UHGV-2071155

Genome information

Genome length 39,992 bps

CDS count 69

Completeness 93.56% (high-quality)

geNomad score 0.9687

Prediction confidence Confident

Genome information
Genome ID	UHGV-2071155
vOTU ID	vOTU-010593
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029392\|Ga0243989_1000385\|provirus_20128_60119
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.56% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9687
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.81
Jumbo phage	No

Genome content
Genome length	39,992 bps
GC content	56.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	90.23%
Average CDS length	525.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2071155_1	KOfam	K03602	xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]	NA
UHGV-2071155_1	UniRef90	UniRef90_A0A5K1IX02	Exodeoxyribonuclease 7 small subunit	NA
UHGV-2071155_1	eggNOG-mapper	742722.HMPREF9463_01291	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides	NA
UHGV-2071155_1	Pfam	PF02609	Exonuclease VII small subunit	Exonuc_VII_S
UHGV-2071155_1	NCBIFam	TIGR01280.1	exodeoxyribonuclease VII small subunit	NA
UHGV-2071155_1	COG	COG1722	Exonuclease VII small subunit	NA
UHGV-2071155_1	HAMAP	MF_00337	Exodeoxyribonuclease 7 small subunit [xseB]	NA
UHGV-2071155_2	KOfam	K14059	int; integrase	NA
UHGV-2071155_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2071155_2	UniRef90	UniRef90_A0A3D1WU34	Tyr recombinase domain-containing protein	NA
UHGV-2071155_2	eggNOG-mapper	1125712.HMPREF1316_1553	DNA integration	NA
UHGV-2071155_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2071155_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2071155_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2071155_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2071155_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2071155_4	UniRef90	UniRef90_A0A5K1JFK9	Antitoxin PezA	NA
UHGV-2071155_4	eggNOG-mapper	553184.ATORI0001_1208	Peptidase S24-like	NA
UHGV-2071155_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2071155_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2071155_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2071155_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2071155_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2071155_5	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2071155_5	UniRef90	UniRef90_A0A5K1JFJ2	Helix-turn-helix domain protein	NA
UHGV-2071155_5	eggNOG-mapper	445975.COLSTE_01136	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2071155_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2071155_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2071155_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2071155_6	UniRef90	UniRef90_A0A3D1WRS4	HTH_17 domain-containing protein	NA
UHGV-2071155_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2071155_6	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-2071155_13	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2071155_13	UniRef90	UniRef90_A0A1M4V1T4	AAA domain-containing protein	NA
UHGV-2071155_13	eggNOG-mapper	742742.HMPREF9452_00434	NA	NA
UHGV-2071155_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-2071155_13	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2071155_16	eggNOG-mapper	742742.HMPREF9452_00433	NA	NA
UHGV-2071155_16	Structural annotation	PF05037	NA	NA
UHGV-2071155_17	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2071155_17	UniRef90	UniRef90_UPI001C8D2571	ERCC4 domain-containing protein	NA
UHGV-2071155_17	eggNOG-mapper	742742.HMPREF9452_00432	NA	NA
UHGV-2071155_17	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-2071155_18	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2071155_18	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2071155_18	UniRef90	UniRef90_A0A3D1WTW9	SF3 helicase domain-containing protein	NA
UHGV-2071155_18	eggNOG-mapper	552396.HMPREF0863_00325	D5 N terminal like	NA
UHGV-2071155_18	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-2071155_18	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-2071155_18	Pfam	PF19263	NA	DUF5906
UHGV-2071155_18	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2071155_18	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2071155_18	Structural annotation	PF05272, PF09250, PF08708, MF_00016, NF011296, COG5545	NA	NA
UHGV-2071155_21	Structural annotation	PF17399	NA	NA
UHGV-2071155_26	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2071155_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2071155_26	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2071155_26	Structural annotation	PF14354, NF007260	NA	NA
UHGV-2071155_34	PHROG	phrog_2316	NA	unknown function
UHGV-2071155_34	UniRef90	UniRef90_A0A8A5V4K5	NA	NA
UHGV-2071155_34	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-2071155_34	Pfam	PF16475	NA	DUF5052
UHGV-2071155_34	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-2071155_35	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2071155_35	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2071155_35	UniRef90	UniRef90_A0A5K1JD62	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-2071155_35	eggNOG-mapper	999419.HMPREF1077_01720	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-2071155_35	Pfam	PF00692	dUTPase	dUTPase
UHGV-2071155_35	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-2071155_35	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2071155_35	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-2071155_38	Structural annotation	PF10668, TIGR01321	NA	NA
UHGV-2071155_39	Structural annotation	PF12857	NA	NA
UHGV-2071155_40	UniRef90	UniRef90_A0A412HTW9	NA	NA
UHGV-2071155_41	Structural annotation	PF20987	NA	NA
UHGV-2071155_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2071155_42	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2071155_50	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2071155_50	UniRef90	UniRef90_A0A5K1JDU9	Phage terminase, small subunit	NA
UHGV-2071155_50	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2071155_50	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2071155_51	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2071155_51	UniRef90	UniRef90_A0A5K1IZ70	Phage Terminase	NA
UHGV-2071155_51	eggNOG-mapper	1504822.CCNO01000015_gene618	Terminase	NA
UHGV-2071155_51	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2071155_51	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2071155_51	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2071155_51	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2071155_52	PHROG	phrog_12	portal protein	head and packaging
UHGV-2071155_52	UniRef90	UniRef90_UPI0012DD2CF8	phage portal protein	NA
UHGV-2071155_52	eggNOG-mapper	1504822.CCNO01000015_gene619	Portal protein	NA
UHGV-2071155_52	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2071155_52	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2071155_52	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2071155_52	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2071155_53	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2071155_53	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2071155_53	UniRef90	UniRef90_A0A5K1JFC3	ATP-dependent Clp protease proteolytic subunit 1	NA
UHGV-2071155_53	eggNOG-mapper	1504822.CCNO01000015_gene620	serine-type endopeptidase activity	NA
UHGV-2071155_53	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2071155_53	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2071155_53	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-2071155_54	PHROG	phrog_10	major head protein	head and packaging
UHGV-2071155_54	UniRef90	UniRef90_A0A5K1JE47	Phage capsid family protein	NA
UHGV-2071155_54	eggNOG-mapper	1504822.CCNO01000015_gene621	Phage capsid family	NA
UHGV-2071155_54	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2071155_54	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2071155_54	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2071155_55	PHROG	phrog_442	head-tail adaptor	connector
UHGV-2071155_55	Structural annotation	TIGR02215	NA	NA
UHGV-2071155_56	Structural annotation	PF06141	NA	NA
UHGV-2071155_57	PHROG	phrog_290	minor tail protein	tail
UHGV-2071155_57	UniRef90	UniRef90_UPI0012DF3876	phage tail tube protein	NA
UHGV-2071155_57	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-2071155_57	Structural annotation	PF18906, TIGR01603, COG3498	NA	NA
UHGV-2071155_59	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2071155_60	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-2071155_60	UniRef90	UniRef90_A0A5K1JCK1	Chromosome partition protein Smc	NA
UHGV-2071155_60	eggNOG-mapper	1504822.CCNO01000015_gene632	NA	NA
UHGV-2071155_60	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2071155_60	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2071155_60	COG	COG5283	Phage-related tail protein	NA
UHGV-2071155_60	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2071155_61	UniRef90	UniRef90_A0A5K1JBQ1	Fibronectin type-III domain-containing protein	NA
UHGV-2071155_61	eggNOG-mapper	1504822.CCNO01000015_gene633	cellulase activity	NA
UHGV-2071155_61	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2071155_61	Structural annotation	PF00041, PF02010, PF05939, MF_04116, NF010681, COG3401, COG2372, COG5437	NA	NA
UHGV-2071155_62	PHROG	phrog_1887	tail protein	tail
UHGV-2071155_62	eggNOG-mapper	1504822.CCNO01000015_gene634	NA	NA
UHGV-2071155_62	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2071155_63	Structural annotation	PF16450, MF_00075, TIGR00008, COG0361	NA	NA