UHGV-2072488

Genome information

Genome length 36,377 bps

CDS count 59

Completeness 99.48% (high-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-2072488
vOTU ID	vOTU-014463
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029415\|Ga0243378_1000396\|provirus_433_36809
BioSample	SAMEA2582098
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.48% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.14
Jumbo phage	No

Genome content
Genome length	36,377 bps
GC content	46.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	94.74%
Average CDS length	591.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2072488_1	KOfam	K14059	int; integrase	NA
UHGV-2072488_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2072488_1	UniRef90	UniRef90_D4L3N3	Site-specific recombinase XerD	NA
UHGV-2072488_1	eggNOG-mapper	1235790.C805_00008	Phage integrase family	NA
UHGV-2072488_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2072488_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2072488_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2072488_2	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-2072488_4	PHROG	phrog_20886	NA	unknown function
UHGV-2072488_4	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2072488_4	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-2072488_4	Structural annotation	PF06114	NA	NA
UHGV-2072488_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2072488_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2072488_5	UniRef90	UniRef90_A0A3R6A4D1	XRE family transcriptional regulator	NA
UHGV-2072488_5	eggNOG-mapper	476272.RUMHYD_02826	TRANSCRIPTIONal	NA
UHGV-2072488_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2072488_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2072488_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2072488_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2072488_6	UniRef90	UniRef90_UPI001C015CA8	helix-turn-helix domain-containing protein	NA
UHGV-2072488_6	eggNOG-mapper	1304866.K413DRAFT_3003	addiction module antidote protein HigA	NA
UHGV-2072488_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2072488_6	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2072488_10	UniRef90	UniRef90_A0A414RMV5	Lectin-1	NA
UHGV-2072488_10	Structural annotation	COG3296	NA	NA
UHGV-2072488_13	PHROG	phrog_674	NA	unknown function
UHGV-2072488_13	UniRef90	UniRef90_UPI001C01FE50	NA	NA
UHGV-2072488_13	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-2072488_13	Pfam	PF07083	NA	DUF1351
UHGV-2072488_13	Structural annotation	PF07083	NA	NA
UHGV-2072488_15	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2072488_15	UniRef90	UniRef90_UPI001C031D02	ERF family protein	NA
UHGV-2072488_15	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-2072488_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-2072488_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2072488_15	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2072488_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2072488_16	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-2072488_16	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-2072488_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2072488_17	PHROG	phrog_7566	NA	unknown function
UHGV-2072488_17	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-2072488_17	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-2072488_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2072488_19	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2072488_19	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2072488_19	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-2072488_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2072488_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2072488_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2072488_20	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2072488_20	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-2072488_20	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-2072488_20	Structural annotation	PF07106, PF07261, MF_01177, TIGR01714, TIGR01446, COG5529	NA	NA
UHGV-2072488_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2072488_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2072488_21	UniRef90	UniRef90_UPI000E81B795	ATP-binding protein	NA
UHGV-2072488_21	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-2072488_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2072488_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2072488_21	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-2072488_24	PHROG	phrog_15198	NA	unknown function
UHGV-2072488_24	UniRef90	UniRef90_UPI00156ED5AF	NA	NA
UHGV-2072488_24	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-2072488_24	Pfam	PF04448	NA	DUF551
UHGV-2072488_24	Structural annotation	NF041588	NA	NA
UHGV-2072488_26	eggNOG-mapper	397288.C806_00098	NA	NA
UHGV-2072488_28	PHROG	phrog_98	NA	unknown function
UHGV-2072488_28	UniRef90	UniRef90_UPI00164AC5B9	YopX family protein	NA
UHGV-2072488_28	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-2072488_28	Pfam	PF09643	YopX protein	YopX
UHGV-2072488_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2072488_31	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2072488_31	UniRef90	UniRef90_A0A1M6S2C1	Restriction alleviation protein Lar	NA
UHGV-2072488_31	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2072488_31	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-2072488_31	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2072488_31	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2072488_32	PHROG	phrog_20593	NA	unknown function
UHGV-2072488_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2072488_35	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2072488_35	UniRef90	UniRef90_A0A1Q9J771	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2072488_35	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-2072488_35	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2072488_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2072488_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2072488_35	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2072488_36	eggNOG-mapper	1304866.K413DRAFT_4636	NA	NA
UHGV-2072488_36	Structural annotation	PF17457	NA	NA
UHGV-2072488_37	UniRef90	UniRef90_UPI001C02B1D3	NA	NA
UHGV-2072488_37	Pfam	PF20037	NA	DUF6440
UHGV-2072488_37	Structural annotation	PF20037	NA	NA
UHGV-2072488_39	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2072488_39	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2072488_39	UniRef90	UniRef90_UPI0015702ED4	terminase small subunit	NA
UHGV-2072488_39	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-2072488_39	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2072488_39	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2072488_39	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2072488_39	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-2072488_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2072488_40	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2072488_40	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-2072488_40	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-2072488_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2072488_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-2072488_40	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2072488_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-2072488_41	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-2072488_41	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-2072488_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2072488_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2072488_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2072488_42	UniRef90	UniRef90_UPI00156DAD02	phage minor capsid protein	NA
UHGV-2072488_42	eggNOG-mapper	545697.HMPREF0216_02846	Phage minor capsid protein 2	NA
UHGV-2072488_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2072488_42	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-2072488_42	COG	COG2369	NA	NA
UHGV-2072488_42	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-2072488_44	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2072488_44	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-2072488_44	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2072488_44	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2072488_44	Structural annotation	PF06810	NA	NA
UHGV-2072488_45	PHROG	phrog_422	major head protein	head and packaging
UHGV-2072488_45	eggNOG-mapper	1235794.C811_01371	NA	NA
UHGV-2072488_45	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2072488_47	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2072488_48	PHROG	phrog_3366	NA	unknown function
UHGV-2072488_48	Pfam	PF20536	NA	DUF6751
UHGV-2072488_48	Structural annotation	PF20536	NA	NA
UHGV-2072488_49	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2072488_49	UniRef90	UniRef90_UPI001A9B9821	capsid protein	NA
UHGV-2072488_49	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-2072488_49	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2072488_49	Structural annotation	PF11114	NA	NA
UHGV-2072488_50	PHROG	phrog_3266	tail completion	connector
UHGV-2072488_50	Structural annotation	PF12691	NA	NA
UHGV-2072488_51	PHROG	phrog_3099	NA	unknown function
UHGV-2072488_51	eggNOG-mapper	1539298.JO41_08150	NA	NA
UHGV-2072488_52	Structural annotation	PF16462	NA	NA
UHGV-2072488_53	PHROG	phrog_706	NA	unknown function
UHGV-2072488_53	UniRef90	UniRef90_UPI00156EC658	Gp15 family bacteriophage protein	NA
UHGV-2072488_53	eggNOG-mapper	1125725.HMPREF1325_1338	Bacteriophage Gp15 protein	NA
UHGV-2072488_53	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2072488_53	Structural annotation	PF06854	NA	NA
UHGV-2072488_54	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2072488_54	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-2072488_54	COG	COG1511	NA	NA
UHGV-2072488_54	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2072488_55	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2072488_55	UniRef90	UniRef90_A0A174GX45	Phage-related protein	NA
UHGV-2072488_55	eggNOG-mapper	1235792.C808_05378	NA	NA
UHGV-2072488_55	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-2072488_56	PHROG	phrog_9886	NA	unknown function
UHGV-2072488_56	UniRef90	UniRef90_A0A358PQV6	Prophage_tail domain-containing protein	NA
UHGV-2072488_56	eggNOG-mapper	1235792.C808_03048	Prophage endopeptidase tail	NA
UHGV-2072488_56	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2072488_56	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2072488_56	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2072488_56	COG	COG4926	Phage-related protein	NA
UHGV-2072488_56	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-2072488_57	PHROG	phrog_1419	tail protein	tail
UHGV-2072488_57	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-2072488_57	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2072488_58	PHROG	phrog_1863	NA	unknown function
UHGV-2072488_58	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-2072488_59	PHROG	phrog_443	holin	lysis
UHGV-2072488_59	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-2072488_59	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-2072488_59	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2072488_59	Structural annotation	PF16945	NA	NA