UHGV-2074556

Genome information

Genome length 33,541 bps

CDS count 42

Completeness 84.77% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-2074556
vOTU ID	vOTU-023390
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029372\|Ga0243963_100538\|provirus_164_33704
BioSample	SAMN05971675
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.79
Jumbo phage	No

Genome content
Genome length	33,541 bps
GC content	50.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.79%
Average CDS length	759.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2074556_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2074556_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2074556_1	UniRef90	UniRef90_UPI0006826953	helix-turn-helix domain-containing protein	NA
UHGV-2074556_1	eggNOG-mapper	445972.ANACOL_00515	sequence-specific DNA binding	NA
UHGV-2074556_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2074556_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2074556_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2074556_2	UniRef90	UniRef90_A0A6N9PUN5	XRE family transcriptional regulator	NA
UHGV-2074556_2	eggNOG-mapper	445972.ANACOL_00516	Helix-turn-helix XRE-family like proteins	NA
UHGV-2074556_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2074556_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2074556_3	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2074556_3	UniRef90	UniRef90_UPI000F52F993	BRO family protein	NA
UHGV-2074556_3	eggNOG-mapper	203119.Cthe_1740	BRO family, N-terminal domain	NA
UHGV-2074556_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2074556_3	COG	COG3617	Prophage antirepressor	NA
UHGV-2074556_3	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-2074556_5	PHROG	phrog_310	transposase	integration and excision
UHGV-2074556_5	UniRef90	UniRef90_A0A3D0M0Q3	MerR family transcriptional regulator	NA
UHGV-2074556_5	eggNOG-mapper	552398.HMPREF0866_03136	Mu transposase, C-terminal	NA
UHGV-2074556_5	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-2074556_5	Pfam	PF00665	Integrase core domain	rve
UHGV-2074556_5	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-2074556_5	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-2074556_5	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-2074556_6	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-2074556_6	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-2074556_6	UniRef90	UniRef90_A0A3D0M121	AAA domain-containing protein	NA
UHGV-2074556_6	eggNOG-mapper	445972.ANACOL_00519	AAA domain	NA
UHGV-2074556_6	Pfam	PF13401	AAA domain	AAA_22
UHGV-2074556_6	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-2074556_6	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-2074556_8	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2074556_8	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2074556_8	UniRef90	UniRef90_UPI000681305E	ATP-binding protein	NA
UHGV-2074556_8	eggNOG-mapper	552398.HMPREF0866_03133	DNA replication protein	NA
UHGV-2074556_8	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2074556_8	NCBIFam	NF005304.0	ATP-binding protein	NA
UHGV-2074556_8	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2074556_8	Structural annotation	PF01695, MF_00377, NF005304, COG1484	NA	NA
UHGV-2074556_9	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2074556_10	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2074556_10	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2074556_10	UniRef90	UniRef90_UPI000682CA79	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-2074556_10	eggNOG-mapper	1160721.RBI_II00552	SpoVT / AbrB like domain	NA
UHGV-2074556_10	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-2074556_10	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2074556_10	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2074556_10	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2074556_11	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-2074556_14	UniRef90	UniRef90_A0A3D0XA36	Regulatory protein GemA	NA
UHGV-2074556_14	eggNOG-mapper	445972.ANACOL_00525	NA	NA
UHGV-2074556_15	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-2074556_15	UniRef90	UniRef90_A0A1Y4THR2	Mor domain-containing protein	NA
UHGV-2074556_15	eggNOG-mapper	665956.HMPREF1032_02963	Mor transcription activator family	NA
UHGV-2074556_15	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-2074556_15	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-2074556_15	Structural annotation	PF08765, COG5566	NA	NA
UHGV-2074556_16	UniRef90	UniRef90_A0A372V349	NA	NA
UHGV-2074556_16	eggNOG-mapper	665956.HMPREF1032_01633	NA	NA
UHGV-2074556_17	PHROG	phrog_25462	NA	unknown function
UHGV-2074556_17	UniRef90	UniRef90_A0A3D0M1R5	Type VI secretion protein (Fragment)	NA
UHGV-2074556_17	eggNOG-mapper	552398.HMPREF0866_03124	NA	NA
UHGV-2074556_17	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-2074556_18	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-2074556_18	UniRef90	UniRef90_UPI0006837483	NA	NA
UHGV-2074556_18	eggNOG-mapper	552398.HMPREF0866_03123	NA	NA
UHGV-2074556_18	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-2074556_18	Structural annotation	PF11985	NA	NA
UHGV-2074556_19	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-2074556_19	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-2074556_19	UniRef90	UniRef90_A0A6N3F7B1	NGN domain-containing protein	NA
UHGV-2074556_19	eggNOG-mapper	1122925.KB895376_gene423	Transcription termination factor nusG	NA
UHGV-2074556_19	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-2074556_19	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-2074556_19	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-2074556_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2074556_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2074556_21	UniRef90	UniRef90_UPI0009E500E8	PBSX family phage terminase large subunit	NA
UHGV-2074556_21	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-2074556_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2074556_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2074556_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-2074556_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2074556_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-2074556_22	UniRef90	UniRef90_UPI000681986B	phage portal protein	NA
UHGV-2074556_22	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-2074556_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2074556_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2074556_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2074556_23	UniRef90	UniRef90_UPI0006832D02	phage minor capsid protein	NA
UHGV-2074556_23	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-2074556_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2074556_23	COG	COG2369	NA	NA
UHGV-2074556_23	Structural annotation	PF06152	NA	NA
UHGV-2074556_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2074556_24	UniRef90	UniRef90_UPI00068085D4	phage scaffolding protein	NA
UHGV-2074556_24	eggNOG-mapper	1408437.JNJN01000045_gene593	Phage minor structural protein GP20	NA
UHGV-2074556_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2074556_24	Structural annotation	PF06810	NA	NA
UHGV-2074556_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-2074556_25	UniRef90	UniRef90_UPI0006833D9A	phage major capsid protein	NA
UHGV-2074556_25	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-2074556_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2074556_25	Pfam	PF13620	Carboxypeptidase regulatory-like domain	CarboxypepD_reg
UHGV-2074556_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2074556_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2074556_25	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2074556_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2074556_26	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-2074556_27	PHROG	phrog_3366	NA	unknown function
UHGV-2074556_27	Pfam	PF20536	NA	DUF6751
UHGV-2074556_27	Structural annotation	PF20536, COG1853	NA	NA
UHGV-2074556_28	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2074556_28	UniRef90	UniRef90_UPI0006806FCD	minor capsid protein	NA
UHGV-2074556_28	eggNOG-mapper	536233.CLO_0889	Minor capsid protein	NA
UHGV-2074556_28	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2074556_28	Structural annotation	PF11114	NA	NA
UHGV-2074556_29	PHROG	phrog_3266	tail completion	connector
UHGV-2074556_29	UniRef90	UniRef90_UPI000F637EFF	chloramphenicol resistance protein	NA
UHGV-2074556_29	eggNOG-mapper	1151292.QEW_4531	NA	NA
UHGV-2074556_29	Structural annotation	PF12691	NA	NA
UHGV-2074556_30	PHROG	phrog_820	major tail protein	tail
UHGV-2074556_30	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-2074556_30	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-2074556_30	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2074556_31	PHROG	phrog_4450	NA	unknown function
UHGV-2074556_31	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-2074556_31	Pfam	PF20378	NA	DUF6673
UHGV-2074556_31	Structural annotation	PF20378	NA	NA
UHGV-2074556_32	PHROG	phrog_706	NA	unknown function
UHGV-2074556_32	UniRef90	UniRef90_UPI0006828F20	Gp15 family bacteriophage protein	NA
UHGV-2074556_32	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-2074556_32	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2074556_32	Structural annotation	PF06854	NA	NA
UHGV-2074556_33	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2074556_33	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-2074556_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2074556_33	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2074556_33	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2074556_34	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2074556_35	PHROG	phrog_13879	NA	unknown function
UHGV-2074556_35	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-2074556_35	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2074556_36	eggNOG-mapper	1203606.HMPREF1526_00967	Concanavalin A-like lectin/glucanases superfamily	NA
UHGV-2074556_36	COG	COG3209	NA	NA
UHGV-2074556_37	UniRef90	UniRef90_A0A6A8VHM2	NA	NA
UHGV-2074556_37	eggNOG-mapper	931626.Awo_c11420	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-2074556_37	Pfam	PF19789	NA	DUF6273
UHGV-2074556_37	COG	COG3209	NA	NA
UHGV-2074556_37	Structural annotation	PF19789	NA	NA
UHGV-2074556_38	PHROG	phrog_27545	NA	unknown function
UHGV-2074556_38	UniRef90	UniRef90_UPI0006826107	phage tail assembly chaperone	NA
UHGV-2074556_38	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-2074556_38	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-2074556_39	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2074556_39	PHROG	phrog_435	endolysin	lysis
UHGV-2074556_39	UniRef90	UniRef90_UPI00189C147E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2074556_39	eggNOG-mapper	1121334.KB911073_gene1875	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2074556_39	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2074556_39	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2074556_39	Structural annotation	PF01520, PF08460, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-2074556_40	eggNOG-mapper	394503.Ccel_1297	NA	NA
UHGV-2074556_41	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2074556_41	PHROG	phrog_5073	tail fiber protein	tail
UHGV-2074556_41	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-2074556_41	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2074556_41	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA