UHGV-2066582

Genome information

vOTU vOTU-022019

Genome length 28,130 bps

CDS count 32

Completeness 80.75% (medium-quality)

geNomad score 0.9499

Prediction confidence Confident

Genome information
Genome ID	UHGV-2066582
vOTU ID	vOTU-022019
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029380\|Ga0243900_1001091
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9499
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.73
Jumbo phage	No

Genome content
Genome length	28,130 bps
GC content	54.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	88.67%
Average CDS length	780.84 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2066582_1	PHROG	phrog_199	holin	lysis
UHGV-2066582_1	UniRef90	UniRef90_R5AT18	Toxin secretion/phage lysis holin	NA
UHGV-2066582_1	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-2066582_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2066582_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2066582_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2066582_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2066582_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2066582_2	PHROG	phrog_5182	endolysin	lysis
UHGV-2066582_2	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-2066582_2	eggNOG-mapper	573061.Clocel_3960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2066582_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2066582_2	Pfam	PF00395	S-layer homology domain	SLH
UHGV-2066582_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2066582_2	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2066582_3	Structural annotation	PF00629, NF033675	NA	NA
UHGV-2066582_4	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-2066582_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2066582_5	PHROG	phrog_6616	tail protein	tail
UHGV-2066582_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2066582_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2066582_7	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2066582_7	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-2066582_7	COG	COG1511	NA	NA
UHGV-2066582_8	PHROG	phrog_706	NA	unknown function
UHGV-2066582_8	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-2066582_8	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2066582_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2066582_8	Structural annotation	PF06854	NA	NA
UHGV-2066582_9	PHROG	phrog_11299	NA	unknown function
UHGV-2066582_9	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2066582_9	Structural annotation	PF10666	NA	NA
UHGV-2066582_10	PHROG	phrog_3099	NA	unknown function
UHGV-2066582_10	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-2066582_10	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-2066582_11	PHROG	phrog_3266	tail completion	connector
UHGV-2066582_11	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2066582_11	Structural annotation	PF12691	NA	NA
UHGV-2066582_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2066582_12	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-2066582_12	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2066582_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2066582_12	Structural annotation	PF11114	NA	NA
UHGV-2066582_13	PHROG	phrog_3366	NA	unknown function
UHGV-2066582_13	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2066582_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2066582_14	eggNOG-mapper	33035.JPJF01000106_gene3131	NA	NA
UHGV-2066582_15	PHROG	phrog_267	major head protein	head and packaging
UHGV-2066582_15	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-2066582_15	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2066582_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2066582_16	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-2066582_16	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-2066582_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2066582_16	Structural annotation	PF06810	NA	NA
UHGV-2066582_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2066582_17	UniRef90	UniRef90_A0A355KVT5	Phage capsid protein (Fragment)	NA
UHGV-2066582_17	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-2066582_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2066582_17	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-2066582_17	COG	COG2369	NA	NA
UHGV-2066582_17	Structural annotation	PF06152, PF18812	NA	NA
UHGV-2066582_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-2066582_18	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-2066582_18	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2066582_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2066582_19	PHROG	phrog_1233	NA	unknown function
UHGV-2066582_19	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-2066582_19	Structural annotation	PF13058	NA	NA
UHGV-2066582_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2066582_20	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2066582_20	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-2066582_20	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2066582_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2066582_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2066582_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2066582_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2066582_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-2066582_20	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2066582_21	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2066582_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2066582_22	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-2066582_22	Pfam	PF07374	NA	DUF1492
UHGV-2066582_22	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2066582_23	PHROG	phrog_3136	NA	unknown function
UHGV-2066582_23	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-2066582_23	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-2066582_23	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2066582_23	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-2066582_24	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2066582_24	UniRef90	UniRef90_A0A1C6JA96	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2066582_24	eggNOG-mapper	1048834.TC41_1868	NA	NA
UHGV-2066582_24	Pfam	PF14359	NA	DUF4406
UHGV-2066582_24	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2066582_25	PHROG	phrog_1029	NA	unknown function
UHGV-2066582_25	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-2066582_26	KOfam	K07448	mrr; restriction system protein	NA
UHGV-2066582_26	PHROG	phrog_19856	NA	unknown function
UHGV-2066582_26	UniRef90	UniRef90_A0A416R8P0	Restriction endonuclease	NA
UHGV-2066582_26	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-2066582_26	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2066582_26	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-2066582_26	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-2066582_27	Structural annotation	PF21227	NA	NA
UHGV-2066582_28	PHROG	phrog_5783	NA	unknown function
UHGV-2066582_28	UniRef90	UniRef90_A0A810Q595	Helicase	NA
UHGV-2066582_28	eggNOG-mapper	445971.ANASTE_00686	NYN domain	NA
UHGV-2066582_28	Pfam	PF01936	NYN domain	NYN
UHGV-2066582_28	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2066582_28	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-2066582_29	PHROG	phrog_5978	NA	unknown function
UHGV-2066582_29	UniRef90	UniRef90_A0A372UZA0	Fic family protein	NA
UHGV-2066582_29	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-2066582_29	Pfam	PF02661	Fic/DOC family	Fic
UHGV-2066582_29	COG	COG3177	Fic family protein	NA
UHGV-2066582_29	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-2066582_30	KOfam	K14059	int; integrase	NA
UHGV-2066582_30	PHROG	phrog_1	integrase	integration and excision
UHGV-2066582_30	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-2066582_30	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-2066582_30	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2066582_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2066582_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2066582_30	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2066582_31	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-2066582_31	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2066582_31	UniRef90	UniRef90_R5AWG7	Putative endonuclease	NA
UHGV-2066582_31	eggNOG-mapper	693746.OBV_19760	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-2066582_31	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-2066582_31	COG	COG4748	NA	NA
UHGV-2066582_31	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-2066582_32	KOfam	K02510	hpaI, hpcH; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]	NA
UHGV-2066582_32	UniRef90	UniRef90_R5B8D9	HpcH_HpaI domain-containing protein	NA
UHGV-2066582_32	eggNOG-mapper	1121324.CLIT_10c01820	Belongs to the HpcH HpaI aldolase family	NA
UHGV-2066582_32	Pfam	PF03328	HpcH/HpaI aldolase/citrate lyase family	HpcH_HpaI
UHGV-2066582_32	COG	COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	NA