UHGV-2067643

Genome information

Genome length 30,432 bps

CDS count 50

Completeness 72.12% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-2067643
vOTU ID	vOTU-041756
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029404\|Ga0243824_100466\|provirus_359_30790
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.82
Jumbo phage	No

Genome content
Genome length	30,432 bps
GC content	38.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.77%
Average CDS length	567.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2067643_1	PHROG	phrog_6988	NA	unknown function
UHGV-2067643_1	UniRef90	UniRef90_UPI001C1E503F	TIR domain-containing protein	NA
UHGV-2067643_1	eggNOG-mapper	203119.Cthe_2456	NA	NA
UHGV-2067643_1	PADLOC	ThsB1_00002	TIR-like	Thoeris
UHGV-2067643_1	Pfam	PF08937	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
UHGV-2067643_1	Structural annotation	PF08937, MF_03036, TIGR03646, COG0758	NA	NA
UHGV-2067643_2	PHROG	phrog_419	NA	unknown function
UHGV-2067643_2	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-2067643_2	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-2067643_2	Structural annotation	PF14083	NA	NA
UHGV-2067643_3	PHROG	phrog_7395	NA	unknown function
UHGV-2067643_3	UniRef90	UniRef90_UPI001C1E4E62	NA	NA
UHGV-2067643_3	eggNOG-mapper	886882.PPSC2_c2958	NA	NA
UHGV-2067643_3	Pfam	PF14015	NA	DUF4231
UHGV-2067643_3	NCBIFam	NF033634.1	SLATT domain-containing protein	NA
UHGV-2067643_3	Structural annotation	PF14015, NF033634	NA	NA
UHGV-2067643_4	PHROG	phrog_87	metallo-protease	other
UHGV-2067643_4	UniRef90	UniRef90_UPI001D07A9BA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2067643_4	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-2067643_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2067643_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2067643_5	UniRef90	UniRef90_UPI001D002C2A	NA	NA
UHGV-2067643_5	eggNOG-mapper	411469.EUBHAL_01996	NA	NA
UHGV-2067643_6	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-2067643_6	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2067643_6	UniRef90	UniRef90_A0A174FGC3	Type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-2067643_6	eggNOG-mapper	411469.EUBHAL_01995	Addiction module toxin, RelE StbE family	NA
UHGV-2067643_6	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-2067643_6	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-2067643_6	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-2067643_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2067643_7	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2067643_7	UniRef90	UniRef90_A0A3C1J235	HTH cro/C1-type domain-containing protein	NA
UHGV-2067643_7	eggNOG-mapper	1121289.JHVL01000079_gene1186	sequence-specific DNA binding	NA
UHGV-2067643_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2067643_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2067643_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2067643_7	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2067643_8	UniRef90	UniRef90_UPI0004654DF5	helix-turn-helix domain-containing protein	NA
UHGV-2067643_8	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-2067643_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2067643_8	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-2067643_11	PHROG	phrog_9607	NA	unknown function
UHGV-2067643_11	eggNOG-mapper	1378168.N510_03161	NA	NA
UHGV-2067643_11	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-2067643_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2067643_12	UniRef90	UniRef90_A0A415UCP1	XRE family transcriptional regulator	NA
UHGV-2067643_12	eggNOG-mapper	1449343.JQLQ01000002_gene686	NA	NA
UHGV-2067643_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2067643_12	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-2067643_13	Structural annotation	PF10922	NA	NA
UHGV-2067643_15	PHROG	phrog_3777	NA	unknown function
UHGV-2067643_15	UniRef90	UniRef90_A0A415G6V1	NA	NA
UHGV-2067643_15	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-2067643_15	Pfam	PF12957	NA	DUF3846
UHGV-2067643_15	Structural annotation	PF12957	NA	NA
UHGV-2067643_16	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2067643_16	UniRef90	UniRef90_A0A415G8D6	Recombinase	NA
UHGV-2067643_16	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-2067643_16	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2067643_16	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2067643_16	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2067643_16	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2067643_17	PHROG	phrog_674	NA	unknown function
UHGV-2067643_17	UniRef90	UniRef90_UPI001ADDD22D	NA	NA
UHGV-2067643_17	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-2067643_17	Pfam	PF07083	NA	DUF1351
UHGV-2067643_17	Structural annotation	PF07083	NA	NA
UHGV-2067643_18	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2067643_18	UniRef90	UniRef90_A0A415G8D8	Phage recombination protein Bet	NA
UHGV-2067643_18	eggNOG-mapper	536233.CLO_0507	Phage recombination protein Bet	NA
UHGV-2067643_18	Pfam	PF03837	RecT family	RecT
UHGV-2067643_18	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-2067643_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2067643_18	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2067643_19	PHROG	phrog_15768	NA	unknown function
UHGV-2067643_19	UniRef90	UniRef90_A0A1H8R574	Helix-turn-helix domain-containing protein	NA
UHGV-2067643_19	eggNOG-mapper	742740.HMPREF9474_03492	DnaD domain protein	NA
UHGV-2067643_19	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2067643_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2067643_19	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-2067643_20	PHROG	phrog_17690	NA	unknown function
UHGV-2067643_20	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-2067643_20	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-2067643_21	UniRef90	UniRef90_A0A415UCM6	NA	NA
UHGV-2067643_21	eggNOG-mapper	1235799.C818_04211	NA	NA
UHGV-2067643_21	Pfam	PF04448	NA	DUF551
UHGV-2067643_23	PHROG	phrog_1455	NA	unknown function
UHGV-2067643_23	eggNOG-mapper	1567013.A0A0A7RTM3_9CAUD	NA	NA
UHGV-2067643_23	Pfam	PF21793	NA	DUF6877
UHGV-2067643_24	PHROG	phrog_6568	NA	unknown function
UHGV-2067643_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2067643_25	UniRef90	UniRef90_UPI001F372FD7	sigma-70 region 4 domain-containing protein	NA
UHGV-2067643_25	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-2067643_25	Structural annotation	PF02996	NA	NA
UHGV-2067643_26	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2067643_26	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2067643_26	UniRef90	UniRef90_UPI001ADDE3D0	ParA family protein	NA
UHGV-2067643_26	eggNOG-mapper	457405.FSDG_01237	plasmid maintenance	NA
UHGV-2067643_26	Pfam	PF13614	AAA domain	AAA_31
UHGV-2067643_26	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2067643_26	Structural annotation	PF01656, MF_00355, NF041283, COG1192	NA	NA
UHGV-2067643_27	PHROG	phrog_6264	NA	unknown function
UHGV-2067643_27	eggNOG-mapper	596329.HMPREF0631_1368	NA	NA
UHGV-2067643_29	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-2067643_29	UniRef90	UniRef90_A0A415UCQ6	Terminase	NA
UHGV-2067643_29	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-2067643_29	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2067643_29	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2067643_29	COG	COG5484	NA	NA
UHGV-2067643_29	Structural annotation	NF040601, COG5484	NA	NA
UHGV-2067643_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2067643_30	PHROG	phrog_10250	NA	unknown function
UHGV-2067643_30	UniRef90	UniRef90_UPI001C1142EA	PBSX family phage terminase large subunit	NA
UHGV-2067643_30	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-2067643_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2067643_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2067643_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2067643_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2067643_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-2067643_31	UniRef90	UniRef90_A0A416N3J2	Phage portal protein	NA
UHGV-2067643_31	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-2067643_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2067643_31	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2067643_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2067643_32	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-2067643_32	UniRef90	UniRef90_A0A1C5ZQ59	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-2067643_32	eggNOG-mapper	1235800.C819_00488	Phage Mu protein F like protein	NA
UHGV-2067643_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2067643_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2067643_32	COG	COG2369	NA	NA
UHGV-2067643_32	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2067643_33	eggNOG-mapper	411460.RUMTOR_01296	NA	NA
UHGV-2067643_34	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-2067643_34	UniRef90	UniRef90_A0A373CYS5	Bro-N domain-containing protein	NA
UHGV-2067643_34	eggNOG-mapper	573061.Clocel_3584	Prophage antirepressor	NA
UHGV-2067643_34	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2067643_34	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2067643_34	Structural annotation	PF02498, COG3617	NA	NA
UHGV-2067643_35	PHROG	phrog_872	NA	unknown function
UHGV-2067643_35	eggNOG-mapper	411902.CLOBOL_06322	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-2067643_35	dbAPIS	APIS052	NA	NA
UHGV-2067643_37	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2067643_37	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-2067643_37	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-2067643_38	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2067643_38	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-2067643_38	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-2067643_38	Pfam	PF14265	NA	DUF4355
UHGV-2067643_38	Structural annotation	PF14265	NA	NA
UHGV-2067643_39	PHROG	phrog_422	major head protein	head and packaging
UHGV-2067643_39	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-2067643_39	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-2067643_39	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2067643_40	PHROG	phrog_2724	NA	unknown function
UHGV-2067643_40	UniRef90	UniRef90_UPI001645E209	Rho termination factor N-terminal domain-containing protein	NA
UHGV-2067643_40	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-2067643_40	COG	COG0261	Ribosomal protein L21	NA
UHGV-2067643_40	Structural annotation	PF07498	NA	NA
UHGV-2067643_41	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2067643_41	UniRef90	UniRef90_A0A173WLV7	Phage gp6-like head-tail connector protein	NA
UHGV-2067643_41	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-2067643_41	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2067643_41	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2067643_42	PHROG	phrog_2168	NA	unknown function
UHGV-2067643_42	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-2067643_42	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2067643_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2067643_43	UniRef90	UniRef90_UPI00189D840F	HK97 gp10 family phage protein	NA
UHGV-2067643_43	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2067643_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2067643_43	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2067643_43	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2067643_44	PHROG	phrog_78	tail terminator	connector
UHGV-2067643_44	eggNOG-mapper	1499683.CCFF01000014_gene3904	NA	NA
UHGV-2067643_44	Structural annotation	PF05657	NA	NA
UHGV-2067643_45	PHROG	phrog_158	major tail protein	tail
UHGV-2067643_45	UniRef90	UniRef90_A0A415FLM9	Phage tail protein	NA
UHGV-2067643_45	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-2067643_45	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-2067643_45	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2067643_46	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2067643_46	UniRef90	UniRef90_UPI0011DE12FE	NA	NA
UHGV-2067643_46	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-2067643_46	Structural annotation	PF19591	NA	NA
UHGV-2067643_47	PHROG	phrog_2066	NA	unknown function
UHGV-2067643_47	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-2067643_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2067643_49	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-2067643_49	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-2067643_49	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2067643_49	COG	COG5283	Phage-related tail protein	NA
UHGV-2067643_50	KOfam	K00784	rnz; ribonuclease Z [EC:3.1.26.11]	NA
UHGV-2067643_50	UniRef90	UniRef90_R5GB75	Lactamase_B domain-containing protein	NA
UHGV-2067643_50	eggNOG-mapper	411469.EUBHAL_01992	NA	NA
UHGV-2067643_50	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2067643_50	dbAPIS	APIS054	NA	NA
UHGV-2067643_50	COG	COG1234	Ribonuclease BN, tRNA processing enzyme	NA