UHGV-2070337

Genome information

Genome length 42,579 bps

CDS count 61

Completeness 99.97% (high-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-2070337
vOTU ID	vOTU-010384
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029425\|Ga0243935_100217\|provirus_29645_72223
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.02
Jumbo phage	No

Genome content
Genome length	42,579 bps
GC content	43.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	92.28%
Average CDS length	649.38 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2070337_1	PHROG	phrog_28785	NA	unknown function
UHGV-2070337_1	UniRef90	UniRef90_A0A1C5UMB1	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-2070337_1	eggNOG-mapper	1121115.AXVN01000073_gene2025	NA	NA
UHGV-2070337_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2070337_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2070337_2	PHROG	phrog_95	integrase	integration and excision
UHGV-2070337_2	UniRef90	UniRef90_A0A415FHQ5	Recombinase family protein	NA
UHGV-2070337_2	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-2070337_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2070337_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-2070337_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2070337_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2070337_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2070337_3	UniRef90	UniRef90_A0A1C5VJB5	PINc domain-containing protein	NA
UHGV-2070337_3	eggNOG-mapper	97139.C824_01569	Toxic component of a toxin-antitoxin (TA) module. An RNase	NA
UHGV-2070337_3	Pfam	PF01850	PIN domain	PIN
UHGV-2070337_3	COG	COG1848	VapC family ribonuclease, toxin component of the VapBC toxin-antitoxin module, contains PIN domain	NA
UHGV-2070337_3	Structural annotation	PF01850, MF_00265, NF010285, COG1848	NA	NA
UHGV-2070337_4	PHROG	phrog_9989	NA	unknown function
UHGV-2070337_4	UniRef90	UniRef90_A0A1C5VIC1	NA	NA
UHGV-2070337_4	eggNOG-mapper	1227266.HMPREF1551_00183	NA	NA
UHGV-2070337_4	Pfam	PF14213	NA	DUF4325
UHGV-2070337_4	Structural annotation	PF14213	NA	NA
UHGV-2070337_5	PHROG	phrog_3364	NA	unknown function
UHGV-2070337_5	UniRef90	UniRef90_R5RK33	ATP-binding region ATPase-like protein	NA
UHGV-2070337_5	eggNOG-mapper	97139.C824_01571	Histidine kinase	NA
UHGV-2070337_5	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-2070337_5	Structural annotation	PF02518, PF01740, MF_00637, TIGR01925, TIGR00377, COG2172, COG1366	NA	NA
UHGV-2070337_6	PHROG	phrog_87	metallo-protease	other
UHGV-2070337_6	UniRef90	UniRef90_UPI001D07A9BA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2070337_6	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-2070337_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2070337_6	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2070337_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2070337_7	PHROG	phrog_37898	NA	unknown function
UHGV-2070337_7	UniRef90	UniRef90_A0A416QWX7	NA	NA
UHGV-2070337_7	eggNOG-mapper	877414.ATWA01000082_gene1189	NA	NA
UHGV-2070337_7	Pfam	PF10387	NA	DUF2442
UHGV-2070337_7	Structural annotation	PF10387	NA	NA
UHGV-2070337_8	PHROG	phrog_14333	NA	unknown function
UHGV-2070337_8	UniRef90	UniRef90_UPI001C0F7873	NA	NA
UHGV-2070337_8	eggNOG-mapper	1124982.MSI_07850	NA	NA
UHGV-2070337_8	Pfam	PF13711	NA	DUF4160
UHGV-2070337_8	Structural annotation	PF13711	NA	NA
UHGV-2070337_9	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2070337_9	UniRef90	UniRef90_A0A1C5VJY7	Helix-turn-helix domain	NA
UHGV-2070337_9	eggNOG-mapper	1121115.AXVN01000006_gene2173	sequence-specific DNA binding	NA
UHGV-2070337_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2070337_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2070337_9	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2070337_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2070337_10	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-2070337_10	UniRef90	UniRef90_A0A1C5VJP1	Anaerobic benzoate catabolism transcriptional regulator	NA
UHGV-2070337_10	eggNOG-mapper	1120978.KB894087_gene408	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2070337_10	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2070337_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2070337_10	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2070337_13	Structural annotation	PF07875	NA	NA
UHGV-2070337_16	PHROG	phrog_28292	NA	unknown function
UHGV-2070337_16	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-2070337_16	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-2070337_19	Structural annotation	PF16826	NA	NA
UHGV-2070337_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2070337_20	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-2070337_20	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-2070337_20	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2070337_21	UniRef90	UniRef90_A0A1C5PHR0	Ribonuclease H	NA
UHGV-2070337_21	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-2070337_21	COG	COG0328	Ribonuclease HI	NA
UHGV-2070337_21	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2070337_23	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2070337_23	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2070337_23	UniRef90	UniRef90_A0A1C5VK85	Sporulation initiation inhibitor protein soj	NA
UHGV-2070337_23	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-2070337_23	Pfam	PF13614	AAA domain	AAA_31
UHGV-2070337_23	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2070337_23	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2070337_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2070337_24	PHROG	phrog_15077	NA	unknown function
UHGV-2070337_24	UniRef90	UniRef90_A0A1C5VK28	ParB-like nuclease domain	NA
UHGV-2070337_24	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-2070337_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2070337_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2070337_24	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2070337_25	PHROG	phrog_17690	NA	unknown function
UHGV-2070337_25	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-2070337_26	PHROG	phrog_7566	NA	unknown function
UHGV-2070337_26	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-2070337_32	PHROG	phrog_6568	NA	unknown function
UHGV-2070337_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2070337_33	UniRef90	UniRef90_A0A1C5VKJ4	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-2070337_33	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-2070337_33	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2070337_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2070337_33	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2070337_34	Structural annotation	PF07705, MF_00791, NF003967, COG2967	NA	NA
UHGV-2070337_35	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-2070337_35	UniRef90	UniRef90_A0A564VY60	ATPase subunit of terminase (GpP-like)	NA
UHGV-2070337_35	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-2070337_35	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2070337_35	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2070337_35	COG	COG5484	NA	NA
UHGV-2070337_35	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-2070337_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2070337_36	PHROG	phrog_10250	NA	unknown function
UHGV-2070337_36	UniRef90	UniRef90_A0A1G5F2L0	Phage terminase, large subunit, PBSX family	NA
UHGV-2070337_36	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-2070337_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2070337_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2070337_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-2070337_36	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2070337_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-2070337_37	UniRef90	UniRef90_A0A1G5F2B6	Phage portal protein, SPP1 family	NA
UHGV-2070337_37	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-2070337_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2070337_37	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2070337_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2070337_38	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2070337_38	UniRef90	UniRef90_A0A1C5VLG6	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-2070337_38	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2070337_38	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2070337_38	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2070337_38	COG	COG2369	NA	NA
UHGV-2070337_38	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-2070337_40	UniRef90	UniRef90_A0A845R8K0	CopG family transcriptional regulator	NA
UHGV-2070337_40	eggNOG-mapper	1280680.AUJU01000001_gene1860	NA	NA
UHGV-2070337_40	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-2070337_41	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-2070337_41	UniRef90	UniRef90_A0A1C5VLT1	ORF6N domain	NA
UHGV-2070337_41	eggNOG-mapper	476272.RUMHYD_02879	ORF6N domain	NA
UHGV-2070337_41	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2070337_41	Structural annotation	PF10543, PF13058, TIGR02681, COG3646, COG2856	NA	NA
UHGV-2070337_42	Structural annotation	PF01281	NA	NA
UHGV-2070337_43	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2070337_43	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-2070337_43	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-2070337_43	Pfam	PF14265	NA	DUF4355
UHGV-2070337_43	Structural annotation	PF14265	NA	NA
UHGV-2070337_44	PHROG	phrog_422	major head protein	head and packaging
UHGV-2070337_44	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-2070337_44	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-2070337_44	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2070337_45	PHROG	phrog_2724	NA	unknown function
UHGV-2070337_45	UniRef90	UniRef90_A0A1C5VLL2	Rho termination factor, N-terminal domain	NA
UHGV-2070337_45	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-2070337_45	COG	COG0261	Ribosomal protein L21	NA
UHGV-2070337_45	Structural annotation	PF07498	NA	NA
UHGV-2070337_46	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2070337_46	UniRef90	UniRef90_A0A1G5F1K3	Phage gp6-like head-tail connector protein	NA
UHGV-2070337_46	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-2070337_46	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2070337_46	Structural annotation	PF05135	NA	NA
UHGV-2070337_47	PHROG	phrog_2168	NA	unknown function
UHGV-2070337_47	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-2070337_47	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2070337_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2070337_48	UniRef90	UniRef90_A0A1G5F1L8	Phage protein, HK97 gp10 family	NA
UHGV-2070337_48	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2070337_48	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2070337_49	eggNOG-mapper	1235800.C819_00480	NA	NA
UHGV-2070337_49	Structural annotation	PF05657	NA	NA
UHGV-2070337_50	PHROG	phrog_158	major tail protein	tail
UHGV-2070337_50	UniRef90	UniRef90_A0A415FLM9	Phage tail protein	NA
UHGV-2070337_50	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-2070337_50	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2070337_51	UniRef90	UniRef90_UPI001EE8B5C4	NA	NA
UHGV-2070337_51	eggNOG-mapper	1235800.C819_00478	NA	NA
UHGV-2070337_51	Pfam	PF19591	NA	DUF6096
UHGV-2070337_51	Structural annotation	PF19591	NA	NA
UHGV-2070337_52	PHROG	phrog_2066	NA	unknown function
UHGV-2070337_52	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-2070337_53	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2070337_53	UniRef90	UniRef90_A0A448W7L1	Phage-related protein	NA
UHGV-2070337_53	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-2070337_53	COG	COG5412	Phage-related protein	NA
UHGV-2070337_54	PHROG	phrog_1194	NA	unknown function
UHGV-2070337_54	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-2070337_54	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-2070337_54	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2070337_55	PHROG	phrog_1401	NA	unknown function
UHGV-2070337_55	UniRef90	UniRef90_UPI001E3A7391	NA	NA
UHGV-2070337_55	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-2070337_55	Structural annotation	PF07761	NA	NA
UHGV-2070337_56	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2070337_56	PHROG	phrog_6616	tail protein	tail
UHGV-2070337_56	UniRef90	UniRef90_A0A1G5F0W6	Collagen triple helix repeat-containing protein	NA
UHGV-2070337_56	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-2070337_56	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2070337_56	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-2070337_56	COG	COG4926	Phage-related protein	NA
UHGV-2070337_57	Structural annotation	PF07041	NA	NA
UHGV-2070337_58	PHROG	phrog_4105	NA	unknown function
UHGV-2070337_58	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-2070337_59	PHROG	phrog_18218	NA	unknown function
UHGV-2070337_59	UniRef90	UniRef90_A0A352BLY3	Ribonuclease	NA
UHGV-2070337_59	eggNOG-mapper	411459.RUMOBE_00910	NA	NA
UHGV-2070337_59	Structural annotation	PF06946	NA	NA
UHGV-2070337_60	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2070337_60	PHROG	phrog_670	endolysin	lysis
UHGV-2070337_60	UniRef90	UniRef90_A0A416QWS5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2070337_60	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2070337_60	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-2070337_60	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2070337_60	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2070337_60	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2070337_60	Structural annotation	PF01832, NF008758, NF009354, COG5632, COG4193	NA	NA
UHGV-2070337_61	PHROG	phrog_23452	NA	unknown function
UHGV-2070337_61	UniRef90	UniRef90_A0A564W002	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-2070337_61	eggNOG-mapper	1121115.AXVN01000073_gene2025	NA	NA
UHGV-2070337_61	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2070337_61	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA