UHGV-2068432

Genome information

vOTU vOTU-020242

Genome length 28,388 bps

CDS count 28

Completeness 67.52% (medium-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-2068432
vOTU ID	vOTU-020242
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029412\|Ga0243915_100144\|provirus_102959_131346
BioSample	SAMN05971627
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.67
Jumbo phage	No

Genome content
Genome length	28,388 bps
GC content	42.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	88.44%
Average CDS length	899.89 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2068432_1	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-2068432_1	UniRef90	UniRef90_UPI001C3B84AE	ORF6N domain-containing protein	NA
UHGV-2068432_1	eggNOG-mapper	476272.RUMHYD_02879	ORF6N domain	NA
UHGV-2068432_1	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2068432_1	Structural annotation	PF10543, PF15188, MF_01506, TIGR02681, COG3646	NA	NA
UHGV-2068432_2	UniRef90	UniRef90_UPI001D0E5D20	CopG family transcriptional regulator	NA
UHGV-2068432_2	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-2068432_2	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-2068432_3	KOfam	K07273	acm; lysozyme	NA
UHGV-2068432_3	PHROG	phrog_6745	endolysin	lysis
UHGV-2068432_3	UniRef90	UniRef90_A0A412ERJ4	NlpC/P60 domain-containing protein (Fragment)	NA
UHGV-2068432_3	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-2068432_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2068432_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2068432_3	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2068432_3	Structural annotation	PF01183, PF05382, NF003627, TIGR02219, COG3757	NA	NA
UHGV-2068432_4	PHROG	phrog_199	holin	lysis
UHGV-2068432_4	UniRef90	UniRef90_A0A414SEM5	Holin	NA
UHGV-2068432_4	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-2068432_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2068432_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2068432_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2068432_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2068432_5	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-2068432_5	PHROG	phrog_1	integrase	integration and excision
UHGV-2068432_5	UniRef90	UniRef90_A5ZPK3	Site-specific recombinase, phage integrase family	NA
UHGV-2068432_5	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2068432_5	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2068432_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2068432_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2068432_5	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2068432_8	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-2068432_9	PHROG	phrog_32322	NA	unknown function
UHGV-2068432_9	UniRef90	UniRef90_UPI001C0F3A29	PF13754 domain-containing protein	NA
UHGV-2068432_9	eggNOG-mapper	1232446.BAIE02000011_gene1581	NA	NA
UHGV-2068432_9	Pfam	PF13754	NA	Big_3_4
UHGV-2068432_9	Structural annotation	PF13754	NA	NA
UHGV-2068432_10	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-2068432_10	PHROG	phrog_11157	NA	unknown function
UHGV-2068432_10	UniRef90	UniRef90_UPI001C0EC4DD	Ig-like domain-containing protein	NA
UHGV-2068432_10	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-2068432_10	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-2068432_10	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-2068432_10	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-2068432_10	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-2068432_10	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-2068432_11	PHROG	phrog_6616	tail protein	tail
UHGV-2068432_11	UniRef90	UniRef90_UPI001D07A50C	collagen-like protein	NA
UHGV-2068432_11	eggNOG-mapper	59241.E7DNB8_BPDP1	peptidoglycan catabolic process	NA
UHGV-2068432_11	Structural annotation	PF05113, PF03921, PF13884, NF033848, COG3500	NA	NA
UHGV-2068432_12	PHROG	phrog_1194	NA	unknown function
UHGV-2068432_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2068432_13	PHROG	phrog_28918	NA	unknown function
UHGV-2068432_13	UniRef90	UniRef90_A0A174LLY7	Phage-related protein	NA
UHGV-2068432_13	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-2068432_13	COG	COG5412	Phage-related protein	NA
UHGV-2068432_14	PHROG	phrog_706	NA	unknown function
UHGV-2068432_14	UniRef90	UniRef90_UPI001D099D88	bacteriophage Gp15 family protein	NA
UHGV-2068432_14	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-2068432_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2068432_14	Structural annotation	PF06854	NA	NA
UHGV-2068432_15	PHROG	phrog_11299	NA	unknown function
UHGV-2068432_15	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-2068432_15	Structural annotation	PF10666	NA	NA
UHGV-2068432_16	PHROG	phrog_3099	NA	unknown function
UHGV-2068432_16	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-2068432_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2068432_17	PHROG	phrog_3266	tail completion	connector
UHGV-2068432_17	UniRef90	UniRef90_UPI001C86C58C	chloramphenicol resistance protein	NA
UHGV-2068432_17	eggNOG-mapper	1235792.C808_05372	NA	NA
UHGV-2068432_17	Structural annotation	PF12691	NA	NA
UHGV-2068432_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2068432_18	UniRef90	UniRef90_UPI001D084F02	minor capsid protein	NA
UHGV-2068432_18	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2068432_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2068432_18	Structural annotation	PF11114	NA	NA
UHGV-2068432_19	PHROG	phrog_3366	NA	unknown function
UHGV-2068432_19	Pfam	PF20536	NA	DUF6751
UHGV-2068432_19	Structural annotation	PF20536	NA	NA
UHGV-2068432_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2068432_20	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-2068432_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-2068432_21	UniRef90	UniRef90_UPI00189A09FD	phage major capsid protein	NA
UHGV-2068432_21	eggNOG-mapper	999413.HMPREF1094_00215	Phage capsid family	NA
UHGV-2068432_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2068432_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2068432_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2068432_21	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2068432_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2068432_22	UniRef90	UniRef90_UPI001D080C73	phage scaffolding protein	NA
UHGV-2068432_22	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-2068432_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2068432_22	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2068432_23	PHROG	phrog_27009	NA	unknown function
UHGV-2068432_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2068432_24	UniRef90	UniRef90_UPI001D09004C	phage minor capsid protein	NA
UHGV-2068432_24	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-2068432_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2068432_24	COG	COG2369	NA	NA
UHGV-2068432_24	Structural annotation	PF06152, PF12636	NA	NA
UHGV-2068432_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-2068432_25	UniRef90	UniRef90_A0A352BM02	Phage portal protein	NA
UHGV-2068432_25	eggNOG-mapper	999413.HMPREF1094_00220	phage minor capsid protein	NA
UHGV-2068432_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2068432_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2068432_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2068432_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2068432_26	UniRef90	UniRef90_A0A352BM03	PBSX family phage terminase large subunit	NA
UHGV-2068432_26	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-2068432_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2068432_26	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2068432_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2068432_27	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2068432_27	UniRef90	UniRef90_UPI001D08595A	terminase small subunit	NA
UHGV-2068432_27	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-2068432_27	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2068432_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2068432_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2068432_27	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-2068432_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2068432_28	UniRef90	UniRef90_UPI000931D7F9	RNA polymerase subunit sigma-70	NA
UHGV-2068432_28	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-2068432_28	Structural annotation	PF02996	NA	NA