UHGV-2067816

Genome information

Genome length 37,101 bps

CDS count 53

Completeness 99.98% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-2067816
vOTU ID	vOTU-009065
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029362\|Ga0243852_1000332\|provirus_8558_45658
BioSample	SAMN05971563
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.85
Jumbo phage	No

Genome content
Genome length	37,101 bps
GC content	61.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	95.57%
Average CDS length	675.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2067816_1	KOfam	K14059	int; integrase	NA
UHGV-2067816_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2067816_1	UniRef90	UniRef90_A0A810Q0Y2	Tyr recombinase domain-containing protein	NA
UHGV-2067816_1	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-2067816_1	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2067816_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2067816_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2067816_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2067816_1	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-2067816_2	eggNOG-mapper	1232453.BAIF02000097_gene2773	EXOIII	NA
UHGV-2067816_2	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-2067816_2	Structural annotation	PF18899, NF007603, COG3586	NA	NA
UHGV-2067816_3	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-2067816_3	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2067816_3	UniRef90	UniRef90_A0A1Y4IFM6	BRCT domain-containing protein	NA
UHGV-2067816_3	eggNOG-mapper	596330.HMPREF0628_0145	3' exoribonuclease, RNase T-like	NA
UHGV-2067816_3	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2067816_3	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2067816_3	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-2067816_3	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-2067816_3	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-2067816_5	UniRef90	UniRef90_A0A1Y3ZTC9	HTH cro/C1-type domain-containing protein	NA
UHGV-2067816_5	eggNOG-mapper	693746.OBV_19770	sequence-specific DNA binding	NA
UHGV-2067816_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2067816_5	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-2067816_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2067816_10	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2067816_10	UniRef90	UniRef90_A0A1S8D1C1	HTH cro/C1-type domain-containing protein	NA
UHGV-2067816_10	eggNOG-mapper	391625.PPSIR1_14145	Helix-turn-helix XRE-family like proteins	NA
UHGV-2067816_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2067816_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2067816_10	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2067816_11	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-2067816_11	UniRef90	UniRef90_A0A1Y3RCD0	DNA-binding protein	NA
UHGV-2067816_11	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-2067816_11	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2067816_11	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2067816_11	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-2067816_12	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-2067816_12	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-2067816_12	Structural annotation	PF09035, TIGR01764	NA	NA
UHGV-2067816_14	Structural annotation	PF21327	NA	NA
UHGV-2067816_16	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2067816_16	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-2067816_16	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-2067816_16	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2067816_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2067816_16	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-2067816_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2067816_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2067816_17	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-2067816_17	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-2067816_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2067816_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2067816_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-2067816_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2067816_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2067816_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2067816_18	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-2067816_18	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-2067816_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-2067816_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2067816_18	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2067816_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2067816_19	PHROG	phrog_27290	NA	unknown function
UHGV-2067816_19	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-2067816_19	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-2067816_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2067816_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2067816_19	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2067816_22	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2067816_22	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2067816_22	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2067816_22	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2067816_22	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-2067816_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2067816_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2067816_22	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2067816_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2067816_27	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-2067816_27	Structural annotation	PF01446	NA	NA
UHGV-2067816_28	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-2067816_28	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-2067816_28	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-2067816_28	Structural annotation	PF14205	NA	NA
UHGV-2067816_29	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2067816_29	UniRef90	UniRef90_UPI00058F420D	HNH endonuclease	NA
UHGV-2067816_29	eggNOG-mapper	1007096.BAGW01000012_gene2372	HNH endonuclease	NA
UHGV-2067816_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2067816_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2067816_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2067816_30	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-2067816_30	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-2067816_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2067816_30	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2067816_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2067816_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2067816_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2067816_31	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-2067816_31	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-2067816_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2067816_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2067816_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2067816_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2067816_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-2067816_33	UniRef90	UniRef90_UPI001958B72F	phage portal protein	NA
UHGV-2067816_33	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-2067816_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2067816_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2067816_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2067816_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2067816_34	PHROG	phrog_16951	NA	unknown function
UHGV-2067816_34	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-2067816_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2067816_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-2067816_35	UniRef90	UniRef90_UPI00195B1FEC	phage major capsid protein	NA
UHGV-2067816_35	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-2067816_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2067816_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2067816_35	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2067816_36	UniRef90	UniRef90_UPI0019597439	head-tail connector protein	NA
UHGV-2067816_36	eggNOG-mapper	693746.OBV_20060	NA	NA
UHGV-2067816_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2067816_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2067816_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2067816_38	UniRef90	UniRef90_UPI0008712616	HK97 gp10 family phage protein	NA
UHGV-2067816_38	eggNOG-mapper	1158604.I591_01763	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2067816_38	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2067816_39	Structural annotation	PF05657	NA	NA
UHGV-2067816_40	PHROG	phrog_2175	protein with Ig domain	other
UHGV-2067816_40	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-2067816_40	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2067816_41	Structural annotation	PF17388	NA	NA
UHGV-2067816_42	eggNOG-mapper	1219626.HMPREF1639_07460	NA	NA
UHGV-2067816_43	PHROG	phrog_23464	NA	unknown function
UHGV-2067816_43	UniRef90	UniRef90_A0A3R6SN90	Phage tail tape measure protein	NA
UHGV-2067816_43	eggNOG-mapper	1226322.HMPREF1545_00124	Phage tail tape measure protein TP901	NA
UHGV-2067816_43	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2067816_43	Structural annotation	PF20155, COG5280	NA	NA
UHGV-2067816_44	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-2067816_44	eggNOG-mapper	552396.HMPREF0863_01445	NA	NA
UHGV-2067816_44	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-2067816_45	PHROG	phrog_3558	tail protein	tail
UHGV-2067816_45	UniRef90	UniRef90_A0A810Q1Y2	Prophage_tail domain-containing protein	NA
UHGV-2067816_45	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-2067816_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2067816_45	COG	COG4926	Phage-related protein	NA
UHGV-2067816_45	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-2067816_46	PHROG	phrog_372	tail protein	tail
UHGV-2067816_46	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-2067816_46	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-2067816_46	Pfam	PF05895	NA	DUF859
UHGV-2067816_46	COG	COG4675	Phage tail collar domain	NA
UHGV-2067816_46	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-2067816_47	Structural annotation	PF10651, COG3330	NA	NA
UHGV-2067816_48	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-2067816_48	PHROG	phrog_5240	tail fiber protein	tail
UHGV-2067816_48	eggNOG-mapper	1121090.KB894688_gene1798	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-2067816_48	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2067816_48	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2067816_50	PHROG	phrog_199	holin	lysis
UHGV-2067816_50	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-2067816_50	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2067816_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2067816_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2067816_50	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2067816_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2067816_51	PHROG	phrog_918	NA	unknown function
UHGV-2067816_51	UniRef90	UniRef90_UPI001F22DD3C	NA	NA
UHGV-2067816_51	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-2067816_51	Pfam	PF19791	NA	DUF6275
UHGV-2067816_51	Structural annotation	PF19791	NA	NA
UHGV-2067816_52	PHROG	phrog_435	endolysin	lysis
UHGV-2067816_52	UniRef90	UniRef90_UPI001BF1661D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2067816_52	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2067816_52	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2067816_52	Pfam	PF05036	SPOR domain	SPOR
UHGV-2067816_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2067816_52	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-2067816_53	KOfam	K06406	spoVAD; stage V sporulation protein AD	NA
UHGV-2067816_53	UniRef90	UniRef90_A0A351MZB9	Stage V sporulation protein AD	NA
UHGV-2067816_53	eggNOG-mapper	1226322.HMPREF1545_01535	Stage V sporulation protein AD (SpoVAD)	NA
UHGV-2067816_53	Pfam	PF07451	Stage V sporulation protein AD (SpoVAD)	SpoVAD
UHGV-2067816_53	NCBIFam	NF006160.0	stage V sporulation protein AD	NA
UHGV-2067816_53	COG	COG0183	Acetyl-CoA acetyltransferase	NA