UHGV-2074164

Genome information

Genome length 34,994 bps

CDS count 48

Completeness 82.91% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-2074164
vOTU ID	vOTU-027234
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029412\|Ga0243915_100737\|provirus_1_34994
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.38
Jumbo phage	No

Genome content
Genome length	34,994 bps
GC content	41.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	86.71%
Average CDS length	636.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2074164_1	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-2074164_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2074164_1	UniRef90	UniRef90_A5ZPK3	Site-specific recombinase, phage integrase family	NA
UHGV-2074164_1	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2074164_1	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2074164_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2074164_1	Structural annotation	PF00589, PF13495, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-2074164_3	eggNOG-mapper	411459.RUMOBE_04220	Histidine kinase	NA
UHGV-2074164_3	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-2074164_4	PHROG	phrog_6616	tail protein	tail
UHGV-2074164_4	UniRef90	UniRef90_A5ZPK6	Phage minor structural protein, N-terminal domain protein	NA
UHGV-2074164_4	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-2074164_4	COG	COG4926	Phage-related protein	NA
UHGV-2074164_4	Structural annotation	PF05113, PF02010, NF033848, NF011764, COG3500	NA	NA
UHGV-2074164_5	PHROG	phrog_1401	NA	unknown function
UHGV-2074164_5	UniRef90	UniRef90_UPI00129D2DCF	NA	NA
UHGV-2074164_5	eggNOG-mapper	1294142.CINTURNW_1041	NA	NA
UHGV-2074164_5	Structural annotation	PF07761	NA	NA
UHGV-2074164_6	PHROG	phrog_1194	NA	unknown function
UHGV-2074164_6	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-2074164_6	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2074164_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2074164_7	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-2074164_7	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-2074164_7	COG	COG5283	Phage-related tail protein	NA
UHGV-2074164_8	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2074164_8	UniRef90	UniRef90_UPI001EE8B5C4	NA	NA
UHGV-2074164_8	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-2074164_8	Structural annotation	PF19591	NA	NA
UHGV-2074164_9	PHROG	phrog_158	major tail protein	tail
UHGV-2074164_9	UniRef90	UniRef90_UPI0016452D03	phage tail protein	NA
UHGV-2074164_9	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-2074164_9	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2074164_10	PHROG	phrog_78	tail terminator	connector
UHGV-2074164_10	eggNOG-mapper	1499683.CCFF01000014_gene3904	NA	NA
UHGV-2074164_10	Structural annotation	PF05657	NA	NA
UHGV-2074164_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2074164_11	UniRef90	UniRef90_UPI001645FB65	HK97 gp10 family phage protein	NA
UHGV-2074164_11	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2074164_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2074164_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2074164_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2074164_12	PHROG	phrog_2168	NA	unknown function
UHGV-2074164_12	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-2074164_12	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2074164_13	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2074164_13	UniRef90	UniRef90_A0A173WLV7	Phage gp6-like head-tail connector protein	NA
UHGV-2074164_13	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-2074164_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2074164_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2074164_14	PHROG	phrog_247	major head protein	head and packaging
UHGV-2074164_14	UniRef90	UniRef90_UPI00156DFF0E	coat protein	NA
UHGV-2074164_14	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-2074164_14	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-2074164_15	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2074164_15	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-2074164_15	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-2074164_15	Pfam	PF14265	NA	DUF4355
UHGV-2074164_15	Structural annotation	PF14265	NA	NA
UHGV-2074164_16	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2074164_16	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-2074164_16	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-2074164_17	PHROG	phrog_1048	NA	unknown function
UHGV-2074164_17	UniRef90	UniRef90_A0A373P4J3	NA	NA
UHGV-2074164_17	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-2074164_17	Pfam	PF11195	NA	DUF2829
UHGV-2074164_17	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2074164_17	Structural annotation	PF11195	NA	NA
UHGV-2074164_18	UniRef90	UniRef90_A0A1Y4VHQ3	Transposase	NA
UHGV-2074164_18	eggNOG-mapper	936596.HMPREF1495_0345	NA	NA
UHGV-2074164_19	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-2074164_19	UniRef90	UniRef90_A0A173WML2	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-2074164_19	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2074164_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2074164_19	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2074164_19	COG	COG2369	NA	NA
UHGV-2074164_19	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-2074164_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-2074164_20	UniRef90	UniRef90_A0A173WMA1	Phage portal protein, SPP1 family	NA
UHGV-2074164_20	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-2074164_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2074164_20	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2074164_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2074164_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2074164_21	PHROG	phrog_10250	NA	unknown function
UHGV-2074164_21	UniRef90	UniRef90_A0A173WM22	Phage terminase, large subunit, PBSX family	NA
UHGV-2074164_21	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-2074164_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2074164_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2074164_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-2074164_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2074164_22	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-2074164_22	UniRef90	UniRef90_A0A564VY60	ATPase subunit of terminase (GpP-like)	NA
UHGV-2074164_22	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-2074164_22	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2074164_22	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2074164_22	COG	COG5484	NA	NA
UHGV-2074164_22	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-2074164_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2074164_23	UniRef90	UniRef90_UPI000931D7F9	RNA polymerase subunit sigma-70	NA
UHGV-2074164_23	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-2074164_23	Structural annotation	PF02996	NA	NA
UHGV-2074164_24	PHROG	phrog_6568	NA	unknown function
UHGV-2074164_27	PHROG	phrog_20593	NA	unknown function
UHGV-2074164_28	UniRef90	UniRef90_A0A173WN74	Sigma-70, region 4	NA
UHGV-2074164_28	Pfam	PF18024	Helix-turn-helix domain	HTH_50
UHGV-2074164_28	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2074164_28	Structural annotation	PF01710, NF040595	NA	NA
UHGV-2074164_30	PHROG	phrog_7566	NA	unknown function
UHGV-2074164_30	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-2074164_31	eggNOG-mapper	1298920.KI911353_gene4860	NA	NA
UHGV-2074164_32	PHROG	phrog_31560	NA	unknown function
UHGV-2074164_32	eggNOG-mapper	585501.HMPREF6123_0413	NA	NA
UHGV-2074164_33	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2074164_33	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2074164_33	UniRef90	UniRef90_UPI000E4E2822	ParB N-terminal domain-containing protein	NA
UHGV-2074164_33	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-2074164_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2074164_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2074164_33	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2074164_34	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2074164_34	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2074164_34	UniRef90	UniRef90_A0A1C5REE7	Sporulation initiation inhibitor protein soj	NA
UHGV-2074164_34	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-2074164_34	Pfam	PF13614	AAA domain	AAA_31
UHGV-2074164_34	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2074164_34	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2074164_36	UniRef90	UniRef90_A0A1C5RDL1	Ribonuclease H	NA
UHGV-2074164_36	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-2074164_36	COG	COG0328	Ribonuclease HI	NA
UHGV-2074164_36	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2074164_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2074164_37	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-2074164_37	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-2074164_37	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2074164_40	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-2074164_44	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-2074164_44	UniRef90	UniRef90_UPI00073F58F1	helix-turn-helix domain-containing protein	NA
UHGV-2074164_44	eggNOG-mapper	562743.JH976434_gene1051	Helix-turn-helix XRE-family like proteins	NA
UHGV-2074164_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2074164_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2074164_44	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2074164_45	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2074164_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2074164_45	UniRef90	UniRef90_UPI00073F908F	helix-turn-helix domain-containing protein	NA
UHGV-2074164_45	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-2074164_45	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2074164_45	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2074164_45	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2074164_46	PHROG	phrog_87	metallo-protease	other
UHGV-2074164_46	UniRef90	UniRef90_UPI000E449709	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2074164_46	eggNOG-mapper	411459.RUMOBE_00962	Zn peptidase	NA
UHGV-2074164_46	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2074164_46	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2074164_46	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2074164_47	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2074164_47	UniRef90	UniRef90_UPI000E432478	Abi family protein	NA
UHGV-2074164_47	eggNOG-mapper	411490.ANACAC_00817	Abi-like protein	NA
UHGV-2074164_47	PADLOC	AbiD	AbiD	Abi
UHGV-2074164_47	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2074164_47	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2074164_47	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2074164_48	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2074164_48	PHROG	phrog_95	integrase	integration and excision
UHGV-2074164_48	UniRef90	UniRef90_A5ZPQ0	Resolvase, N-terminal domain protein	NA
UHGV-2074164_48	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2074164_48	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2074164_48	Pfam	PF07508	Recombinase	Recombinase
UHGV-2074164_48	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2074164_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2074164_48	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA