UHGV-2068606

Genome information

Genome length 37,302 bps

CDS count 42

Completeness 82.63% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-2068606
vOTU ID	vOTU-025240
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029417\|Ga0243409_100111\|provirus_54291_91592
BioSample	SAMEA2582131
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.8
Jumbo phage	No

Genome content
Genome length	37,302 bps
GC content	42.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.96%
Average CDS length	838.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2068606_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2068606_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2068606_2	UniRef90	UniRef90_A0A412RJN1	Helix-turn-helix transcriptional regulator	NA
UHGV-2068606_2	eggNOG-mapper	1268240.ATFI01000007_gene448	Peptidase S24-like	NA
UHGV-2068606_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2068606_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2068606_2	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2068606_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2068606_3	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2068606_3	UniRef90	UniRef90_E2N829	Phage antirepressor protein	NA
UHGV-2068606_3	eggNOG-mapper	1268240.ATFI01000007_gene446	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-2068606_3	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2068606_3	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2068606_3	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-2068606_3	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2068606_4	UniRef90	UniRef90_A0A412RJF0	DNA-binding protein	NA
UHGV-2068606_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2068606_4	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2068606_4	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2068606_5	eggNOG-mapper	1268240.ATFI01000007_gene444	NA	NA
UHGV-2068606_7	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2068606_7	UniRef90	UniRef90_A0A0P0GQT0	Bacteriophage Lambda NinG protein	NA
UHGV-2068606_7	eggNOG-mapper	1268240.ATFI01000007_gene442	Bacteriophage Lambda NinG protein	NA
UHGV-2068606_7	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-2068606_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2068606_7	Structural annotation	PF05766	NA	NA
UHGV-2068606_9	PHROG	phrog_19572	NA	unknown function
UHGV-2068606_9	UniRef90	UniRef90_A0A0P0FE30	NA	NA
UHGV-2068606_9	eggNOG-mapper	272559.BF9343_2737	COG NOG14445 non supervised orthologous group	NA
UHGV-2068606_9	Pfam	PF14902	NA	DUF4494
UHGV-2068606_9	Structural annotation	PF14902	NA	NA
UHGV-2068606_10	eggNOG-mapper	1268240.ATFI01000007_gene440	NA	NA
UHGV-2068606_10	Structural annotation	PF05144, MF_00408, TIGR01629, COG2946	NA	NA
UHGV-2068606_11	UniRef90	UniRef90_A0A412RJF5	NA	NA
UHGV-2068606_11	eggNOG-mapper	1236504.HMPREF2132_00040	NA	NA
UHGV-2068606_11	Pfam	PF11325	NA	DUF3127
UHGV-2068606_11	Structural annotation	PF11325, MF_00720, NF004476, COG2965	NA	NA
UHGV-2068606_12	UniRef90	UniRef90_F3PKH6	Conserved domain protein	NA
UHGV-2068606_12	eggNOG-mapper	1268240.ATFI01000007_gene438	NA	NA
UHGV-2068606_12	Structural annotation	PF00679, MF_00707, NF010078, COG4492	NA	NA
UHGV-2068606_13	PHROG	phrog_3007	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2068606_13	UniRef90	UniRef90_A0A412RJC8	DNA_pol3_beta_3 domain-containing protein	NA
UHGV-2068606_13	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-2068606_13	Structural annotation	PF02767, TIGR00663, COG0592	NA	NA
UHGV-2068606_14	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2068606_14	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2068606_14	UniRef90	UniRef90_I9PVD0	Methyltransferase	NA
UHGV-2068606_14	eggNOG-mapper	1268240.ATFI01000007_gene432	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2068606_14	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2068606_14	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2068606_14	COG	COG0863	DNA modification methylase	NA
UHGV-2068606_14	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2068606_15	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2068606_15	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-2068606_15	UniRef90	UniRef90_A0A0P0GGX9	Methyltransferase	NA
UHGV-2068606_15	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-2068606_15	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-2068606_15	COG	COG0863	DNA modification methylase	NA
UHGV-2068606_17	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2068606_17	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2068606_17	UniRef90	UniRef90_I9TD60	PAPS_reduct domain-containing protein	NA
UHGV-2068606_17	eggNOG-mapper	762982.HMPREF9442_01221	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2068606_17	PADLOC	BrxP_00001	BrxP	BREX
UHGV-2068606_17	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2068606_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2068606_17	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-2068606_18	PHROG	phrog_874	NA	unknown function
UHGV-2068606_18	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-2068606_18	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2068606_19	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-2068606_20	eggNOG-mapper	411476.BACOVA_04649	NA	NA
UHGV-2068606_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2068606_21	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2068606_21	UniRef90	UniRef90_A0A412RJL1	HNH endonuclease	NA
UHGV-2068606_21	eggNOG-mapper	266762.HQ36_02070	HNH endonuclease	NA
UHGV-2068606_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2068606_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2068606_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2068606_23	UniRef90	UniRef90_A0A412RJB6	Terminase large subunit	NA
UHGV-2068606_23	eggNOG-mapper	266762.HQ36_02085	Phage Terminase	NA
UHGV-2068606_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2068606_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2068606_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2068606_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2068606_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-2068606_24	UniRef90	UniRef90_A0A642PTT0	Phage portal protein	NA
UHGV-2068606_24	eggNOG-mapper	1236514.BAKL01000051_gene3699	Phage portal protein	NA
UHGV-2068606_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2068606_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2068606_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2068606_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2068606_25	KOfam	K06904	NA	NA
UHGV-2068606_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2068606_25	UniRef90	UniRef90_A0A642PU71	HK97 family phage prohead protease	NA
UHGV-2068606_25	eggNOG-mapper	1236514.BAKL01000051_gene3697	Caudovirus prohead serine protease	NA
UHGV-2068606_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2068606_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2068606_25	COG	COG3740	Phage head maturation protease	NA
UHGV-2068606_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2068606_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-2068606_26	UniRef90	UniRef90_A0A642PVH3	Phage major capsid protein	NA
UHGV-2068606_26	eggNOG-mapper	1236514.BAKL01000051_gene3695	Phage capsid family	NA
UHGV-2068606_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2068606_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2068606_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2068606_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2068606_27	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2068606_27	UniRef90	UniRef90_A0A412RJB0	Phage gp6-like head-tail connector protein	NA
UHGV-2068606_27	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2068606_27	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2068606_27	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2068606_28	PHROG	phrog_25	head closure Hc1	connector
UHGV-2068606_28	UniRef90	UniRef90_A0A412RJC5	Head-tail adaptor protein	NA
UHGV-2068606_28	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2068606_28	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2068606_28	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2068606_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2068606_29	UniRef90	UniRef90_UPI0004685E7E	HK97 gp10 family phage protein	NA
UHGV-2068606_29	eggNOG-mapper	1268240.ATFI01000007_gene415	NA	NA
UHGV-2068606_29	Structural annotation	TIGR01725	NA	NA
UHGV-2068606_30	UniRef90	UniRef90_UPI000D113639	NA	NA
UHGV-2068606_30	eggNOG-mapper	1347393.HG726026_gene2618	NA	NA
UHGV-2068606_30	Structural annotation	PF11367, COG5003	NA	NA
UHGV-2068606_31	PHROG	phrog_1407	major tail protein	tail
UHGV-2068606_31	UniRef90	UniRef90_A0A0N7IEG0	Phage major tail protein 2	NA
UHGV-2068606_31	eggNOG-mapper	1268240.ATFI01000007_gene413	Phage tail tube protein	NA
UHGV-2068606_31	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2068606_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2068606_32	eggNOG-mapper	1268240.ATFI01000007_gene412	NA	NA
UHGV-2068606_33	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-2068606_33	UniRef90	UniRef90_UPI001F002A6D	tape measure protein	NA
UHGV-2068606_33	eggNOG-mapper	1268240.ATFI01000007_gene411	tape measure	NA
UHGV-2068606_33	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2068606_33	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2068606_33	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2068606_33	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2068606_34	eggNOG-mapper	1268240.ATFI01000007_gene410	NA	NA
UHGV-2068606_34	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-2068606_35	PHROG	phrog_24896	NA	unknown function
UHGV-2068606_35	UniRef90	UniRef90_UPI0018A001A1	leucine-rich repeat domain-containing protein	NA
UHGV-2068606_35	eggNOG-mapper	742727.HMPREF9447_00043	NA	NA
UHGV-2068606_35	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2068606_35	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-2068606_35	Structural annotation	PF08757, PF13306, PF02973, PF16397, PF01835, MF_01905, TIGR03503, COG3291	NA	NA
UHGV-2068606_37	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2068606_37	PHROG	phrog_38044	NA	unknown function
UHGV-2068606_37	UniRef90	UniRef90_A0A412IFU6	Collagen-like protein	NA
UHGV-2068606_37	eggNOG-mapper	1236514.BAKL01000034_gene2912	cellulase activity	NA
UHGV-2068606_37	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2068606_37	COG	COG4926	Phage-related protein	NA
UHGV-2068606_37	Structural annotation	NF000797, COG2451	NA	NA
UHGV-2068606_38	PHROG	phrog_32423	NA	unknown function
UHGV-2068606_38	eggNOG-mapper	657309.BXY_05120	NA	NA
UHGV-2068606_39	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2068606_39	PHROG	phrog_894	endolysin	lysis
UHGV-2068606_39	UniRef90	UniRef90_A0A412I9V0	Peptidase M15	NA
UHGV-2068606_39	eggNOG-mapper	1121101.HMPREF1532_02614	Peptidase M15	NA
UHGV-2068606_39	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2068606_39	COG	COG3108	NA	NA
UHGV-2068606_39	Structural annotation	PF08291, COG3108	NA	NA
UHGV-2068606_40	eggNOG-mapper	1347393.HG726021_gene391	NA	NA
UHGV-2068606_42	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2068606_42	PHROG	phrog_1	integrase	integration and excision
UHGV-2068606_42	UniRef90	UniRef90_A0A412RJ82	Tyr recombinase domain-containing protein	NA
UHGV-2068606_42	eggNOG-mapper	1347393.HG726026_gene2633	Arm DNA-binding domain	NA
UHGV-2068606_42	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-2068606_42	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2068606_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2068606_42	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2068606_42	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA