UHGV-2071930

Genome information

Genome length 48,443 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9536

Prediction confidence Confident

Genome information
Genome ID	UHGV-2071930
vOTU ID	vOTU-014449
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029375\|Ga0243934_1000516\|provirus_13428_61870
BioSample	SAMN05971646
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9536
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.5
Jumbo phage	No

Genome content
Genome length	48,443 bps
GC content	52.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.43%
Average CDS length	746.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2071930_1	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-2071930_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2071930_1	UniRef90	UniRef90_A0A416NDC5	Integrase	NA
UHGV-2071930_1	eggNOG-mapper	658088.HMPREF0987_01033	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2071930_1	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2071930_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2071930_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2071930_1	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2071930_2	KOfam	K01154	hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]	NA
UHGV-2071930_2	PHROG	phrog_2668	NA	unknown function
UHGV-2071930_2	UniRef90	UniRef90_A0A415FF21	Restriction endonuclease subunit S	NA
UHGV-2071930_2	eggNOG-mapper	1042156.CXIVA_04330	Type I restriction modification DNA specificity domain	NA
UHGV-2071930_2	PADLOC	Specificity_I_00033	Type I specificity subunit	RM
UHGV-2071930_2	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-2071930_2	COG	COG0732	Restriction endonuclease S subunit	NA
UHGV-2071930_2	Structural annotation	PF01420, NF007278, COG0732	NA	NA
UHGV-2071930_3	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-2071930_3	PHROG	phrog_4747	NA	unknown function
UHGV-2071930_3	UniRef90	UniRef90_A0A8A5CU90	AAA family ATPase	NA
UHGV-2071930_3	eggNOG-mapper	583355.Caka_0144	NA	NA
UHGV-2071930_3	PADLOC	retron_I-C3	single gene	Retron
UHGV-2071930_3	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-2071930_3	COG	COG4637	Predicted ATPase	NA
UHGV-2071930_4	KOfam	K01153	hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]	NA
UHGV-2071930_4	PHROG	phrog_16694	NA	unknown function
UHGV-2071930_4	UniRef90	UniRef90_A0A845N2M3	Type I site-specific deoxyribonuclease	NA
UHGV-2071930_4	eggNOG-mapper	1519439.JPJG01000034_gene1568	Type I site-specific restriction-modification system, R (restriction) subunit and related helicases	NA
UHGV-2071930_4	PADLOC	REase_I_00008	Type I restriction enzyme	RM
UHGV-2071930_4	Pfam	PF13643	NA	DUF4145
UHGV-2071930_4	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-2071930_4	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2071930_4	COG	COG4096	Type I site-specific restriction endonuclease, part of a restriction-modification system	NA
UHGV-2071930_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2071930_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2071930_5	UniRef90	UniRef90_A0A385Q3I4	XRE family transcriptional regulator	NA
UHGV-2071930_5	eggNOG-mapper	1235798.C817_02945	Helix-turn-helix XRE-family like proteins	NA
UHGV-2071930_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2071930_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2071930_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2071930_5	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2071930_6	UniRef90	UniRef90_UPI000AE5279C	helix-turn-helix transcriptional regulator	NA
UHGV-2071930_6	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2071930_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2071930_6	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2071930_12	PHROG	phrog_310	transposase	integration and excision
UHGV-2071930_12	UniRef90	UniRef90_A0A6N8H399	MerR family transcriptional regulator	NA
UHGV-2071930_12	eggNOG-mapper	411471.SUBVAR_07010	Mu transposase, C-terminal	NA
UHGV-2071930_12	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-2071930_12	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-2071930_12	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-2071930_12	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-2071930_13	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-2071930_13	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-2071930_13	UniRef90	UniRef90_A0A6N8H4X2	ATP-binding protein	NA
UHGV-2071930_13	eggNOG-mapper	411471.SUBVAR_07009	AAA domain	NA
UHGV-2071930_13	Pfam	PF13401	AAA domain	AAA_22
UHGV-2071930_13	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-2071930_15	PHROG	phrog_5671	NA	unknown function
UHGV-2071930_15	eggNOG-mapper	293826.Amet_0399	NA	NA
UHGV-2071930_16	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2071930_16	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-2071930_16	eggNOG-mapper	411471.SUBVAR_07006	Bacteriophage Mu Gam like protein	NA
UHGV-2071930_16	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-2071930_16	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-2071930_16	Structural annotation	PF07352, COG4396	NA	NA
UHGV-2071930_18	PHROG	phrog_286	NA	unknown function
UHGV-2071930_18	UniRef90	UniRef90_A0A6N8H086	Regulatory protein GemA	NA
UHGV-2071930_18	eggNOG-mapper	411471.SUBVAR_07005	NA	NA
UHGV-2071930_18	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-2071930_18	Structural annotation	PF06252	NA	NA
UHGV-2071930_19	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-2071930_19	UniRef90	UniRef90_A0A6N8H2N1	DNA-binding protein	NA
UHGV-2071930_19	eggNOG-mapper	411471.SUBVAR_07004	Mor transcription activator	NA
UHGV-2071930_19	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-2071930_19	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-2071930_19	Structural annotation	PF08765, COG5566	NA	NA
UHGV-2071930_20	PHROG	phrog_462	lipoprotein	other
UHGV-2071930_20	eggNOG-mapper	411471.SUBVAR_07003	NA	NA
UHGV-2071930_21	PHROG	phrog_25462	NA	unknown function
UHGV-2071930_21	UniRef90	UniRef90_A0A6N8H1D3	Type VI secretion protein	NA
UHGV-2071930_21	eggNOG-mapper	742733.HMPREF9469_02885	NA	NA
UHGV-2071930_21	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-2071930_22	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-2071930_22	UniRef90	UniRef90_A0A6N8H2N8	NA	NA
UHGV-2071930_22	eggNOG-mapper	411471.SUBVAR_07001	NA	NA
UHGV-2071930_22	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-2071930_22	Structural annotation	PF11985	NA	NA
UHGV-2071930_23	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-2071930_23	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-2071930_23	UniRef90	UniRef90_A0A6N8H0F4	NGN domain-containing protein	NA
UHGV-2071930_23	eggNOG-mapper	411471.SUBVAR_07000	Transcription termination factor nusG	NA
UHGV-2071930_23	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-2071930_23	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-2071930_23	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-2071930_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2071930_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2071930_25	UniRef90	UniRef90_A0A6N8H4Y1	PBSX family phage terminase large subunit	NA
UHGV-2071930_25	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-2071930_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2071930_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2071930_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2071930_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2071930_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2071930_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-2071930_27	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-2071930_27	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-2071930_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2071930_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2071930_28	UniRef90	UniRef90_UPI00196795ED	phage minor capsid protein	NA
UHGV-2071930_28	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-2071930_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2071930_28	COG	COG2369	NA	NA
UHGV-2071930_28	Structural annotation	PF06152, PF07737, TIGR01641, COG2369	NA	NA
UHGV-2071930_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2071930_31	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-2071930_31	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-2071930_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2071930_31	Structural annotation	PF06810	NA	NA
UHGV-2071930_32	PHROG	phrog_422	major head protein	head and packaging
UHGV-2071930_32	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2071930_32	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2071930_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2071930_34	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-2071930_35	Structural annotation	PF20536	NA	NA
UHGV-2071930_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2071930_36	UniRef90	UniRef90_UPI001967B4B3	minor capsid protein	NA
UHGV-2071930_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2071930_36	Structural annotation	PF11114	NA	NA
UHGV-2071930_37	PHROG	phrog_3266	tail completion	connector
UHGV-2071930_37	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-2071930_37	Structural annotation	PF08873	NA	NA
UHGV-2071930_38	PHROG	phrog_3099	NA	unknown function
UHGV-2071930_38	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-2071930_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2071930_39	PHROG	phrog_11299	NA	unknown function
UHGV-2071930_39	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-2071930_39	Structural annotation	PF10666	NA	NA
UHGV-2071930_40	PHROG	phrog_706	NA	unknown function
UHGV-2071930_40	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-2071930_40	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-2071930_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2071930_40	Structural annotation	PF06854	NA	NA
UHGV-2071930_41	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-2071930_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2071930_41	eggNOG-mapper	665956.HMPREF1032_03628	domain protein	NA
UHGV-2071930_41	COG	COG1511	NA	NA
UHGV-2071930_42	PHROG	phrog_1194	NA	unknown function
UHGV-2071930_42	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-2071930_42	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2071930_43	PHROG	phrog_13879	NA	unknown function
UHGV-2071930_43	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-2071930_43	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2071930_44	PHROG	phrog_18725	NA	unknown function
UHGV-2071930_44	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-2071930_45	eggNOG-mapper	1469948.JPNB01000001_gene535	domain, Protein	NA
UHGV-2071930_45	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2071930_46	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-2071930_46	Structural annotation	PF10651	NA	NA
UHGV-2071930_47	PHROG	phrog_17147	NA	unknown function
UHGV-2071930_47	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-2071930_48	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2071930_48	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2071930_48	UniRef90	UniRef90_A0A348T010	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2071930_48	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2071930_48	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2071930_48	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-2071930_50	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-2071930_50	PHROG	phrog_14988	peptidase	other
UHGV-2071930_50	UniRef90	UniRef90_A0A2V2FF85	Peptidase M23	NA
UHGV-2071930_50	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-2071930_50	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2071930_50	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2071930_50	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-2071930_51	PHROG	phrog_13256	NA	unknown function
UHGV-2071930_51	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA
UHGV-2071930_52	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2071930_52	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2071930_52	UniRef90	UniRef90_UPI001C3B62EA	DNA adenine methylase	NA
UHGV-2071930_52	eggNOG-mapper	411471.SUBVAR_06973	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2071930_52	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-2071930_52	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2071930_52	COG	COG0338	DNA-adenine methylase	NA
UHGV-2071930_52	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-2071930_53	PHROG	phrog_1841	Abi alpha-like abortive infection mechanism	moron, auxiliary metabolic gene and host takeover
UHGV-2071930_53	UniRef90	UniRef90_UPI00143C9B86	AIPR family protein	NA
UHGV-2071930_53	eggNOG-mapper	762983.HMPREF9444_00448	AIPR protein	NA
UHGV-2071930_53	PADLOC	MzaE_00001	NA	mzaABCDE
UHGV-2071930_53	Pfam	PF10592	AIPR protein	AIPR
UHGV-2071930_54	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2071930_54	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2071930_54	UniRef90	UniRef90_A0A329U0N9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2071930_54	eggNOG-mapper	1235800.C819_04216	C-5 cytosine-specific DNA methylase	NA
UHGV-2071930_54	PADLOC	MTase_II_00011	Type II methyltransferase	RM
UHGV-2071930_54	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2071930_54	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2071930_54	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2071930_54	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-2071930_55	PHROG	phrog_29177	NA	unknown function
UHGV-2071930_55	UniRef90	UniRef90_A0A3A6CSA8	Toll/interleukin-1 receptor domain-containing protein	NA
UHGV-2071930_55	eggNOG-mapper	561229.Dd1591_0446	TIR domain	NA
UHGV-2071930_55	Pfam	PF13676	TIR domain	TIR_2
UHGV-2071930_56	eggNOG-mapper	718252.FP2_27730	NA	NA
UHGV-2071930_57	eggNOG-mapper	1121115.AXVN01000079_gene2738	NA	NA
UHGV-2071930_58	UniRef90	UniRef90_A0A367GEZ6	Hin recombinase	NA
UHGV-2071930_58	eggNOG-mapper	1121115.AXVN01000079_gene2739	NA	NA
UHGV-2071930_58	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-2071930_59	PHROG	phrog_16255	NA	unknown function
UHGV-2071930_59	UniRef90	UniRef90_A0A349QM34	RloB-like protein (Fragment)	NA
UHGV-2071930_59	eggNOG-mapper	1235798.C817_03871	RloB-like protein	NA
UHGV-2071930_59	PADLOC	AbiLii-1	AbiLii	Abi
UHGV-2071930_59	Pfam	PF13707	RloB-like protein	RloB
UHGV-2071930_59	Structural annotation	PF13707, COG1731	NA	NA