UHGV-2072683

Genome information

Genome length 31,244 bps

CDS count 45

Completeness 88.91% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-2072683
vOTU ID	vOTU-016017
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029412\|Ga0243915_100016\|provirus_3_31246
BioSample	SAMN05971627
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.33
Jumbo phage	No

Genome content
Genome length	31,244 bps
GC content	46.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.49%
Average CDS length	645.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2072683_1	eggNOG-mapper	428125.CLOLEP_00170	NA	NA
UHGV-2072683_2	PHROG	phrog_3393	endolysin	lysis
UHGV-2072683_2	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2072683_2	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2072683_3	KOfam	K07273	acm; lysozyme	NA
UHGV-2072683_3	PHROG	phrog_291	endolysin	lysis
UHGV-2072683_3	UniRef90	UniRef90_A0A316TA26	LysM domain-containing protein	NA
UHGV-2072683_3	eggNOG-mapper	428125.CLOLEP_00561	Glycosyl hydrolases family 25	NA
UHGV-2072683_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2072683_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2072683_3	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-2072683_4	UniRef90	UniRef90_R6NDD3	Glycosyl hydrolase family 25	NA
UHGV-2072683_4	Structural annotation	PF02796, COG2771	NA	NA
UHGV-2072683_5	PHROG	phrog_7121	tail fiber protein	tail
UHGV-2072683_5	UniRef90	UniRef90_A7VT91	Peptidase S74 domain-containing protein	NA
UHGV-2072683_5	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-2072683_5	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2072683_6	PHROG	phrog_19280	NA	unknown function
UHGV-2072683_6	UniRef90	UniRef90_A0A412AXT4	NA	NA
UHGV-2072683_6	eggNOG-mapper	428125.CLOLEP_02045	NA	NA
UHGV-2072683_6	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2072683_7	PHROG	phrog_5555	tail protein	tail
UHGV-2072683_7	UniRef90	UniRef90_R6P8A1	Peptidase S74 domain-containing protein	NA
UHGV-2072683_7	eggNOG-mapper	999413.HMPREF1094_00205	NA	NA
UHGV-2072683_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2072683_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2072683_7	COG	COG4926	Phage-related protein	NA
UHGV-2072683_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2072683_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2072683_8	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-2072683_8	eggNOG-mapper	1280689.AUJC01000007_gene3307	phage tail	NA
UHGV-2072683_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-2072683_8	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-2072683_9	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-2072683_9	UniRef90	UniRef90_R6NCT4	Phage tail tape measure protein TP901 family	NA
UHGV-2072683_9	eggNOG-mapper	663278.Ethha_0487	Phage tail tape measure protein, TP901 family	NA
UHGV-2072683_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2072683_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2072683_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2072683_9	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2072683_10	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-2072683_10	eggNOG-mapper	1507.HMPREF0262_00674	Host cell surface-exposed lipoprotein	NA
UHGV-2072683_10	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-2072683_11	PHROG	phrog_706	NA	unknown function
UHGV-2072683_11	UniRef90	UniRef90_A0A1C6FZV2	Bacteriophage Gp15 protein	NA
UHGV-2072683_11	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-2072683_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2072683_11	Structural annotation	PF06854	NA	NA
UHGV-2072683_12	PHROG	phrog_4450	NA	unknown function
UHGV-2072683_12	UniRef90	UniRef90_A0A3D3FBY8	AP endonuclease	NA
UHGV-2072683_12	eggNOG-mapper	545697.HMPREF0216_02856	NA	NA
UHGV-2072683_12	Pfam	PF20378	NA	DUF6673
UHGV-2072683_12	Structural annotation	PF10666	NA	NA
UHGV-2072683_13	PHROG	phrog_3099	NA	unknown function
UHGV-2072683_13	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-2072683_13	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-2072683_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2072683_14	PHROG	phrog_3266	tail completion	connector
UHGV-2072683_14	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-2072683_14	eggNOG-mapper	411471.SUBVAR_06989	NA	NA
UHGV-2072683_14	Structural annotation	PF12691	NA	NA
UHGV-2072683_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2072683_15	UniRef90	UniRef90_UPI001D0AB638	minor capsid protein	NA
UHGV-2072683_15	eggNOG-mapper	663278.Ethha_0493	Minor capsid protein	NA
UHGV-2072683_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2072683_15	Structural annotation	PF11114	NA	NA
UHGV-2072683_16	PHROG	phrog_3366	NA	unknown function
UHGV-2072683_16	eggNOG-mapper	663278.Ethha_0494	NA	NA
UHGV-2072683_16	Pfam	PF20536	NA	DUF6751
UHGV-2072683_16	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2072683_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2072683_18	PHROG	phrog_267	major head protein	head and packaging
UHGV-2072683_18	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-2072683_18	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2072683_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2072683_19	UniRef90	UniRef90_R6NCU4	Putative scaffolding protein	NA
UHGV-2072683_19	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-2072683_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2072683_19	Structural annotation	PF06810	NA	NA
UHGV-2072683_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2072683_21	UniRef90	UniRef90_A0A1C6H425	Phage minor capsid protein 2	NA
UHGV-2072683_21	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-2072683_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2072683_21	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2072683_21	COG	COG2369	NA	NA
UHGV-2072683_21	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-2072683_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-2072683_22	UniRef90	UniRef90_R6NIR1	Bacteriophage portal protein SPP1 Gp6-like protein	NA
UHGV-2072683_22	eggNOG-mapper	1449050.JNLE01000003_gene3894	NA	NA
UHGV-2072683_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2072683_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2072683_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2072683_23	UniRef90	UniRef90_R6P8C3	PBSX family phage terminase large subunit	NA
UHGV-2072683_23	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-2072683_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2072683_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2072683_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2072683_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-2072683_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2072683_24	PHROG	phrog_24579	terminase small subunit	head and packaging
UHGV-2072683_24	UniRef90	UniRef90_R6N2B3	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-2072683_24	eggNOG-mapper	1123288.SOV_2c10540	Helix-turn-helix of insertion element transposase	NA
UHGV-2072683_24	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-2072683_24	Structural annotation	PF13022	NA	NA
UHGV-2072683_26	Structural annotation	PF09274, NF041284, COG4877	NA	NA
UHGV-2072683_27	eggNOG-mapper	1209989.TepiRe1_2617	sigma factor activity	NA
UHGV-2072683_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2072683_28	PHROG	phrog_7134	NA	unknown function
UHGV-2072683_28	UniRef90	UniRef90_UPI001BDE30C7	pathogenicity island protein	NA
UHGV-2072683_28	eggNOG-mapper	411902.CLOBOL_06678	NA	NA
UHGV-2072683_28	Structural annotation	PF13601	NA	NA
UHGV-2072683_30	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2072683_30	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2072683_30	UniRef90	UniRef90_R6N5Q9	Phage/plasmid primase P4 family	NA
UHGV-2072683_30	eggNOG-mapper	720554.Clocl_1510	Phage plasmid primase, P4 family	NA
UHGV-2072683_30	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2072683_30	Pfam	PF19263	NA	DUF5906
UHGV-2072683_30	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2072683_30	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2072683_30	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2072683_30	Structural annotation	PF08706, PF05272, PF02257, MF_00016, NF011296, COG3378	NA	NA
UHGV-2072683_35	UniRef90	UniRef90_R6MXY1	Metal dependent phosphohydrolase	NA
UHGV-2072683_38	UniRef90	UniRef90_R6MV99	DNA binding domain protein excisionase family	NA
UHGV-2072683_38	eggNOG-mapper	742723.HMPREF9477_00648	Helix-turn-helix domain	NA
UHGV-2072683_38	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2072683_38	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2072683_38	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2072683_39	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2072683_39	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2072683_39	UniRef90	UniRef90_A0A290FZK7	Roantirepressor	NA
UHGV-2072683_39	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-2072683_39	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2072683_39	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2072683_39	COG	COG3617	Prophage antirepressor	NA
UHGV-2072683_39	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-2072683_40	UniRef90	UniRef90_A0A2N5PKD3	Phage repressor protein	NA
UHGV-2072683_40	eggNOG-mapper	1121423.JONT01000002_gene2373	NA	NA
UHGV-2072683_40	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-2072683_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2072683_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2072683_41	UniRef90	UniRef90_A0A1C6GK69	Transcriptional repressor DicA	NA
UHGV-2072683_41	eggNOG-mapper	1123288.SOV_2c10340	Helix-turn-helix XRE-family like proteins	NA
UHGV-2072683_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2072683_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2072683_41	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-2072683_42	PHROG	phrog_1914	NA	unknown function
UHGV-2072683_42	UniRef90	UniRef90_UPI001B3CA3BF	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2072683_42	eggNOG-mapper	699246.HMPREF0868_1568	NA	NA
UHGV-2072683_42	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2072683_42	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2072683_42	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2072683_45	KOfam	K14059	int; integrase	NA
UHGV-2072683_45	PHROG	phrog_1	integrase	integration and excision
UHGV-2072683_45	UniRef90	UniRef90_R6MXZ7	Putative site-specific recombinase	NA
UHGV-2072683_45	eggNOG-mapper	877414.ATWA01000018_gene2094	Phage integrase family	NA
UHGV-2072683_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2072683_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2072683_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2072683_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA