF0072_1328	Swim zinc finger domain protein	NA
UHGV-2066581_5	PHROG	phrog_26910	NA	unknown function
UHGV-2066581_5	eggNOG-mapper	536232.CLM_1686	NA	NA
UHGV-2066581_5	Structural annotation	PF05800	NA	NA
UHGV-2066581_6	PHROG	phrog_87	metallo-protease	other
UHGV-2066581_6	UniRef90	UniRef90_A0A2A2IMI7	Peptidase_M78 domain-containing protein	NA
UHGV-2066581_6	eggNOG-mapper	1449126.JQKL01000069_gene3621	IrrE N-terminal-like domain	NA
UHGV-2066581_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2066581_6	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2066581_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2066581_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2066581_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2066581_7	UniRef90	UniRef90_A0A1M6WP79	Helix-turn-helix	NA
UHGV-2066581_7	eggNOG-mapper	1280706.AUJE01000003_gene2286	Transcriptional	NA
UHGV-2066581_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2066581_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2066581_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2066581_8	UniRef90	UniRef90_UPI00047DC3F8	helix-turn-helix transcriptional regulator	NA
UHGV-2066581_8	eggNOG-mapper	272626.lin2421	sequence-specific DNA binding	NA
UHGV-2066581_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2066581_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2066581_9	PHROG	phrog_31924	NA	unknown function
UHGV-2066581_9	Structural annotation	COG3831	NA	NA
UHGV-2066581_12	PHROG	phrog_35740	NA	unknown function
UHGV-2066581_13	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-2066581_13	UniRef90	UniRef90_S7J916	Helix-turn-helix domain protein	NA
UHGV-2066581_13	eggNOG-mapper	1273103.NM10_02387	Helix-turn-helix XRE-family like proteins	NA
UHGV-2066581_13	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2066581_13	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-2066581_13	Structural annotation	PF13560, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-2066581_14	UniRef90	UniRef90_A0A1C5TEV4	DNA binding domain, excisionase family	NA
UHGV-2066581_14	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2066581_14	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2066581_15	PHROG	phrog_25045	NA	unknown function
UHGV-2066581_15	UniRef90	UniRef90_G0VPC2	LysM domain-containing protein	NA
UHGV-2066581_15	eggNOG-mapper	1064535.MELS_1078	LysM domain	NA
UHGV-2066581_15	Pfam	PF01476	LysM domain	LysM
UHGV-2066581_15	COG	COG1388	LysM repeat	NA
UHGV-2066581_15	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-2066581_16	PHROG	phrog_4074	NA	unknown function
UHGV-2066581_16	eggNOG-mapper	1232428.CAVO010000003_gene1016	NA	NA
UHGV-2066581_18	PHROG	phrog_32878	NA	unknown function
UHGV-2066581_18	Structural annotation	NF041588	NA	NA
UHGV-2066581_19	PHROG	phrog_11947	NA	unknown function
UHGV-2066581_21	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2066581_21	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2066581_21	UniRef90	UniRef90_G0VPC5	Cobyrinic acid ac-diamide synthase	NA
UHGV-2066581_21	eggNOG-mapper	1064535.MELS_1081	AAA domain	NA
UHGV-2066581_21	Pfam	PF13614	AAA domain	AAA_31
UHGV-2066581_21	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2066581_21	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2066581_22	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2066581_22	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2066581_22	UniRef90	UniRef90_S7HSP3	ParB domain-containing protein	NA
UHGV-2066581_22	eggNOG-mapper	1273103.NM10_02327	ParB-like nuclease domain	NA
UHGV-2066581_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2066581_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2066581_22	Structural annotation	PF14072, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2066581_23	PHROG	phrog_37395	NA	unknown function
UHGV-2066581_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2066581_26	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-2066581_26	eggNOG-mapper	1273103.NM10_02312	NA	NA
UHGV-2066581_26	Structural annotation	PF21578	NA	NA
UHGV-2066581_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2066581_28	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-2066581_28	eggNOG-mapper	936572.HMPREF1148_0670	NA	NA
UHGV-2066581_30	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-2066581_30	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-2066581_30	eggNOG-mapper	1273103.NM10_02282	NA	NA
UHGV-2066581_30	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2066581_30	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-2066581_31	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-2066581_31	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-2066581_31	UniRef90	UniRef90_A0A2S0M817	Terminase	NA
UHGV-2066581_31	eggNOG-mapper	1064535.MELS_1091	Phage terminase large subunit (GpA)	NA
UHGV-2066581_31	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-2066581_31	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-2066581_31	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-2066581_31	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-2066581_31	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-2066581_32	PHROG	phrog_118	head-tail adaptor	connector
UHGV-2066581_32	UniRef90	UniRef90_UPI00073EF5B2	NA	NA
UHGV-2066581_32	eggNOG-mapper	1064535.MELS_1092	NA	NA
UHGV-2066581_32	Pfam	PF19645	NA	DUF6148
UHGV-2066581_32	Structural annotation	PF19645	NA	NA
UHGV-2066581_33	PHROG	phrog_21	portal protein	head and packaging
UHGV-2066581_33	UniRef90	UniRef90_G0VPD7	Phage portal protein	NA
UHGV-2066581_33	eggNOG-mapper	1273103.NM10_02267	Phage portal protein	NA
UHGV-2066581_33	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-2066581_33	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-2066581_33	COG	COG5511	Phage capsid protein	NA
UHGV-2066581_33	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-2066581_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2066581_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2066581_34	UniRef90	UniRef90_S7J8Y4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2066581_34	eggNOG-mapper	1064535.MELS_1094	Clp protease	NA
UHGV-2066581_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2066581_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2066581_34	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-2066581_35	PHROG	phrog_49	head decoration	head and packaging
UHGV-2066581_35	UniRef90	UniRef90_UPI00073F9C7C	head decoration protein	NA
UHGV-2066581_35	eggNOG-mapper	1064535.MELS_1095	Bacteriophage lambda head decoration protein D	NA
UHGV-2066581_35	Structural annotation	PF02924, COG5471	NA	NA
UHGV-2066581_36	PHROG	phrog_29	major head protein	head and packaging
UHGV-2066581_36	UniRef90	UniRef90_UPI00073E3456	major capsid protein	NA
UHGV-2066581_36	eggNOG-mapper	1064535.MELS_1096	Phage major capsid protein E	NA
UHGV-2066581_36	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2066581_36	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-2066581_37	PHROG	phrog_30475	NA	unknown function
UHGV-2066581_38	PHROG	phrog_2551	minor tail protein	tail
UHGV-2066581_38	UniRef90	UniRef90_A0A1H0P7E1	ATP-binding sugar transporter	NA
UHGV-2066581_38	eggNOG-mapper	1064535.MELS_1098	NA	NA
UHGV-2066581_38	Structural annotation	PF13856	NA	NA
UHGV-2066581_39	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-2066581_39	UniRef90	UniRef90_UPI0018C7933C	phage tail protein	NA
UHGV-2066581_39	eggNOG-mapper	1064535.MELS_1099	Prophage minor tail protein Z (GPZ)	NA
UHGV-2066581_39	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-2066581_39	Structural annotation	PF06763	NA	NA
UHGV-2066581_40	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-2066581_40	eggNOG-mapper	1064535.MELS_1100	NA	NA
UHGV-2066581_40	Structural annotation	PF08873, COG5003	NA	NA
UHGV-2066581_41	PHROG	phrog_4089	NA	unknown function
UHGV-2066581_42	KOfam	K06907	NA	NA
UHGV-2066581_42	PHROG	phrog_23	tail sheath	tail
UHGV-2066581_42	UniRef90	UniRef90_A0A316QEM2	Phage tail protein	NA
UHGV-2066581_42	eggNOG-mapper	1064535.MELS_1102	COG3497 Phage tail sheath protein FI	NA
UHGV-2066581_42	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-2066581_42	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-2066581_43	KOfam	K06908	NA	NA
UHGV-2066581_43	PHROG	phrog_55	head closure	connector
UHGV-2066581_43	UniRef90	UniRef90_S7J3W7	Phage major tail tube protein	NA
UHGV-2066581_43	eggNOG-mapper	1273103.NM10_02217	tail tube protein	NA
UHGV-2066581_43	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-2066581_43	COG	COG3498	Phage tail tube protein FII	NA
UHGV-2066581_43	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-2066581_44	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-2066581_44	UniRef90	UniRef90_A0A075KG58	Mu-like prophage FluMu protein gp41	NA
UHGV-2066581_44	eggNOG-mapper	484770.UFO1_1707	NA	NA
UHGV-2066581_44	Structural annotation	PF10109	NA	NA
UHGV-2066581_45	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-2066581_45	UniRef90	UniRef90_A0A2S0MA97	Phage tail tape measure protein	NA
UHGV-2066581_45	eggNOG-mapper	1064535.MELS_1105	Phage-related minor tail protein	NA
UHGV-2066581_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2066581_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2066581_45	COG	COG5283	Phage-related tail protein	NA
UHGV-2066581_45	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-2066581_46	PHROG	phrog_46	tail protein	tail
UHGV-2066581_46	UniRef90	UniRef90_G0VPF0	Phage Tail Protein X	NA
UHGV-2066581_46	eggNOG-mapper	1064535.MELS_1106	Phage Tail Protein X	NA
UHGV-2066581_46	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-2066581_46	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-2066581_46	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-2066581_47	KOfam	K06905	NA	NA
UHGV-2066581_47	PHROG	phrog_52	tail protein	tail
UHGV-2066581_47	UniRef90	UniRef90_G0VPF1	Putative phage regulatory protein	NA
UHGV-2066581_47	eggNOG-mapper	1064535.MELS_1107	COG3500 Phage protein D	NA
UHGV-2066581_47	COG	COG3500	NA	NA
UHGV-2066581_47	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-2066581_48	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-2066581_48	UniRef90	UniRef90_G0VPF2	Prophage MuMc02	NA
UHGV-2066581_48	eggNOG-mapper	1064535.MELS_1108	Phage baseplate assembly protein V	NA
UHGV-2066581_48	Pfam	PF18946	GpV Apex motif	Apex
UHGV-2066581_48	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-2066581_48	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-2066581_48	Structural annotation	PF05606, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-2066581_49	PHROG	phrog_76	tail protein	tail
UHGV-2066581_49	UniRef90	UniRef90_UPI0011C8292A	phage tail protein	NA
UHGV-2066581_49	eggNOG-mapper	1064535.MELS_1109	Phage P2 GpU	NA
UHGV-2066581_49	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-2066581_49	COG	COG3499	NA	NA
UHGV-2066581_49	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-2066581_50	KOfam	K06903	NA	NA
UHGV-2066581_50	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-2066581_50	UniRef90	UniRef90_A0A6I2UI30	GPW_gp25 domain-containing protein	NA
UHGV-2066581_50	eggNOG-mapper	1064535.MELS_1110	GPW Gp25 family protein	NA
UHGV-2066581_50	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2066581_50	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-2066581_51	PHROG	phrog_6	baseplate protein	tail
UHGV-2066581_51	UniRef90	UniRef90_A0A1M6SJW0	Phage-related baseplate assembly protein	NA
UHGV-2066581_51	eggNOG-mapper	1273103.NM10_08064	Baseplate J-like protein	NA
UHGV-2066581_51	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2066581_51	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-2066581_51	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-2066581_52	PHROG	phrog_48	tail protein	tail
UHGV-2066581_52	UniRef90	UniRef90_UPI00073F9104	phage tail protein I	NA
UHGV-2066581_52	eggNOG-mapper	1273103.NM10_08069	Phage tail protein (Tail_P2_I)	NA
UHGV-2066581_52	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-2066581_52	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-2066581_52	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2066581_52	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-2066581_53	PHROG	phrog_7037	tail fiber protein	tail
UHGV-2066581_53	UniRef90	UniRef90_UPI0018C70641	phage tail protein	NA
UHGV-2066581_53	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2066581_53	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2066581_53	Structural annotation	PF12571	NA	NA
UHGV-2066581_54	KOfam	K14059	int; integrase	NA
UHGV-2066581_54	PHROG	phrog_1	integrase	integration and excision
UHGV-2066581_54	UniRef90	UniRef90_A0A1M6NZU6	Site-specific recombinase XerD	NA
UHGV-2066581_54	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-2066581_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2066581_54	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2066581_54	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2066581_57	PHROG	phrog_199	holin	lysis
UHGV-2066581_57	UniRef90	UniRef90_G0VPG2	Prophage LambdaSa04 protein	NA
UHGV-2066581_57	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-2066581_57	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2066581_57	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2066581_57	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2066581_57	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2066581_58	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2066581_58	PHROG	phrog_435	endolysin	lysis
UHGV-2066581_58	UniRef90	UniRef90_A0A1M6NZ70	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2066581_58	eggNOG-mapper	1064535.MELS_1119	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2066581_58	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2066581_58	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2066581_58	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA