UHGV-2067432

Genome information

Genome length 22,732 bps

CDS count 33

Completeness 59.73% (medium-quality)

geNomad score 0.9691

Prediction confidence Confident

Genome information
Genome ID	UHGV-2067432
vOTU ID	vOTU-032534
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029376\|Ga0243980_1001309
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9691
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.44
Jumbo phage	No

Genome content
Genome length	22,732 bps
GC content	43.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	93.31%
Average CDS length	647.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2067432_1	KOfam	K14059	int; integrase	NA
UHGV-2067432_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2067432_1	UniRef90	UniRef90_A0A1C6EL66	Integrase	NA
UHGV-2067432_1	eggNOG-mapper	1203606.HMPREF1526_02099	Belongs to the 'phage' integrase family	NA
UHGV-2067432_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2067432_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2067432_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2067432_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2067432_2	eggNOG-mapper	1410670.JHXF01000019_gene65	NA	NA
UHGV-2067432_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2067432_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2067432_4	UniRef90	UniRef90_E9SCJ6	Peptidase S24-like protein	NA
UHGV-2067432_4	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-2067432_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2067432_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2067432_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2067432_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2067432_5	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-2067432_5	UniRef90	UniRef90_R6R5I8	HTH cro/C1-type domain-containing protein	NA
UHGV-2067432_5	eggNOG-mapper	1033744.CAEL01000029_gene1308	NA	NA
UHGV-2067432_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2067432_5	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-2067432_6	Structural annotation	PF10743	NA	NA
UHGV-2067432_9	PHROG	phrog_38338	NA	unknown function
UHGV-2067432_9	eggNOG-mapper	1514668.JOOA01000001_gene227	NA	NA
UHGV-2067432_10	PHROG	phrog_8470	NA	unknown function
UHGV-2067432_10	UniRef90	UniRef90_UPI0019175B9C	PcfJ domain-containing protein	NA
UHGV-2067432_10	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-2067432_10	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2067432_10	Structural annotation	PF14284	NA	NA
UHGV-2067432_12	PHROG	phrog_15609	NA	unknown function
UHGV-2067432_12	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-2067432_12	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2067432_12	Pfam	PF11300	NA	DUF3102
UHGV-2067432_12	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2067432_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2067432_13	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-2067432_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2067432_13	Structural annotation	PF05565	NA	NA
UHGV-2067432_14	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2067432_14	UniRef90	UniRef90_UPI001A9B3ECC	AAA family ATPase	NA
UHGV-2067432_14	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-2067432_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-2067432_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2067432_15	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2067432_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2067432_15	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-2067432_15	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-2067432_15	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2067432_15	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2067432_15	Pfam	PF18766	SWI2/SNF2 ATPase	SWI2_SNF2
UHGV-2067432_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2067432_15	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2067432_15	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2067432_16	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2067432_16	UniRef90	UniRef90_UPI000A4B1865	VRR-NUC domain-containing protein	NA
UHGV-2067432_16	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-2067432_16	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2067432_16	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-2067432_17	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2067432_17	UniRef90	UniRef90_UPI0006852132	NA	NA
UHGV-2067432_17	eggNOG-mapper	1410670.JHXF01000015_gene2272	NA	NA
UHGV-2067432_17	Pfam	PF05037	NA	DUF669
UHGV-2067432_17	Structural annotation	PF05037, NF004948	NA	NA
UHGV-2067432_18	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2067432_18	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2067432_18	UniRef90	UniRef90_A0A348ZC79	DNA primase	NA
UHGV-2067432_18	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-2067432_18	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2067432_18	Pfam	PF19263	NA	DUF5906
UHGV-2067432_18	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2067432_18	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2067432_18	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2067432_18	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-2067432_23	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2067432_23	UniRef90	UniRef90_A0A3A6H5B0	Restriction alleviation protein, Lar family	NA
UHGV-2067432_23	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2067432_25	Structural annotation	PF07374	NA	NA
UHGV-2067432_26	eggNOG-mapper	41431.PCC8801_3064	NA	NA
UHGV-2067432_27	Structural annotation	PF15968	NA	NA
UHGV-2067432_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2067432_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2067432_28	UniRef90	UniRef90_A0A374HNN6	Terminase small subunit	NA
UHGV-2067432_28	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-2067432_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2067432_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2067432_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2067432_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2067432_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2067432_29	UniRef90	UniRef90_R6RCX9	Phage terminase large subunit PBSX family	NA
UHGV-2067432_29	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-2067432_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2067432_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2067432_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2067432_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-2067432_30	UniRef90	UniRef90_R6RJD0	Putative phage minor capsid protein	NA
UHGV-2067432_30	eggNOG-mapper	1122918.KB907248_gene4503	NA	NA
UHGV-2067432_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2067432_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2067432_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2067432_31	UniRef90	UniRef90_UPI000A270255	polymorphic toxin type 50 domain-containing protein	NA
UHGV-2067432_31	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-2067432_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2067432_31	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-2067432_31	COG	COG2369	NA	NA
UHGV-2067432_33	UniRef90	UniRef90_UPI0019572D92	NA	NA
UHGV-2067432_33	eggNOG-mapper	411461.DORFOR_01165	NA	NA