UHGV-2069537

Genome information

Genome length 38,043 bps

CDS count 62

Completeness 99.41% (high-quality)

geNomad score 0.9641

Prediction confidence Confident

Genome information
Genome ID	UHGV-2069537
vOTU ID	vOTU-077040
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029393\|Ga0243986_1000077\|provirus_59629_116502
BioSample	SAMN05971698
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.41% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9641
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.9
Jumbo phage	No

Genome content
Genome length	38,043 bps
GC content	46.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.98%
Average CDS length	561.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2069537_1	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-2069537_1	UniRef90	UniRef90_A0A0X8VCT6	NlpC/P60 domain-containing protein	NA
UHGV-2069537_1	eggNOG-mapper	411902.CLOBOL_04837	Phage lysozyme	NA
UHGV-2069537_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2069537_1	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-2069537_2	PHROG	phrog_36029	NA	unknown function
UHGV-2069537_2	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-2069537_2	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-2069537_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2069537_3	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2069537_3	UniRef90	UniRef90_UPI001C3C1005	Phage antirepressor KilAC domain-containing protein	NA
UHGV-2069537_3	eggNOG-mapper	568816.Acin_1403	Phage antirepressor protein KilAC domain	NA
UHGV-2069537_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2069537_3	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2069537_3	COG	COG3617	Prophage antirepressor	NA
UHGV-2069537_3	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-2069537_5	UniRef90	UniRef90_UPI0009FACA7C	ribbon-helix-helix protein, CopG family	NA
UHGV-2069537_5	eggNOG-mapper	1105031.HMPREF1141_1146	NA	NA
UHGV-2069537_5	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-2069537_5	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-2069537_6	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-2069537_6	UniRef90	UniRef90_UPI000E47F582	helix-turn-helix domain-containing protein	NA
UHGV-2069537_6	eggNOG-mapper	1196322.A370_04524	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2069537_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2069537_6	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-2069537_8	PHROG	phrog_937	hemolysin	other
UHGV-2069537_8	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-2069537_9	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2069537_9	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-2069537_9	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-2069537_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2069537_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2069537_9	COG	COG4926	Phage-related protein	NA
UHGV-2069537_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2069537_10	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-2069537_12	PHROG	phrog_3639	minor tail protein	tail
UHGV-2069537_12	UniRef90	UniRef90_A0A396NMY3	NA	NA
UHGV-2069537_12	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2069537_12	COG	COG5434	Polygalacturonase	NA
UHGV-2069537_12	Structural annotation	PF10651, PF05475, NF033675, COG4935	NA	NA
UHGV-2069537_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2069537_13	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-2069537_13	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-2069537_13	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2069537_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-2069537_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2069537_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2069537_14	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-2069537_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2069537_15	PHROG	phrog_706	NA	unknown function
UHGV-2069537_15	UniRef90	UniRef90_UPI001D122605	bacteriophage Gp15 family protein	NA
UHGV-2069537_15	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-2069537_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2069537_15	Structural annotation	PF06854	NA	NA
UHGV-2069537_16	Structural annotation	PF20378	NA	NA
UHGV-2069537_17	PHROG	phrog_3099	NA	unknown function
UHGV-2069537_17	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-2069537_17	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-2069537_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2069537_18	PHROG	phrog_3266	tail completion	connector
UHGV-2069537_18	UniRef90	UniRef90_A0A353IZQ8	Chloramphenicol resistance protein	NA
UHGV-2069537_18	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-2069537_18	Structural annotation	PF12691	NA	NA
UHGV-2069537_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2069537_19	UniRef90	UniRef90_UPI000F63A4E5	minor capsid protein	NA
UHGV-2069537_19	eggNOG-mapper	903814.ELI_3205	Minor capsid protein	NA
UHGV-2069537_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2069537_19	Structural annotation	PF11114	NA	NA
UHGV-2069537_20	PHROG	phrog_3366	NA	unknown function
UHGV-2069537_20	Pfam	PF20536	NA	DUF6751
UHGV-2069537_20	Structural annotation	PF20536, COG1853	NA	NA
UHGV-2069537_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2069537_21	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-2069537_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-2069537_23	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-2069537_23	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-2069537_23	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2069537_25	PHROG	phrog_15041	NA	unknown function
UHGV-2069537_25	eggNOG-mapper	478749.BRYFOR_07608	NA	NA
UHGV-2069537_26	Structural annotation	PF11344	NA	NA
UHGV-2069537_28	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-2069537_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2069537_28	UniRef90	UniRef90_R5AIZ3	Minor capsid 2 protein	NA
UHGV-2069537_28	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-2069537_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2069537_28	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2069537_28	COG	COG2369	NA	NA
UHGV-2069537_28	Structural annotation	PF06152	NA	NA
UHGV-2069537_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-2069537_29	UniRef90	UniRef90_R5ADJ4	Phage minor capsid protein	NA
UHGV-2069537_29	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-2069537_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2069537_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2069537_30	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2069537_30	UniRef90	UniRef90_UPI0009471AF7	HNH endonuclease	NA
UHGV-2069537_30	eggNOG-mapper	1141106.CAIB01000133_gene1117	HNH endonuclease	NA
UHGV-2069537_30	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2069537_30	Structural annotation	PF13392, PF10013, COG4068	NA	NA
UHGV-2069537_33	PHROG	phrog_13890	NA	unknown function
UHGV-2069537_33	eggNOG-mapper	537007.BLAHAN_04929	NA	NA
UHGV-2069537_33	Structural annotation	PF10723, NF010256, COG4877	NA	NA
UHGV-2069537_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2069537_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2069537_34	UniRef90	UniRef90_A0A396NWZ4	PBSX family phage terminase large subunit	NA
UHGV-2069537_34	eggNOG-mapper	536233.CLO_0881	Phage terminase, large subunit, PBSX family	NA
UHGV-2069537_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2069537_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2069537_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2069537_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-2069537_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2069537_35	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2069537_35	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2069537_35	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-2069537_35	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-2069537_35	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2069537_35	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2069537_35	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2069537_36	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2069537_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2069537_37	UniRef90	UniRef90_A0A415FLQ4	NA	NA
UHGV-2069537_37	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-2069537_37	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2069537_37	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2069537_38	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-2069537_38	Structural annotation	PF11998, COG5420	NA	NA
UHGV-2069537_40	Structural annotation	PF11132	NA	NA
UHGV-2069537_41	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2069537_41	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-2069537_41	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2069537_41	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-2069537_44	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-2069537_44	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2069537_44	UniRef90	UniRef90_A0A353J4N2	SF4 helicase domain-containing protein	NA
UHGV-2069537_44	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-2069537_44	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-2069537_44	Pfam	PF13481	AAA domain	AAA_25
UHGV-2069537_44	COG	COG0305	Replicative DNA helicase	NA
UHGV-2069537_44	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-2069537_45	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2069537_45	UniRef90	UniRef90_A0A1M5ZHR8	TF_AP-2 domain-containing protein	NA
UHGV-2069537_45	eggNOG-mapper	1121912.AUHD01000018_gene3472	DnaD domain protein	NA
UHGV-2069537_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2069537_45	Structural annotation	PF07106, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-2069537_46	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2069537_46	UniRef90	UniRef90_A0A6N2R581	ERCC4 domain-containing protein	NA
UHGV-2069537_46	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-2069537_46	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2069537_46	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-2069537_46	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-2069537_47	PHROG	phrog_18107	NA	unknown function
UHGV-2069537_47	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-2069537_47	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-2069537_47	Structural annotation	PF05037	NA	NA
UHGV-2069537_48	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2069537_48	UniRef90	UniRef90_A0A412AWF4	ATP-binding protein	NA
UHGV-2069537_48	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-2069537_48	Pfam	PF13479	AAA domain	AAA_24
UHGV-2069537_48	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2069537_53	UniRef90	UniRef90_A0A416KCJ3	DNA-binding protein	NA
UHGV-2069537_53	eggNOG-mapper	246199.CUS_5199	Helix-turn-helix domain	NA
UHGV-2069537_53	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2069537_53	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2069537_54	PHROG	phrog_5079	NA	unknown function
UHGV-2069537_54	eggNOG-mapper	1204534.J9QDX8_9CAUD	NA	NA
UHGV-2069537_55	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-2069537_56	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2069537_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2069537_56	UniRef90	UniRef90_UPI001EED9016	helix-turn-helix transcriptional regulator	NA
UHGV-2069537_56	eggNOG-mapper	1168034.FH5T_02945	DNA-binding helix-turn-helix protein	NA
UHGV-2069537_56	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2069537_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2069537_56	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2069537_56	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2069537_57	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2069537_57	UniRef90	UniRef90_UPI0019D07354	helix-turn-helix transcriptional regulator	NA
UHGV-2069537_57	eggNOG-mapper	398512.JQKC01000033_gene5012	Helix-turn-helix	NA
UHGV-2069537_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2069537_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2069537_58	PHROG	phrog_87	metallo-protease	other
UHGV-2069537_58	UniRef90	UniRef90_UPI00189DC221	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2069537_58	eggNOG-mapper	457421.CBFG_03224	NA	NA
UHGV-2069537_58	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2069537_58	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2069537_58	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2069537_59	PHROG	phrog_7115	NA	unknown function
UHGV-2069537_59	UniRef90	UniRef90_A0A173UN76	PH domain-containing protein	NA
UHGV-2069537_59	eggNOG-mapper	476272.RUMHYD_02184	Bacterial PH domain	NA
UHGV-2069537_59	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-2069537_59	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-2069537_60	KOfam	K01174	nuc; micrococcal nuclease [EC:3.1.31.1]	NA
UHGV-2069537_60	PHROG	phrog_20876	nuclease	DNA, RNA and nucleotide metabolism
UHGV-2069537_60	UniRef90	UniRef90_A0A3C2EMI7	TNase-like domain-containing protein	NA
UHGV-2069537_60	eggNOG-mapper	1089548.KI783301_gene2029	Staphylococcal nuclease homologues	NA
UHGV-2069537_60	PADLOC	shah_acc_0212	SNc+LTD	CRISPR-CAS
UHGV-2069537_60	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-2069537_60	Pfam	PF00565	Staphylococcal nuclease homologue	SNase
UHGV-2069537_60	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-2069537_61	KOfam	K14059	int; integrase	NA
UHGV-2069537_61	PHROG	phrog_1	integrase	integration and excision
UHGV-2069537_61	UniRef90	UniRef90_A0A352UQ74	Site-specific integrase	NA
UHGV-2069537_61	eggNOG-mapper	1120998.AUFC01000030_gene2201	Belongs to the 'phage' integrase family	NA
UHGV-2069537_61	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2069537_61	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2069537_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2069537_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2069537_61	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA