UHGV-2073335

Genome information

Genome length 35,632 bps

CDS count 50

Completeness 84.24% (medium-quality)

geNomad score 0.9683

Prediction confidence Confident

Genome information
Genome ID	UHGV-2073335
vOTU ID	vOTU-021797
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029382\|Ga0243901_1000217\|provirus_208_35839
BioSample	SAMN05971613
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9683
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.81
Jumbo phage	No

Genome content
Genome length	35,632 bps
GC content	58.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	96.00%
Average CDS length	688.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2073335_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2073335_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2073335_3	UniRef90	UniRef90_A0A7W8FHJ1	Phage repressor protein C with HTH and peptisase S24 domain	NA
UHGV-2073335_3	eggNOG-mapper	457398.HMPREF0326_03030	Peptidase S24-like	NA
UHGV-2073335_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2073335_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2073335_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2073335_5	Pfam	PF19808	NA	DUF6291
UHGV-2073335_6	PHROG	phrog_21423	NA	unknown function
UHGV-2073335_6	eggNOG-mapper	1408428.JNJP01000025_gene276	NA	NA
UHGV-2073335_7	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2073335_7	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2073335_7	UniRef90	UniRef90_A0A059WFK9	IstB-like ATP binding protein	NA
UHGV-2073335_7	eggNOG-mapper	1476902.A0A067ZJ24_9CAUD	IstB-like ATP binding protein	NA
UHGV-2073335_7	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2073335_7	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-2073335_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2073335_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2073335_8	UniRef90	UniRef90_F3Z0I0	Single-stranded DNA-binding protein	NA
UHGV-2073335_8	eggNOG-mapper	690850.Desaf_2673	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-2073335_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2073335_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2073335_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2073335_9	PHROG	phrog_824	NA	unknown function
UHGV-2073335_9	UniRef90	UniRef90_G1UY34	VRR-NUC domain-containing protein	NA
UHGV-2073335_9	eggNOG-mapper	563192.HMPREF0179_01752	VRR_NUC	NA
UHGV-2073335_9	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2073335_11	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2073335_11	Pfam	PF07750	GcrA cell cycle regulator	GcrA
UHGV-2073335_11	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-2073335_12	PADLOC	cluster3	Csf1_0_IV	CRISPR-CAS
UHGV-2073335_13	PHROG	phrog_22746	NA	unknown function
UHGV-2073335_13	UniRef90	UniRef90_UPI00069B2704	RAMP superfamily CRISPR-associated protein	NA
UHGV-2073335_13	eggNOG-mapper	1370121.AUWS01000015_gene7082	RAMP superfamily	NA
UHGV-2073335_13	PADLOC	cluster1	Csf2_0_IV	CRISPR-CAS
UHGV-2073335_13	COG	COG1857	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	NA
UHGV-2073335_13	Structural annotation	PF01905, TIGR03115, COG1604	NA	NA
UHGV-2073335_14	PADLOC	cluster2	Csf3_0_IV	CRISPR-CAS
UHGV-2073335_14	Structural annotation	PF09704, TIGR03116, COG1604	NA	NA
UHGV-2073335_15	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2073335_15	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2073335_15	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2073335_16	PHROG	phrog_474	phosphofructokinase	other
UHGV-2073335_16	UniRef90	UniRef90_A0A7X6GRJ7	NA	NA
UHGV-2073335_16	eggNOG-mapper	1123247.AUIJ01000002_gene2234	NA	NA
UHGV-2073335_16	Pfam	PF19905	NA	DUF6378
UHGV-2073335_16	Structural annotation	PF19905	NA	NA
UHGV-2073335_17	Structural annotation	TIGR03188, COG0140	NA	NA
UHGV-2073335_18	UniRef90	UniRef90_A0A4R3K725	Anaerobic ribonucleoside-triphosphate reductase-like protein	NA
UHGV-2073335_18	eggNOG-mapper	665956.HMPREF1032_01737	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-2073335_18	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-2073335_18	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-2073335_19	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2073335_19	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2073335_19	UniRef90	UniRef90_V2YB65	N6_N4_Mtase domain-containing protein (Fragment)	NA
UHGV-2073335_19	eggNOG-mapper	563192.HMPREF0179_00354	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2073335_19	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-2073335_19	COG	COG0863	DNA modification methylase	NA
UHGV-2073335_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2073335_20	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2073335_20	UniRef90	UniRef90_UPI001C396152	Site-specific DNA-methyltransferase	NA
UHGV-2073335_20	eggNOG-mapper	563192.HMPREF0179_00354	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2073335_20	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-2073335_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2073335_20	COG	COG0863	DNA modification methylase	NA
UHGV-2073335_20	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-2073335_21	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-2073335_21	PHROG	phrog_315	endolysin	lysis
UHGV-2073335_21	UniRef90	UniRef90_A0A807ZMP5	PG_binding_3 domain-containing protein	NA
UHGV-2073335_21	eggNOG-mapper	523794.Lebu_1825	Glycosyl hydrolase 108	NA
UHGV-2073335_21	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-2073335_21	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-2073335_21	COG	COG3926	Lysozyme family protein	NA
UHGV-2073335_23	PHROG	phrog_199	holin	lysis
UHGV-2073335_23	UniRef90	UniRef90_A0A7W8FHJ9	Phage-related holin	NA
UHGV-2073335_23	eggNOG-mapper	665942.HMPREF1022_00900	Bacteriophage holin family	NA
UHGV-2073335_23	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2073335_23	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2073335_23	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2073335_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2073335_24	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2073335_24	UniRef90	UniRef90_G1V611	C2H2-type domain-containing protein	NA
UHGV-2073335_24	eggNOG-mapper	1357272.AVEO02000111_gene3542	HNH nucleases	NA
UHGV-2073335_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2073335_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2073335_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2073335_25	UniRef90	UniRef90_A0A7J5WIX6	P27 family phage terminase small	NA
UHGV-2073335_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2073335_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2073335_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2073335_26	UniRef90	UniRef90_G1V609	Phage terminase, large subunit	NA
UHGV-2073335_26	eggNOG-mapper	1121448.DGI_2056	Phage Terminase	NA
UHGV-2073335_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2073335_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2073335_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2073335_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2073335_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-2073335_27	UniRef90	UniRef90_G1V608	HK97 family phage portal protein	NA
UHGV-2073335_27	eggNOG-mapper	883.DvMF_1657	portal protein, HK97 family	NA
UHGV-2073335_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2073335_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2073335_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2073335_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2073335_28	KOfam	K06904	NA	NA
UHGV-2073335_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2073335_28	UniRef90	UniRef90_B8DS64	Phage prohead protease, HK97 family	NA
UHGV-2073335_28	eggNOG-mapper	883.DvMF_1656	Caudovirus prohead serine protease	NA
UHGV-2073335_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2073335_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2073335_28	COG	COG3740	Phage head maturation protease	NA
UHGV-2073335_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2073335_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-2073335_29	UniRef90	UniRef90_B8DS63	Phage major capsid protein, HK97 family	NA
UHGV-2073335_29	eggNOG-mapper	883.DvMF_1655	Phage capsid family	NA
UHGV-2073335_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2073335_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2073335_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2073335_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2073335_30	PHROG	phrog_442	head-tail adaptor	connector
UHGV-2073335_30	UniRef90	UniRef90_UPI001EDBC708	phage gp6-like head-tail connector protein	NA
UHGV-2073335_30	eggNOG-mapper	279714.FuraDRAFT_0278	Phage gp6-like head-tail connector protein	NA
UHGV-2073335_30	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2073335_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2073335_30	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-2073335_31	PHROG	phrog_25	head closure Hc1	connector
UHGV-2073335_31	UniRef90	UniRef90_UPI0004963354	phage head closure protein	NA
UHGV-2073335_31	eggNOG-mapper	1408428.JNJP01000189_gene795	TIGRFAM phage head-tail adaptor	NA
UHGV-2073335_31	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2073335_31	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2073335_31	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2073335_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2073335_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2073335_32	UniRef90	UniRef90_UPI0005B81F17	HK97 gp10 family phage protein	NA
UHGV-2073335_32	eggNOG-mapper	883.DvMF_1651	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2073335_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2073335_32	Structural annotation	PF17395, COG5005	NA	NA
UHGV-2073335_33	PHROG	phrog_347	tail terminator	connector
UHGV-2073335_33	UniRef90	UniRef90_UPI00068A3FD3	NA	NA
UHGV-2073335_33	eggNOG-mapper	1408428.JNJP01000189_gene797	NA	NA
UHGV-2073335_33	Pfam	PF11367	NA	DUF3168
UHGV-2073335_33	Structural annotation	PF11367	NA	NA
UHGV-2073335_34	PHROG	phrog_290	minor tail protein	tail
UHGV-2073335_34	UniRef90	UniRef90_UPI001D05F35A	phage tail tube protein	NA
UHGV-2073335_34	eggNOG-mapper	690850.Desaf_3521	NA	NA
UHGV-2073335_34	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-2073335_34	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-2073335_35	Structural annotation	PF20336	NA	NA
UHGV-2073335_36	UniRef90	UniRef90_UPI001D09F5D4	NA	NA
UHGV-2073335_38	PHROG	phrog_1716	tail length tape measure protein	tail
UHGV-2073335_38	UniRef90	UniRef90_UPI001D08E8FB	tape measure protein	NA
UHGV-2073335_38	eggNOG-mapper	883.DvMF_1643	tape measure	NA
UHGV-2073335_38	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2073335_38	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-2073335_38	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2073335_38	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2073335_38	Structural annotation	PF20155, MF_04138, TIGR01760, COG3941	NA	NA
UHGV-2073335_39	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-2073335_39	eggNOG-mapper	768066.HELO_2076	NA	NA
UHGV-2073335_40	PHROG	phrog_396	minor tail protein	tail
UHGV-2073335_40	UniRef90	UniRef90_A0A7W2C2N8	NA	NA
UHGV-2073335_40	eggNOG-mapper	114615.BRADO3644	NA	NA
UHGV-2073335_40	Pfam	PF08875	NA	DUF1833
UHGV-2073335_40	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-2073335_41	UniRef90	UniRef90_UPI001E2B5F3B	C40 family peptidase	NA
UHGV-2073335_41	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2073335_41	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-2073335_42	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-2073335_42	UniRef90	UniRef90_A0A178MX61	Fibronectin type-III domain-containing protein	NA
UHGV-2073335_42	eggNOG-mapper	114615.BRADO3646	COG4733 Phage-related protein, tail component	NA
UHGV-2073335_42	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2073335_42	Structural annotation	PF13550, PF16389, PF21605, PF03658, PF19081, PF04721, MF_00460, MF_04116, NF040662, NF010681, TIGR01683, NF033675, COG4733, COG2914	NA	NA
UHGV-2073335_44	COG	COG4675	Phage tail collar domain	NA
UHGV-2073335_45	PHROG	phrog_24267	NA	unknown function
UHGV-2073335_45	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-2073335_45	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-2073335_45	COG	COG4675	Phage tail collar domain	NA
UHGV-2073335_45	Structural annotation	COG4675	NA	NA
UHGV-2073335_46	eggNOG-mapper	1408428.JNJP01000079_gene3365	Phage tail-collar fibre protein	NA
UHGV-2073335_46	COG	COG4675	Phage tail collar domain	NA
UHGV-2073335_47	Structural annotation	PF13671, MF_03172, TIGR03574, COG4639	NA	NA
UHGV-2073335_48	PHROG	phrog_4628	tail fiber assembly	tail
UHGV-2073335_48	UniRef90	UniRef90_UPI0011AF8E2E	phage tail assembly chaperone	NA
UHGV-2073335_48	eggNOG-mapper	742821.HMPREF9464_01813	Phage tail assembly chaperone protein	NA
UHGV-2073335_48	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC