UHGV-2068616

Genome information

Genome length 37,214 bps

CDS count 54

Completeness 99.99% (high-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-2068616
vOTU ID	vOTU-010559
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029388\|Ga0243998_1000270\|provirus_17968_58160
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.99% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.55
Jumbo phage	No

Genome content
Genome length	37,214 bps
GC content	36.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	95.47%
Average CDS length	661.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2068616_1	eggNOG-mapper	633147.Olsu_1237	NA	NA
UHGV-2068616_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2068616_2	PHROG	phrog_435	endolysin	lysis
UHGV-2068616_2	UniRef90	UniRef90_UPI001EE924D3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2068616_2	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-2068616_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2068616_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2068616_2	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-2068616_3	PHROG	phrog_774	NA	unknown function
UHGV-2068616_3	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2068616_4	PHROG	phrog_918	NA	unknown function
UHGV-2068616_4	UniRef90	UniRef90_UPI000E468F85	NA	NA
UHGV-2068616_4	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-2068616_4	Pfam	PF19791	NA	DUF6275
UHGV-2068616_4	Structural annotation	PF19791	NA	NA
UHGV-2068616_5	PHROG	phrog_199	holin	lysis
UHGV-2068616_5	UniRef90	UniRef90_E2NU60	Toxin secretion/phage lysis holin	NA
UHGV-2068616_5	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-2068616_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2068616_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2068616_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2068616_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2068616_6	PHROG	phrog_372	tail protein	tail
UHGV-2068616_6	UniRef90	UniRef90_UPI0006C32325	NA	NA
UHGV-2068616_6	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-2068616_6	Pfam	PF05895	NA	DUF859
UHGV-2068616_6	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-2068616_7	PHROG	phrog_18110	NA	unknown function
UHGV-2068616_7	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-2068616_7	COG	COG4926	Phage-related protein	NA
UHGV-2068616_8	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-2068616_8	UniRef90	UniRef90_I7ARM6	NA	NA
UHGV-2068616_8	eggNOG-mapper	1504823.CCMM01000008_gene1029	NA	NA
UHGV-2068616_8	Structural annotation	PF14874, NF038186	NA	NA
UHGV-2068616_9	PHROG	phrog_15074	NA	unknown function
UHGV-2068616_9	eggNOG-mapper	445974.CLORAM_02919	cellulase activity	NA
UHGV-2068616_9	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2068616_9	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2068616_10	PHROG	phrog_1194	NA	unknown function
UHGV-2068616_10	eggNOG-mapper	1504823.CCMM01000008_gene1031	NA	NA
UHGV-2068616_10	Pfam	PF20458	NA	DUF6711
UHGV-2068616_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2068616_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2068616_11	UniRef90	UniRef90_A0A1C5TVU6	Phage-related minor tail protein	NA
UHGV-2068616_11	eggNOG-mapper	1504823.CCMM01000008_gene1032	phage tail tape measure protein	NA
UHGV-2068616_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2068616_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2068616_12	PHROG	phrog_2066	NA	unknown function
UHGV-2068616_12	eggNOG-mapper	1504823.CCMM01000008_gene1033	NA	NA
UHGV-2068616_13	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2068616_13	UniRef90	UniRef90_UPI000487273D	NA	NA
UHGV-2068616_13	eggNOG-mapper	1504823.CCMM01000008_gene1034	NA	NA
UHGV-2068616_13	Pfam	PF19591	NA	DUF6096
UHGV-2068616_13	Structural annotation	PF19591	NA	NA
UHGV-2068616_14	PHROG	phrog_158	major tail protein	tail
UHGV-2068616_14	UniRef90	UniRef90_A0A1C5TB95	Phage tail protein	NA
UHGV-2068616_14	eggNOG-mapper	1504823.CCMM01000008_gene1035	Phage tail tube protein, TTP	NA
UHGV-2068616_14	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-2068616_14	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2068616_15	PHROG	phrog_78	tail terminator	connector
UHGV-2068616_15	eggNOG-mapper	1504823.CCMM01000008_gene1036	NA	NA
UHGV-2068616_15	Structural annotation	PF05657	NA	NA
UHGV-2068616_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2068616_16	UniRef90	UniRef90_A0A1C5TVK4	Phage protein, HK97 gp10 family	NA
UHGV-2068616_16	eggNOG-mapper	1504823.CCMM01000008_gene1037	NA	NA
UHGV-2068616_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2068616_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2068616_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2068616_17	PHROG	phrog_2168	NA	unknown function
UHGV-2068616_17	eggNOG-mapper	1211844.CBLM010000016_gene1488	NA	NA
UHGV-2068616_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2068616_18	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2068616_18	UniRef90	UniRef90_A0A1C6BLH2	Phage gp6-like head-tail connector protein	NA
UHGV-2068616_18	eggNOG-mapper	1504823.CCMM01000008_gene1039	NA	NA
UHGV-2068616_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2068616_18	Structural annotation	PF05135	NA	NA
UHGV-2068616_19	UniRef90	UniRef90_A0A1C5TAF6	Rho termination factor, N-terminal domain	NA
UHGV-2068616_19	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-2068616_19	Structural annotation	PF07498	NA	NA
UHGV-2068616_20	PHROG	phrog_267	major head protein	head and packaging
UHGV-2068616_20	UniRef90	UniRef90_A0A417IN35	P22 coat protein-protein 5 domain protein	NA
UHGV-2068616_20	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-2068616_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2068616_21	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2068616_21	UniRef90	UniRef90_A0A417IN83	NA	NA
UHGV-2068616_21	eggNOG-mapper	1504823.CCMM01000008_gene1042	NA	NA
UHGV-2068616_21	Pfam	PF14265	NA	DUF4355
UHGV-2068616_21	Structural annotation	PF14265	NA	NA
UHGV-2068616_23	PHROG	phrog_30609	NA	unknown function
UHGV-2068616_23	Structural annotation	PF21485	NA	NA
UHGV-2068616_24	PHROG	phrog_3675	NA	unknown function
UHGV-2068616_24	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-2068616_24	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-2068616_24	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-2068616_24	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-2068616_26	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-2068616_26	UniRef90	UniRef90_A0A1C5T9G1	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-2068616_26	eggNOG-mapper	1504823.CCMM01000008_gene1046	cell adhesion	NA
UHGV-2068616_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2068616_26	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-2068616_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2068616_26	COG	COG2369	NA	NA
UHGV-2068616_26	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2068616_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-2068616_27	UniRef90	UniRef90_A0A417IN69	Phage portal protein	NA
UHGV-2068616_27	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-2068616_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2068616_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2068616_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2068616_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2068616_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2068616_28	UniRef90	UniRef90_A0A417IN81	PBSX family phage terminase large subunit	NA
UHGV-2068616_28	eggNOG-mapper	1504823.CCMM01000008_gene1048	DNA packaging	NA
UHGV-2068616_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2068616_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2068616_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2068616_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2068616_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2068616_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2068616_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2068616_29	UniRef90	UniRef90_A0A6N9L4V4	Terminase small subunit	NA
UHGV-2068616_29	eggNOG-mapper	1504823.CCMM01000008_gene1049	DNA packaging	NA
UHGV-2068616_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2068616_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2068616_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2068616_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2068616_30	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-2068616_30	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2068616_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2068616_30	Structural annotation	PF08281, MF_00674, NF007227, COG1191	NA	NA
UHGV-2068616_33	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-2068616_33	PHROG	phrog_1	integrase	integration and excision
UHGV-2068616_33	UniRef90	UniRef90_E2NU93	Site-specific recombinase, phage integrase family	NA
UHGV-2068616_33	eggNOG-mapper	411460.RUMTOR_01870	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2068616_33	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2068616_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2068616_33	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2068616_33	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2068616_34	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2068616_34	PHROG	phrog_5696	NA	unknown function
UHGV-2068616_34	UniRef90	UniRef90_E2NU94	N6_Mtase domain-containing protein	NA
UHGV-2068616_34	eggNOG-mapper	1245471.PCA10_p0930	N-6 DNA Methylase	NA
UHGV-2068616_34	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2068616_34	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2068616_34	Structural annotation	PF13679, MF_02126, TIGR00497, COG0286	NA	NA
UHGV-2068616_35	PHROG	phrog_22292	NA	unknown function
UHGV-2068616_35	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-2068616_36	PHROG	phrog_4019	NA	unknown function
UHGV-2068616_37	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-2068616_39	PHROG	phrog_4856	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2068616_39	UniRef90	UniRef90_E2NR83	MazG domain-containing protein	NA
UHGV-2068616_39	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-2068616_39	Structural annotation	MF_01019, NF002747, COG0140	NA	NA
UHGV-2068616_40	Structural annotation	PF10656	NA	NA
UHGV-2068616_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2068616_42	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2068616_42	UniRef90	UniRef90_E2NR80	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-2068616_42	eggNOG-mapper	1232449.BAHV02000018_gene1542	Endodeoxyribonuclease RusA	NA
UHGV-2068616_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2068616_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2068616_42	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2068616_43	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2068616_43	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2068616_43	UniRef90	UniRef90_E2NR79	Primase C terminal 2 (PriCT-2)	NA
UHGV-2068616_43	eggNOG-mapper	610130.Closa_1370	Primase C terminal 2 (PriCT-2)	NA
UHGV-2068616_43	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2068616_43	Pfam	PF13481	AAA domain	AAA_25
UHGV-2068616_43	COG	COG3598	RecA-family ATPase	NA
UHGV-2068616_43	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2068616_44	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2068616_44	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2068616_44	UniRef90	UniRef90_E2NR78	Helicase C-terminal domain protein	NA
UHGV-2068616_44	eggNOG-mapper	1232449.BAHV02000008_gene620	helicase superfamily c-terminal domain	NA
UHGV-2068616_44	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2068616_44	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2068616_44	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2068616_44	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2068616_44	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2068616_45	PHROG	phrog_2698	NA	unknown function
UHGV-2068616_45	UniRef90	UniRef90_UPI001F15B425	NA	NA
UHGV-2068616_45	eggNOG-mapper	552396.HMPREF0863_02437	NA	NA
UHGV-2068616_45	Pfam	PF05037	NA	DUF669
UHGV-2068616_45	Structural annotation	PF05037	NA	NA
UHGV-2068616_46	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2068616_46	UniRef90	UniRef90_UPI001E57C8F5	ATP-binding protein	NA
UHGV-2068616_46	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-2068616_46	Pfam	PF13479	AAA domain	AAA_24
UHGV-2068616_46	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2068616_47	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2068616_47	PHROG	phrog_1499	NA	unknown function
UHGV-2068616_47	UniRef90	UniRef90_E2NR75	RecF/RecN/SMC N-terminal domain protein	NA
UHGV-2068616_47	eggNOG-mapper	1214217.ALNF01000014_gene1402	AAA domain	NA
UHGV-2068616_47	Pfam	PF13476	AAA domain	AAA_23
UHGV-2068616_47	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2068616_47	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2068616_51	UniRef90	UniRef90_A0A416DT94	DNA-binding protein	NA
UHGV-2068616_51	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2068616_51	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2068616_52	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2068616_52	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2068616_52	UniRef90	UniRef90_A0A3D1YTA2	Bro-N domain-containing protein (Fragment)	NA
UHGV-2068616_52	eggNOG-mapper	257314.LJ_1455	BRO family, N-terminal domain	NA
UHGV-2068616_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2068616_52	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2068616_52	COG	COG3617	Prophage antirepressor	NA
UHGV-2068616_52	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-2068616_53	UniRef90	UniRef90_A0A3D4T7E0	XRE family transcriptional regulator	NA
UHGV-2068616_53	eggNOG-mapper	768486.EHR_02785	NA	NA
UHGV-2068616_53	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-2068616_54	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2068616_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2068616_54	UniRef90	UniRef90_E2NR67	DNA-binding helix-turn-helix protein	NA
UHGV-2068616_54	eggNOG-mapper	1504823.CCMM01000010_gene1370	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2068616_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2068616_54	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2068616_54	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2068616_54	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA