UHGV-2074707

Genome information

Genome length 30,254 bps

CDS count 45

Completeness 85.67% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-2074707
vOTU ID	vOTU-041722
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029422\|Ga0242786_100506\|provirus_37266_67519
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.67
Jumbo phage	No

Genome content
Genome length	30,254 bps
GC content	59.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.75%
Average CDS length	633.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2074707_1	KOfam	K14059	int; integrase	NA
UHGV-2074707_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2074707_1	UniRef90	UniRef90_A0A3E2U2B4	Site-specific integrase	NA
UHGV-2074707_1	eggNOG-mapper	718252.FP2_06900	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2074707_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2074707_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2074707_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2074707_1	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2074707_3	PHROG	phrog_1847	NA	unknown function
UHGV-2074707_3	UniRef90	UniRef90_A0A291T8E0	T5orf172 domain-containing protein	NA
UHGV-2074707_3	eggNOG-mapper	718252.FP2_06880	NA	NA
UHGV-2074707_3	Pfam	PF13250	NA	DUF4041
UHGV-2074707_3	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2074707_3	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-2074707_3	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-2074707_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2074707_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2074707_4	UniRef90	UniRef90_A0A564U5Z2	LexA repressor	NA
UHGV-2074707_4	eggNOG-mapper	718252.FP2_06870	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2074707_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2074707_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2074707_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2074707_4	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2074707_5	UniRef90	UniRef90_UPI001CD6A7E5	helix-turn-helix domain-containing protein	NA
UHGV-2074707_5	eggNOG-mapper	718252.FP2_06860	NA	NA
UHGV-2074707_5	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-2074707_6	PHROG	phrog_5765	NA	unknown function
UHGV-2074707_6	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-2074707_6	eggNOG-mapper	642492.Clole_0933	NA	NA
UHGV-2074707_6	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-2074707_7	PHROG	phrog_3292	NA	unknown function
UHGV-2074707_7	UniRef90	UniRef90_UPI001D0DF0C3	KTSC domain-containing protein	NA
UHGV-2074707_7	eggNOG-mapper	748727.CLJU_c31420	KTSC domain	NA
UHGV-2074707_7	Pfam	PF13619	KTSC domain	KTSC
UHGV-2074707_7	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-2074707_7	Structural annotation	PF13619	NA	NA
UHGV-2074707_8	eggNOG-mapper	718252.FP2_06840	BRO family, N-terminal domain	NA
UHGV-2074707_8	COG	COG3617	Prophage antirepressor	NA
UHGV-2074707_9	UniRef90	UniRef90_A0A3E2U219	DNA-binding protein	NA
UHGV-2074707_9	eggNOG-mapper	718252.FP2_06830	NA	NA
UHGV-2074707_10	PHROG	phrog_32852	NA	unknown function
UHGV-2074707_13	UniRef90	UniRef90_UPI001D0E65C2	NA	NA
UHGV-2074707_13	Pfam	PF12957	NA	DUF3846
UHGV-2074707_13	Structural annotation	PF12957	NA	NA
UHGV-2074707_14	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-2074707_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2074707_16	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2074707_16	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-2074707_16	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-2074707_16	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2074707_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2074707_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2074707_17	UniRef90	UniRef90_UPI001D0F2FBF	single-stranded DNA-binding protein	NA
UHGV-2074707_17	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2074707_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2074707_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2074707_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2074707_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2074707_17	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-2074707_18	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2074707_18	UniRef90	UniRef90_A0A291T890	DnaB_2 domain-containing protein	NA
UHGV-2074707_18	eggNOG-mapper	1341181.FLJC2902T_22720	NA	NA
UHGV-2074707_18	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2074707_18	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-2074707_19	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2074707_19	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-2074707_19	UniRef90	UniRef90_D4K450	Methyltransferase	NA
UHGV-2074707_19	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-2074707_19	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-2074707_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2074707_19	COG	COG0863	DNA modification methylase	NA
UHGV-2074707_19	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-2074707_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2074707_21	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-2074707_21	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-2074707_21	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-2074707_22	PHROG	phrog_2412	NA	unknown function
UHGV-2074707_22	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-2074707_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2074707_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2074707_23	UniRef90	UniRef90_A0A844EGH8	PBSX family phage terminase large subunit	NA
UHGV-2074707_23	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-2074707_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2074707_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-2074707_23	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2074707_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2074707_24	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-2074707_24	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-2074707_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2074707_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2074707_25	UniRef90	UniRef90_D4K446	Phage minor capsid protein 2	NA
UHGV-2074707_25	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-2074707_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2074707_25	COG	COG2369	NA	NA
UHGV-2074707_25	Structural annotation	PF06152, PF12106	NA	NA
UHGV-2074707_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2074707_27	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-2074707_27	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-2074707_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2074707_27	Structural annotation	PF06810	NA	NA
UHGV-2074707_28	PHROG	phrog_267	major head protein	head and packaging
UHGV-2074707_28	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-2074707_28	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-2074707_28	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2074707_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2074707_30	PHROG	phrog_3366	NA	unknown function
UHGV-2074707_30	Structural annotation	PF20536	NA	NA
UHGV-2074707_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2074707_31	UniRef90	UniRef90_D4K441	Minor capsid	NA
UHGV-2074707_31	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-2074707_31	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2074707_31	Structural annotation	PF11114	NA	NA
UHGV-2074707_32	PHROG	phrog_3266	tail completion	connector
UHGV-2074707_32	eggNOG-mapper	718252.FP2_06620	NA	NA
UHGV-2074707_32	Structural annotation	PF12691	NA	NA
UHGV-2074707_33	PHROG	phrog_820	major tail protein	tail
UHGV-2074707_33	eggNOG-mapper	718252.FP2_06610	NA	NA
UHGV-2074707_33	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2074707_34	PHROG	phrog_4450	NA	unknown function
UHGV-2074707_34	Structural annotation	PF20378	NA	NA
UHGV-2074707_35	PHROG	phrog_706	NA	unknown function
UHGV-2074707_35	UniRef90	UniRef90_D4K437	Bacteriophage Gp15 protein	NA
UHGV-2074707_35	eggNOG-mapper	718252.FP2_06590	Bacteriophage Gp15 protein	NA
UHGV-2074707_35	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2074707_35	Structural annotation	PF06854	NA	NA
UHGV-2074707_36	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2074707_36	UniRef90	UniRef90_UPI00030AC5DB	tape measure protein	NA
UHGV-2074707_36	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-2074707_36	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2074707_36	COG	COG5283	Phage-related tail protein	NA
UHGV-2074707_36	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2074707_37	PHROG	phrog_36410	NA	unknown function
UHGV-2074707_37	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-2074707_37	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-2074707_37	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2074707_38	PHROG	phrog_538	minor tail protein	tail
UHGV-2074707_38	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2074707_38	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-2074707_38	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2074707_38	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2074707_39	PHROG	phrog_9534	head protein	head and packaging
UHGV-2074707_39	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-2074707_39	Structural annotation	PF21567	NA	NA
UHGV-2074707_43	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2074707_43	PHROG	phrog_894	endolysin	lysis
UHGV-2074707_43	UniRef90	UniRef90_A0A3E2U540	NA	NA
UHGV-2074707_43	eggNOG-mapper	718252.FP2_05470	Peptidase M15A	NA
UHGV-2074707_43	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2074707_43	COG	COG3108	NA	NA
UHGV-2074707_43	Structural annotation	PF05951, COG3108	NA	NA
UHGV-2074707_44	PHROG	phrog_199	holin	lysis
UHGV-2074707_44	UniRef90	UniRef90_A0A3E2U4Z7	Holin	NA
UHGV-2074707_44	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-2074707_44	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2074707_44	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2074707_44	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2074707_44	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2074707_45	PHROG	phrog_263	holin	lysis
UHGV-2074707_45	UniRef90	UniRef90_UPI001A9AA01F	phage holin	NA
UHGV-2074707_45	eggNOG-mapper	718252.FP2_14360	SPP1 phage holin	NA
UHGV-2074707_45	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2074707_45	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2074707_45	Structural annotation	PF04688, TIGR01592	NA	NA