UHGV-2069358

Genome information

Genome length 37,041 bps

CDS count 51

Completeness 99.90% (high-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-2069358
vOTU ID	vOTU-010701
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029404\|Ga0243824_100218\|provirus_67575_104615
BioSample	SAMN05971531
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.87
Jumbo phage	No

Genome content
Genome length	37,041 bps
GC content	44.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.72%
Average CDS length	661.06 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2069358_3	eggNOG-mapper	1064535.MELS_1120	NA	NA
UHGV-2069358_4	PHROG	phrog_5867	endolysin	lysis
UHGV-2069358_4	UniRef90	UniRef90_A0A346B186	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2069358_4	eggNOG-mapper	484770.UFO1_3058	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2069358_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2069358_4	Structural annotation	MF_04111	NA	NA
UHGV-2069358_5	eggNOG-mapper	568816.Acin_1951	NA	NA
UHGV-2069358_6	PHROG	phrog_4105	NA	unknown function
UHGV-2069358_6	eggNOG-mapper	610130.Closa_0762	NA	NA
UHGV-2069358_8	KOfam	K14059	int; integrase	NA
UHGV-2069358_8	PHROG	phrog_1	integrase	integration and excision
UHGV-2069358_8	UniRef90	UniRef90_A0A1M6NZU6	Site-specific recombinase XerD	NA
UHGV-2069358_8	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-2069358_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2069358_8	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2069358_8	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2069358_9	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2069358_9	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2069358_10	PHROG	phrog_521	tail protein	tail
UHGV-2069358_10	UniRef90	UniRef90_UPI000478E68D	NA	NA
UHGV-2069358_10	eggNOG-mapper	500633.CLOHIR_00382	NA	NA
UHGV-2069358_10	COG	COG3778	NA	NA
UHGV-2069358_10	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2069358_11	PHROG	phrog_6	baseplate protein	tail
UHGV-2069358_11	UniRef90	UniRef90_UPI001D063BBB	baseplate J/gp47 family protein	NA
UHGV-2069358_11	eggNOG-mapper	1123239.KB898628_gene3248	Baseplate J-like protein	NA
UHGV-2069358_11	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2069358_11	COG	COG3299	NA	NA
UHGV-2069358_11	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2069358_12	UniRef90	UniRef90_UPI001D06F821	NA	NA
UHGV-2069358_12	Pfam	PF10934	NA	DUF2634
UHGV-2069358_12	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2069358_12	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-2069358_13	PHROG	phrog_579	NA	unknown function
UHGV-2069358_13	UniRef90	UniRef90_UPI00047CF220	NA	NA
UHGV-2069358_13	eggNOG-mapper	1095747.HMPREF1049_1996	NA	NA
UHGV-2069358_13	Pfam	PF10844	NA	DUF2577
UHGV-2069358_13	Structural annotation	PF10844	NA	NA
UHGV-2069358_14	PHROG	phrog_400	tail protein	tail
UHGV-2069358_14	eggNOG-mapper	1196322.A370_04919	Late control gene D protein	NA
UHGV-2069358_14	COG	COG3500	NA	NA
UHGV-2069358_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2069358_15	PHROG	phrog_5184	NA	unknown function
UHGV-2069358_15	UniRef90	UniRef90_UPI000C0691FE	phage portal protein	NA
UHGV-2069358_15	eggNOG-mapper	97138.C820_00603	LysM domain	NA
UHGV-2069358_15	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2069358_16	PHROG	phrog_7972	NA	unknown function
UHGV-2069358_16	UniRef90	UniRef90_A0A8G0NSD2	Phage tail protein	NA
UHGV-2069358_16	eggNOG-mapper	469617.FUAG_00846	tape measure	NA
UHGV-2069358_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2069358_18	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-2069358_18	UniRef90	UniRef90_A0A162J0C0	Phage portal protein	NA
UHGV-2069358_18	eggNOG-mapper	1095747.HMPREF1049_2003	NA	NA
UHGV-2069358_18	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-2069358_19	PHROG	phrog_365	tail protein	tail
UHGV-2069358_19	UniRef90	UniRef90_UPI000429BBBA	phage tail tube protein	NA
UHGV-2069358_19	eggNOG-mapper	536232.CLM_1667	Phage tail tube protein	NA
UHGV-2069358_19	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2069358_19	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2069358_20	PHROG	phrog_1480	tail sheath	tail
UHGV-2069358_20	UniRef90	UniRef90_A0A7X2XHA8	Phage tail sheath protein	NA
UHGV-2069358_20	eggNOG-mapper	1095747.HMPREF1049_2005	Phage tail sheath C-terminal domain	NA
UHGV-2069358_20	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2069358_20	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2069358_21	PHROG	phrog_525	NA	unknown function
UHGV-2069358_21	Pfam	PF20765	NA	DUF6838
UHGV-2069358_21	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-2069358_22	UniRef90	UniRef90_UPI000410849E	HK97 gp10 family phage protein	NA
UHGV-2069358_22	eggNOG-mapper	1095747.HMPREF1049_2007	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2069358_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2069358_22	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2069358_23	PHROG	phrog_25	head closure Hc1	connector
UHGV-2069358_23	UniRef90	UniRef90_UPI000415E870	phage head closure protein	NA
UHGV-2069358_23	eggNOG-mapper	1285586.H131_21292	Phage head-tail joining protein	NA
UHGV-2069358_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2069358_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2069358_23	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2069358_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2069358_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2069358_24	UniRef90	UniRef90_UPI00041E0DD1	head-tail connector protein	NA
UHGV-2069358_24	eggNOG-mapper	632245.CLP_2916	Phage gp6-like head-tail connector protein	NA
UHGV-2069358_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2069358_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2069358_25	Structural annotation	PF01281	NA	NA
UHGV-2069358_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-2069358_26	UniRef90	UniRef90_UPI000400CBEC	phage major capsid protein	NA
UHGV-2069358_26	eggNOG-mapper	903814.ELI_1299	Phage capsid family	NA
UHGV-2069358_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2069358_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2069358_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2069358_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2069358_27	KOfam	K06904	NA	NA
UHGV-2069358_27	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2069358_27	UniRef90	UniRef90_UPI000415264F	HK97 family phage prohead protease	NA
UHGV-2069358_27	eggNOG-mapper	1285586.H131_21307	Caudovirus prohead serine protease	NA
UHGV-2069358_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2069358_27	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2069358_27	COG	COG3740	Phage head maturation protease	NA
UHGV-2069358_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2069358_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-2069358_28	UniRef90	UniRef90_UPI0003FDC1C6	phage portal protein	NA
UHGV-2069358_28	eggNOG-mapper	742738.HMPREF9460_01364	Portal protein	NA
UHGV-2069358_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2069358_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2069358_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2069358_28	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2069358_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2069358_29	UniRef90	UniRef90_UPI000406183D	terminase large subunit	NA
UHGV-2069358_29	eggNOG-mapper	508419.F8J159_9CAUD	Phage Terminase	NA
UHGV-2069358_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2069358_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2069358_29	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2069358_30	PHROG	phrog_13845	NA	unknown function
UHGV-2069358_30	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-2069358_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2069358_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2069358_31	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2069358_31	UniRef90	UniRef90_A0A352RPP8	HNH endonuclease	NA
UHGV-2069358_31	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-2069358_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2069358_32	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2069358_32	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-2069358_32	UniRef90	UniRef90_A0A3D2NSQ5	Transcriptional regulator	NA
UHGV-2069358_32	eggNOG-mapper	158190.SpiGrapes_0576	NA	NA
UHGV-2069358_32	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2069358_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2069358_32	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2069358_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2069358_32	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-2069358_33	PHROG	phrog_26280	NA	unknown function
UHGV-2069358_33	eggNOG-mapper	485916.Dtox_2225	NA	NA
UHGV-2069358_33	Pfam	PF19448	NA	DUF5986
UHGV-2069358_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2069358_34	UniRef90	UniRef90_A0A346B157	RNA polymerase subunit sigma-70	NA
UHGV-2069358_34	eggNOG-mapper	1111454.HMPREF1250_0269	NA	NA
UHGV-2069358_34	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-2069358_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2069358_35	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2069358_35	UniRef90	UniRef90_A0A1C5T0C1	Holliday junction resolvase	NA
UHGV-2069358_35	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-2069358_35	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2069358_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2069358_35	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2069358_37	PHROG	phrog_954	DNA methyltransferase	other
UHGV-2069358_37	UniRef90	UniRef90_A0A0X8KA97	Methyltransferase	NA
UHGV-2069358_37	eggNOG-mapper	864563.HMPREF9166_0581	methyltransferase	NA
UHGV-2069358_37	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-2069358_37	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-2069358_37	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-2069358_38	PHROG	phrog_6568	NA	unknown function
UHGV-2069358_39	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2069358_39	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2069358_39	UniRef90	UniRef90_UPI001D07AA17	DnaA/Hda family protein	NA
UHGV-2069358_39	eggNOG-mapper	1111454.HMPREF1250_0279	DNA replication protein	NA
UHGV-2069358_39	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2069358_39	Structural annotation	PF01695, MF_00377, NF005378, COG1484	NA	NA
UHGV-2069358_40	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2069358_40	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2069358_40	UniRef90	UniRef90_E2ZAS9	DnaD domain protein	NA
UHGV-2069358_40	eggNOG-mapper	706434.HMPREF9429_00547	DnaD domain protein	NA
UHGV-2069358_40	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2069358_40	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2069358_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2069358_40	Structural annotation	PF07261, PF09681, TIGR01446, TIGR01714, COG3935	NA	NA
UHGV-2069358_41	PHROG	phrog_9403	NA	unknown function
UHGV-2069358_42	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2069358_42	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2069358_42	UniRef90	UniRef90_A0A316M5N2	Recombinase RecT	NA
UHGV-2069358_42	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-2069358_42	Pfam	PF03837	RecT family	RecT
UHGV-2069358_42	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2069358_42	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2069358_42	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2069358_43	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2069358_43	UniRef90	UniRef90_S7HTF0	Phage-type endonuclease	NA
UHGV-2069358_43	eggNOG-mapper	1273103.NM10_01174	YqaJ viral recombinase family protein	NA
UHGV-2069358_43	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2069358_43	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2069358_43	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2069358_43	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2069358_45	PHROG	phrog_14367	NA	unknown function
UHGV-2069358_45	UniRef90	UniRef90_F9MMK8	LysM domain protein	NA
UHGV-2069358_45	eggNOG-mapper	568816.Acin_1254	LysM domain	NA
UHGV-2069358_45	Pfam	PF01476	LysM domain	LysM
UHGV-2069358_45	COG	COG1388	LysM repeat	NA
UHGV-2069358_45	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-2069358_46	UniRef90	UniRef90_UPI00098BCE66	helix-turn-helix domain-containing protein	NA
UHGV-2069358_46	eggNOG-mapper	699218.HMPREF0889_0316	NA	NA
UHGV-2069358_46	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-2069358_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2069358_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2069358_47	UniRef90	UniRef90_UPI001D08154B	helix-turn-helix transcriptional regulator	NA
UHGV-2069358_47	eggNOG-mapper	699218.HMPREF0889_0317	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2069358_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2069358_47	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2069358_47	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2069358_48	PHROG	phrog_87	metallo-protease	other
UHGV-2069358_48	UniRef90	UniRef90_UPI001D0906D8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2069358_48	eggNOG-mapper	1123250.KB908434_gene7	Zn peptidase	NA
UHGV-2069358_48	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2069358_48	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2069358_48	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2069358_49	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-2069358_49	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2069358_49	UniRef90	UniRef90_UPI000685BB22	3'-5' exoribonuclease	NA
UHGV-2069358_49	eggNOG-mapper	888064.HMPREF9088_1738	3' exoribonuclease, RNase T-like	NA
UHGV-2069358_49	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2069358_49	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2069358_49	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-2069358_49	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-2069358_49	Structural annotation	PF00929, MF_00157, NF004844, COG0847	NA	NA
UHGV-2069358_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2069358_50	PHROG	phrog_95	integrase	integration and excision
UHGV-2069358_50	UniRef90	UniRef90_E2ZAU2	Resolvase, N-terminal domain protein	NA
UHGV-2069358_50	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-2069358_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2069358_50	Pfam	PF07508	Recombinase	Recombinase
UHGV-2069358_50	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2069358_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2069358_50	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2069358_51	KOfam	K00831	serC, PSAT1; phosphoserine aminotransferase [EC:2.6.1.52]	NA
UHGV-2069358_51	UniRef90	UniRef90_C9LMC7	Phosphoserine aminotransferase	NA
UHGV-2069358_51	eggNOG-mapper	592028.GCWU000321_00680	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine	NA
UHGV-2069358_51	Pfam	PF00266	Aminotransferase class-V	Aminotran_5
UHGV-2069358_51	NCBIFam	NF003764.0	3-phosphoserine/phosphohydroxythreonine transaminase	NA
UHGV-2069358_51	COG	COG1932	Phosphoserine aminotransferase	NA
UHGV-2069358_51	HAMAP	MF_00160	Phosphoserine aminotransferase [serC]	NA