UHGV-2071307

Genome information

Genome length 57,758 bps

CDS count 87

Completeness 95.54% (high-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-2071307
vOTU ID	vOTU-010387
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029403\|Ga0243191_100084\|provirus_1_57758
BioSample	SAMEA2581906
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.54% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.34
Jumbo phage	No

Genome content
Genome length	57,758 bps
GC content	36.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	87
CDS density	91.32%
Average CDS length	608.24 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2071307_5	UniRef90	UniRef90_UPI000D6C64C4	NA	NA
UHGV-2071307_5	eggNOG-mapper	397291.C804_03878	NA	NA
UHGV-2071307_5	Pfam	PF18941	NA	DUF5688
UHGV-2071307_5	Structural annotation	PF18941, MF_01548, NF010189, COG4848	NA	NA
UHGV-2071307_10	PHROG	phrog_17256	NA	unknown function
UHGV-2071307_10	eggNOG-mapper	665950.HMPREF1025_01937	NA	NA
UHGV-2071307_20	KOfam	K00942	gmk, GUK1; guanylate kinase [EC:2.7.4.8]	NA
UHGV-2071307_20	PHROG	phrog_1815	guanylate kinase	other
UHGV-2071307_20	UniRef90	UniRef90_UPI001924690E	guanylate kinase	NA
UHGV-2071307_20	eggNOG-mapper	411470.RUMGNA_00013	Guanylate kinase homologues.	NA
UHGV-2071307_20	Pfam	PF00625	Guanylate kinase	Guanylate_kin
UHGV-2071307_20	COG	COG0194	Guanylate kinase	NA
UHGV-2071307_20	Structural annotation	PF00625, MF_00328, NF011325, COG0194	NA	NA
UHGV-2071307_25	PHROG	phrog_6721	NA	unknown function
UHGV-2071307_25	eggNOG-mapper	742740.HMPREF9474_02288	NA	NA
UHGV-2071307_27	Pfam	PF02150	RNA polymerases M/15 Kd subunit	RNA_POL_M_15KD
UHGV-2071307_27	Structural annotation	PF04606, NF007241, COG3478	NA	NA
UHGV-2071307_28	PHROG	phrog_6721	NA	unknown function
UHGV-2071307_28	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-2071307_33	PHROG	phrog_2316	NA	unknown function
UHGV-2071307_33	UniRef90	UniRef90_A0A417FQ72	NA	NA
UHGV-2071307_33	eggNOG-mapper	1504823.CCMM01000012_gene2233	NA	NA
UHGV-2071307_33	Pfam	PF16475	NA	DUF5052
UHGV-2071307_33	Structural annotation	PF16475	NA	NA
UHGV-2071307_34	PHROG	phrog_38560	NA	unknown function
UHGV-2071307_34	eggNOG-mapper	610130.Closa_0723	NA	NA
UHGV-2071307_35	PHROG	phrog_2259	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2071307_35	UniRef90	UniRef90_UPI0004627515	3'-5' exoribonuclease	NA
UHGV-2071307_35	eggNOG-mapper	1356854.N007_05280	3' exoribonuclease, RNase T-like	NA
UHGV-2071307_35	Pfam	PF16473	3'-5' exoribonuclease Rv2179c-like domain	Rv2179c-like
UHGV-2071307_35	Structural annotation	PF21762, MF_00977, NF033638, COG0847	NA	NA
UHGV-2071307_36	PHROG	phrog_19852	NA	unknown function
UHGV-2071307_36	eggNOG-mapper	742740.HMPREF9474_02297	NA	NA
UHGV-2071307_39	PHROG	phrog_24386	NA	unknown function
UHGV-2071307_39	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-2071307_39	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-2071307_40	PHROG	phrog_24386	NA	unknown function
UHGV-2071307_40	eggNOG-mapper	411460.RUMTOR_01374	COG NOG28949 non supervised orthologous group	NA
UHGV-2071307_40	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-2071307_44	PHROG	phrog_2152	NA	unknown function
UHGV-2071307_44	UniRef90	UniRef90_A0A6N3H3Z7	NA	NA
UHGV-2071307_44	eggNOG-mapper	742733.HMPREF9469_05079	NA	NA
UHGV-2071307_44	Pfam	PF19880	NA	DUF6353
UHGV-2071307_44	Structural annotation	PF19880	NA	NA
UHGV-2071307_46	PHROG	phrog_4079	NA	unknown function
UHGV-2071307_46	eggNOG-mapper	742740.HMPREF9474_02312	NA	NA
UHGV-2071307_47	PHROG	phrog_1048	NA	unknown function
UHGV-2071307_47	UniRef90	UniRef90_UPI00189A7662	NA	NA
UHGV-2071307_47	eggNOG-mapper	1118063.I7ILS0_9CAUD	NA	NA
UHGV-2071307_47	Pfam	PF11195	NA	DUF2829
UHGV-2071307_47	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2071307_47	Structural annotation	PF11195	NA	NA
UHGV-2071307_48	PHROG	phrog_2152	NA	unknown function
UHGV-2071307_48	UniRef90	UniRef90_UPI00156DA7B3	NA	NA
UHGV-2071307_48	eggNOG-mapper	742740.HMPREF9474_02310	NA	NA
UHGV-2071307_48	Pfam	PF19880	NA	DUF6353
UHGV-2071307_48	Structural annotation	PF19880	NA	NA
UHGV-2071307_49	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2071307_50	PHROG	phrog_4695	NA	unknown function
UHGV-2071307_51	PHROG	phrog_4678	NA	unknown function
UHGV-2071307_51	eggNOG-mapper	742733.HMPREF9469_05069	NA	NA
UHGV-2071307_53	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2071307_53	UniRef90	UniRef90_A0A372V5Y1	SF3 helicase domain-containing protein	NA
UHGV-2071307_53	eggNOG-mapper	742733.HMPREF9469_05066	NA	NA
UHGV-2071307_53	Pfam	PF19263	NA	DUF5906
UHGV-2071307_53	Structural annotation	PF00136, PF05272, PF09250, MF_04100, MF_00016, NF005477, NF004420, COG3378, COG0417	NA	NA
UHGV-2071307_54	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2071307_54	UniRef90	UniRef90_A0A7X7CP10	Bro-N domain-containing protein	NA
UHGV-2071307_54	eggNOG-mapper	411460.RUMTOR_01384	NA	NA
UHGV-2071307_54	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-2071307_56	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2071307_56	UniRef90	UniRef90_A0A4Q5C8W0	Helicase ATP-binding domain-containing protein	NA
UHGV-2071307_56	eggNOG-mapper	742733.HMPREF9469_05062	Helicase conserved C-terminal domain	NA
UHGV-2071307_56	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2071307_56	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-2071307_57	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-2071307_57	Structural annotation	PF01870, COG1591	NA	NA
UHGV-2071307_58	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2071307_58	UniRef90	UniRef90_A0A374ABF7	NA	NA
UHGV-2071307_58	eggNOG-mapper	742740.HMPREF9474_02279	NA	NA
UHGV-2071307_58	Pfam	PF10926	NA	DUF2800
UHGV-2071307_58	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2071307_59	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2071307_59	UniRef90	UniRef90_A0A1C5MZZ8	Transposase and inactivated derivatives, IS30 family	NA
UHGV-2071307_59	eggNOG-mapper	665950.HMPREF1025_01987	NA	NA
UHGV-2071307_59	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2071307_59	Structural annotation	PF05183	NA	NA
UHGV-2071307_60	PHROG	phrog_4303	NA	unknown function
UHGV-2071307_60	eggNOG-mapper	742733.HMPREF9469_05038	NA	NA
UHGV-2071307_62	PHROG	phrog_4259	NA	unknown function
UHGV-2071307_62	eggNOG-mapper	742740.HMPREF9474_02276	NA	NA
UHGV-2071307_63	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2071307_63	eggNOG-mapper	742733.HMPREF9469_05036	NA	NA
UHGV-2071307_64	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-2071307_64	UniRef90	UniRef90_D4P7N2	Gp014	NA
UHGV-2071307_64	eggNOG-mapper	428125.CLOLEP_01407	NA	NA
UHGV-2071307_66	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2071307_66	UniRef90	UniRef90_UPI001D05F004	terminase large subunit	NA
UHGV-2071307_66	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-2071307_66	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2071307_66	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2071307_66	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2071307_66	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2071307_67	PHROG	phrog_12	portal protein	head and packaging
UHGV-2071307_67	UniRef90	UniRef90_A0A173Z5V2	Phage portal protein, HK97 family	NA
UHGV-2071307_67	eggNOG-mapper	428125.CLOLEP_01411	Phage portal protein	NA
UHGV-2071307_67	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2071307_67	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2071307_68	KOfam	K06904	NA	NA
UHGV-2071307_68	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-2071307_68	UniRef90	UniRef90_A0A372V7I1	Caudovirus prohead protease	NA
UHGV-2071307_68	eggNOG-mapper	428125.CLOLEP_01412	Caudovirus prohead serine protease	NA
UHGV-2071307_68	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2071307_68	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-2071307_69	PHROG	phrog_4270	NA	unknown function
UHGV-2071307_69	eggNOG-mapper	665956.HMPREF1032_00677	NA	NA
UHGV-2071307_69	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2071307_70	PHROG	phrog_78	tail terminator	connector
UHGV-2071307_70	eggNOG-mapper	428125.CLOLEP_01414	NA	NA
UHGV-2071307_70	Structural annotation	PF20765	NA	NA
UHGV-2071307_71	PHROG	phrog_2645	major tail protein	tail
UHGV-2071307_71	eggNOG-mapper	428125.CLOLEP_01415	NA	NA
UHGV-2071307_71	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2071307_72	PHROG	phrog_4282	NA	unknown function
UHGV-2071307_72	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-2071307_73	PHROG	phrog_4338	NA	unknown function
UHGV-2071307_73	eggNOG-mapper	1537917.JU82_06570	NA	NA
UHGV-2071307_74	UniRef90	UniRef90_A0A3A9JBQ1	HK97 gp10 family phage protein	NA
UHGV-2071307_74	eggNOG-mapper	428125.CLOLEP_01421	NA	NA
UHGV-2071307_74	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2071307_74	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-2071307_75	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-2071307_75	eggNOG-mapper	665956.HMPREF1032_00686	phage tail tape measure protein	NA
UHGV-2071307_75	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2071307_75	COG	COG5412	Phage-related protein	NA
UHGV-2071307_76	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2071307_76	UniRef90	UniRef90_A0A3A9IST2	Phage tail family protein	NA
UHGV-2071307_76	eggNOG-mapper	742740.HMPREF9474_02261	Phage tail protein	NA
UHGV-2071307_76	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-2071307_77	PHROG	phrog_538	minor tail protein	tail
UHGV-2071307_77	UniRef90	UniRef90_UPI0011DE0073	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2071307_77	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-2071307_77	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2071307_77	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2071307_78	KOfam	K22708	tarS; poly(ribitol-phosphate) beta-N-acetylglucosaminyltransferase [EC:2.4.1.355]	NA
UHGV-2071307_78	UniRef90	UniRef90_A0A843GMD4	Glycosyltransferase family 2 protein	NA
UHGV-2071307_78	eggNOG-mapper	388919.SSA_1517	Glycosyltransferase like family 2	NA
UHGV-2071307_78	Pfam	PF00535	Glycosyl transferase family 2	Glycos_transf_2
UHGV-2071307_78	COG	COG1216	Glycosyltransferase, GT2 family	NA
UHGV-2071307_78	Structural annotation	PF13641, MF_01164, NF007482, COG1215	NA	NA
UHGV-2071307_80	PHROG	phrog_1220	head protein	head and packaging
UHGV-2071307_80	UniRef90	UniRef90_A0A369WDM5	Phage tail protein	NA
UHGV-2071307_80	eggNOG-mapper	411460.RUMTOR_01332	COG NOG18825 non supervised orthologous group	NA
UHGV-2071307_80	Structural annotation	PF20747	NA	NA
UHGV-2071307_84	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2071307_84	Structural annotation	NF040910	NA	NA
UHGV-2071307_85	PHROG	phrog_4105	NA	unknown function
UHGV-2071307_85	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-2071307_86	eggNOG-mapper	1203606.HMPREF1526_00254	NA	NA
UHGV-2071307_87	eggNOG-mapper	1280681.AUJZ01000045_gene2512	NA	NA